ID: uc003thw.2_intron_0_0_chr7_42950521_r.5p
GENE: (1)
chr7:42950867-42951116-


(1)
AGO2.ip 		(1)
B-CELL 		(3)
BRAIN 		(8)
BREAST 		(7)
CELL-LINE 		(7)
CERVIX 		(2)
HEART 		(1)
LIVER 		(6)
OTHER 		(1)
RRP40.ip 		(1)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TCTGGGTTGACGTCAAATGCAGAAATGAGGCAGTGTTGATTTTTTTTGGCGTAAGTACCCCAAGCCTCGGGGGAAATCATGAGGCAGCCGGTTGAAGGAGACCAACTCGGGAAGGAGGAAAAGGTTAGGGAGGCTGAAGTGCTCAGTTTAGGACAGACACTTGCTTTGGACAGTTTGCTAACTAGCCAGTCTGTGTGTATTTTTGTTTTCGGCATTTTTGTCGCCTTTATTAAAATTTCTCAGCAGTTAA
...............................................................................((((.(((((((((......))))..(((......)))..............))))).....)))).........................................................................................................
..........................................................................75....................................................................145.......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189786SRR189782SRR189784GSM532879(GSM532879)
G659N. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040018(GSM532903)
G701N. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189785SRR029128(GSM416757)
H520. (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040012(GSM532897)
G648N. (cervix)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)		GSM532872(GSM532872)
G652T. (cervix)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................TGAGGCAGCCGGTTGAATAGT......................................................................................................................................................2111.000.004.001.005.00-------------------------1.00--------
...............................................................................TGAGGCAGCCGGTTGTAT.........................................................................................................................................................183.000.00-----2.00------------------------1.00------
...............................................................................TGAGGCAGCCGGTTGAATAG.......................................................................................................................................................203.000.00-1.00-1.00------------1.00--------------------
.......................................................................................................AACTCGGGAAGGAGGAAAAG...............................................................................................................................2012.002.00---------2.00---------------------------
........................................................................................................................AAGGTTAGGGAGGCTGAAGTG.............................................................................................................2112.002.00-------2.00-----------------------------
...............................................................................TGAGGCAGCCGGTTGTA..........................................................................................................................................................172.000.001.00------------1.00-----------------------
...............................................................................TGAGGCAGCCGGTTGTATG........................................................................................................................................................192.000.00----2.00--------------------------------
...............................................................................TGAGGCAGCCGGTTGAAGAGTT.....................................................................................................................................................222.000.002.00------------------------------------
...............................................................................TGAGGCAGCCGGTTGAAAACT......................................................................................................................................................212.000.001.00-1.00----------------------------------
.....................................................................................................................................................AGGACAGACACTTGCTTTGGACAGTTCGC........................................................................292.000.00--------2.00----------------------------
...............................................................................TGAGGCAGCCGGTTGTTG.........................................................................................................................................................182.000.00------------1.00-----------1.00------------
...............................................................................TGAGGCAGCCGGTTGAATAT.......................................................................................................................................................202.000.001.001.00-----------------------------------
......................AAATGAGGCAGTGTTGA...................................................................................................................................................................................................................1721.501.50----------1.50--------------------------
...............................................................................TGAGGCAGCCGGTTGAAGAGGT.....................................................................................................................................................221.000.00-1.00-----------------------------------
...............................................................................TGAGGCAGCCGGTTGCATG........................................................................................................................................................191.000.00---1.00---------------------------------
...............................................................................................................................................................................................TGTGTGTATTTTTGTAATA........................................191.000.00---------------1.00---------------------
...............................................................................TGAGGCAGCCGGTTGAATACT......................................................................................................................................................211.000.00--1.00----------------------------------
..........................................................................................................................................................AGACACTTGCTTTGGACAGTTTGC........................................................................2411.001.00-----------------------------1.00-------
...............................................................................TGAGGCAGCCGGTTGAAGAGTG.....................................................................................................................................................221.000.00----------------------------------1.00--
...............................................................................TGAGGCAGCCGGTTGGATG........................................................................................................................................................191.000.00---1.00---------------------------------
...............................................................................TGAGGCAGCCGGTTGAGCT........................................................................................................................................................1911.001.00-1.00-----------------------------------
....................AGAAATGAGGCAGTGTAGCT..................................................................................................................................................................................................................201.000.00-------------------------1.00-----------
...............................................................................TGAGGCAGCCGGTTGCAC.........................................................................................................................................................181.000.00----------------------1.00--------------
...............................................................................TGAGGCAGCCGGTTGTGGG........................................................................................................................................................191.000.00--------------1.00----------------------
...............................................................................TGAGGCAGCCGGTTGAGTG........................................................................................................................................................1911.001.00-1.00-----------------------------------
...............................................................................TGAGGCAGCCGGTTGCCT.........................................................................................................................................................181.000.00-----------------------------------1.00-
