ID: uc003tgc.1_intron_2_0_chr7_38305280_r.5p
GENE: TARP(1)
chr7:38312988-38313237-


(2)
BRAIN 		(4)
BREAST 		(10)
CELL-LINE 		(4)
CERVIX 		(9)
HEART 		(1)
OTHER 		(1)
SKIN 		(1)
XRN.ip

Sense strand
GGGCAAAAAAATCAAGGTATTTGGTCCCGGAACAAAGCTTATCATTACAGGTAAGTTTTCTTTAAATTTTGCAATGTAAAGAAGGGATGGGAGGCTGGCAGGCAGGAGCTGGCTCAGAATTCTAGGATTCCCTCCTTGGTCACTAATCATGGTGAAATCTCCAGAGAGGTCAGGTGACTTGGTTCATGCCTTAGGAGTCAGAACTTTTCCTGCCCTAGCATGGGAGACATTACTAAGGAGCTTAGACCAA
..................................................................((((((...)))))).((((((((((..(((((.(((....))).)).)))..)))))....)))))((..(((((((........(((..(((....)))..)))))))))).))....................................................................
................................................................65........................................................................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR553574(SRX182780)
source: Heart. (Heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040009(GSM532894)
G727T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577741(Rovira)
total RNA. (breast)		GSM532884(GSM532884)
G871T. (cervix)		SRR038861(GSM458544)
MM466. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.....................................................................TGCAATGTAAAGAAGTATG..................................................................................................................................................................1958.000.0016.0011.00--5.005.004.005.003.003.002.001.00--1.00------1.00---1.00-------
.....................................................................TGCAATGTAAAGAAGTAT...................................................................................................................................................................1811.000.004.001.00--1.00-1.00-1.00--------------1.00--1.00--1.00---
.................................................................................................................................................................................................................................GACATTACTAAGGAGCTTAGA....2114.004.00--4.00------------------------------
..................................................................................................................................................................................................................................ACATTACTAAGGAGCTTAGA....2013.003.00--3.00------------------------------
.......AAAATCAAGGTATTTGGTCCCGG............................................................................................................................................................................................................................2312.002.00---2.00-----------------------------
.......AAAATCAAGGTATTTGGTCCCGGAACAAA......................................................................................................................................................................................................................2911.001.00-------------------------------1.00-
.....................................................................TGCAATGTAAAGAAGGATGG.................................................................................................................................................................201.000.00--------------------1.00------------
.......AAAATCAAGGTATTTGGTCCCGGAA..........................................................................................................................................................................................................................2511.001.00---1.00-----------------------------
..............................................................................AAGAAGGGATGGGAGGCTGG........................................................................................................................................................2011.001.00------------1.00--------------------
...............................................................................................................................................................................................................TCCTGCCCTAGCATGGGA.........................1811.001.00-------------1.00-------------------
.....................................................................TGCAATGTAAAGAAGTACT..................................................................................................................................................................191.000.00-----------1.00---------------------
...CAAAAAAATCAAGGTATTTGG..................................................................................................................................................................................................................................2111.001.00--------------------------------1.00
....AAAAAAATCAAGGTAGGGT...................................................................................................................................................................................................................................191.000.00----------------1.00----------------
..................................................................................AGGGATGGGAGGCTGGGGGC....................................................................................................................................................201.000.00----------------------------1.00----
..................................................................................................................................................................AGAGAGGTCAGGTGACTTGGT...................................................................2111.001.00---1.00-----------------------------
.....................................................................TGCAATGTAAAGAAGTATA..................................................................................................................................................................191.000.00-1.00-------------------------------
.....................................................................TGCAATGTAAAGAAGTACG..................................................................................................................................................................191.000.00-------------------1.00-------------
......................................................................................................................................................................................................................CTAGCATGGGAGACACG...................171.000.00----------------------1.00----------
.........................................................................ATGTAAAGAAGGGATGGGA..............................................................................................................................................................1911.001.00--1.00------------------------------
..............................................................................................................................................................CTCCAGAGAGGTCAGGTGACTTGG....................................................................2411.001.00---1.00-----------------------------
..............AGGTATTTGGTCCCGGAAC.........................................................................................................................................................................................................................1911.001.00---1.00-----------------------------

Antisense strand
GGGCAAAAAAATCAAGGTATTTGGTCCCGGAACAAAGCTTATCATTACAGGTAAGTTTTCTTTAAATTTTGCAATGTAAAGAAGGGATGGGAGGCTGGCAGGCAGGAGCTGGCTCAGAATTCTAGGATTCCCTCCTTGGTCACTAATCATGGTGAAATCTCCAGAGAGGTCAGGTGACTTGGTTCATGCCTTAGGAGTCAGAACTTTTCCTGCCCTAGCATGGGAGACATTACTAAGGAGCTTAGACCAA
..................................................................((((((...)))))).((((((((((..(((((.(((....))).)).)))..)))))....)))))((..(((((((........(((..(((....)))..)))))))))).))....................................................................
................................................................65........................................................................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR553574(SRX182780)
source: Heart. (Heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040009(GSM532894)
G727T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577741(Rovira)
total RNA. (breast)		GSM532884(GSM532884)
G871T. (cervix)		SRR038861(GSM458544)
MM466. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
...........................................................................................................ATCCTAGAATTCTGAGCCAGC.......................................................................................................................... 2111.001.00------------------1.00--------------
................................................................................................................................................................................................AGGAGTCAGAACTTTGC......................................... 171.000.00------------------------------1.00--
..........................ATAAGCTTTGTTCCGG................................................................................................................................................................................................................ 1611.001.00------------------------1.00--------
.....................................................................CATCCCTTCTTTACATTGCA................................................................................................................................................................. 2011.001.00------------1.00--------------------
...................................................................................................................................................CATGGTGAAATCTCCCGTT.................................................................................... 191.000.00---------------------------1.00-----
...........................................................................................................................................................................................................................................AGGAGCTTAGACCAAGGCA 191.000.00---------------1.00-----------------