....................AGAAATGAGGCAGTGTAGCC..................................................................................................................................................................................................................201.000.00--------------------------1.00----------
...............................................................................TGAGGCAGCCGGTTGAATAGC......................................................................................................................................................211.000.001.00------------------------------------
...............................................................................TGAGGCAGCCGGTTGAG..........................................................................................................................................................1711.001.00--------------------1.00----------------
...............................................................................TGAGGCAGCCGGTTGAACAGT......................................................................................................................................................211.000.00-1.00-----------------------------------
...............................................................................TGAGGCAGCCGGTTGAATAGG......................................................................................................................................................211.000.001.00------------------------------------
...............................................................................TGAGGCAGCCGGTTGAAACG.......................................................................................................................................................201.000.001.00------------------------------------
...............................................................................TGAGGCAGCCGGTTGA...........................................................................................................................................................1611.001.001.00------------------------------------
...............................................................................TGAGGCAGCCGGTTGTGC.........................................................................................................................................................181.000.00---------------------1.00---------------
...............................................................................TGAGGCAGCCGGTTGGT..........................................................................................................................................................171.000.00--------------------------------1.00----
...............................................................................TGAGGCAGCCGGTTGTC..........................................................................................................................................................171.000.00------1.00------------------------------
...........................................................................................................CGGGAAGGAGGAAAAGGTTAGG.........................................................................................................................2211.001.00-----------------1.00-------------------
............................................................................................TGAAGGAGACCAACTCGGGAAGGAGG....................................................................................................................................2611.001.00-----------------------1.00-------------
...............................................................................TGAGGCAGCCGGTTGTGTG........................................................................................................................................................191.000.00-1.00-----------------------------------
...............................................................................TGAGGCAGCCGGTTGAATGG.......................................................................................................................................................201.000.00----1.00--------------------------------
..............................................................................................................................................................................................CTGTGTGTATTTTTGTAAT.........................................191.000.00-------------------1.00-----------------
...............................................................................TGAGGCAGCCGGTTGTG..........................................................................................................................................................171.000.00------1.00------------------------------
...............................................................................TGAGGCAGCCGGTTGAAGACTC.....................................................................................................................................................221.000.001.00------------------------------------
...............................................................................TGAGGCAGCCGGTTGAAA.........................................................................................................................................................181.000.00-----1.00-------------------------------
...............................................................................TGAGGCAGCCGGTTGAAGACTT.....................................................................................................................................................221.000.001.00------------------------------------
...................................TTGATTTTTTTTGGCCTG.....................................................................................................................................................................................................181.000.00---1.00---------------------------------
...............................................................................TGAGGCAGCCGGTTGTGCG........................................................................................................................................................191.000.00-----------1.00-------------------------
.......................................................................................................................................................................................AGCCAGTCTGTGTGTATTTTT..............................................2111.001.00---------------------------1.00---------
...............................................................................TGAGGCAGCCGGTTGAATGGG......................................................................................................................................................211.000.00-------------------------------1.00-----
...............................................................................TGAGGCAGCCGGTTGTGCT........................................................................................................................................................191.000.00-1.00-----------------------------------
.....................................................................................................CCAACTCGGGAAGGA......................................................................................................................................1530.330.33------------------------------------0.33

Antisense strand
TCTGGGTTGACGTCAAATGCAGAAATGAGGCAGTGTTGATTTTTTTTGGCGTAAGTACCCCAAGCCTCGGGGGAAATCATGAGGCAGCCGGTTGAAGGAGACCAACTCGGGAAGGAGGAAAAGGTTAGGGAGGCTGAAGTGCTCAGTTTAGGACAGACACTTGCTTTGGACAGTTTGCTAACTAGCCAGTCTGTGTGTATTTTTGTTTTCGGCATTTTTGTCGCCTTTATTAAAATTTCTCAGCAGTTAA
...............................................................................((((.(((((((((......))))..(((......)))..............))))).....)))).........................................................................................................
..........................................................................75....................................................................145.......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189786SRR189782SRR189784GSM532879(GSM532879)
G659N. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040018(GSM532903)
G701N. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189785SRR029128(GSM416757)
H520. (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040012(GSM532897)
G648N. (cervix)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)		GSM532872(GSM532872)
G652T. (cervix)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................GAGGCAGTGTTGATTTTCACT........................................................................................................................................................................................................... 211.000.00------------------1.00------------------
....................................................................................CAGCCGGTTGAAGGAGACCAAT................................................................................................................................................ 221.000.00---------------------------------1.00---