ID: uc003tdi.2_intron_1_0_chr7_33055483_r.5p
GENE: (8)
chr7:33056851-33057100-


(1)
AGO2.ip
(2)
BREAST
(7)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
LIVER
(1)
OTHER
(11)
SKIN

Sense strand
ATCATCCCAATGTCAAAGTTGTGTCCAATTTTATGGATTTTGATGAAACTGTAAGAATATCAAATCGTTCTTCATAATTTTAAAATCTGAAAATATTTTAATCATGTAAATTTATTTATTGTTACTTAATATATATCCTATATCCAGAAATTAGGCCAAGCCGATAGGCCCACTGTGGGACTCCATCCTTCTCAGTGTTAATATATCCATATTTTAAAAACAATGTGCCCTTCTTAAACTTTCATTCCCC
............................................................................................................................((..(((((.....)))))..))......((((.........))))................................................................................
.....................................................................................................................118.......................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189785SRR040025(GSM532910)
G613T. (cervix)
SRR343334SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................................................................................ATAGGCCCACTGTGGGACTCCATCCTTCCCAG.......................................................3212.000.009.001.002.00-----------------------
...................................................................................................................................................................ATAGGCCCACTGTGGGACTCCATCCTCAG..........................................................295.000.003.001.001.00-----------------------
.....................................................................................................................................................................AGGCCCACTGTGGGACTCCATCCTTCCCAG.......................................................303.000.00-2.001.00-----------------------
..........................................................................................................................................................GCCAAGCCGATAGGCCCA..............................................................................1813.003.00----3.00---------------------
.........................................................................................................................TTACTTAATATATATCCTATATCCAG.......................................................................................................2613.003.00---2.00---1.00------------------
..........................................................................................................................TACTTAATATATATCCTATATCCAG.......................................................................................................2513.003.00---3.00----------------------
.......................................................................................................................................................................................................AATATATCCATATTTTAAAAACAATG.........................2612.002.002.00-------------------------
..............................................................................................................................................................AGCCGATAGGCCCACTGTGGGACTCCATCCC.............................................................312.000.00-2.00------------------------
.....................................................................................................................................................................AGGCCCACTGTGGGACTCCATCCTCAG..........................................................272.000.00--2.00-----------------------
...........................................................................................................................................................................ACTGTGGGACTCCATCCTTCCCAG.......................................................241.000.00-1.00------------------------
....................................................................................................................................................................TAGGCCCACTGTGGGACTCCATCCATCC..........................................................281.000.00--1.00-----------------------
.....................................................................................................................................................................AGGCCCACTGTGGGACTCCATCCTTCTCAGTG.....................................................3211.001.00-1.00------------------------
...................................................................................................................................................................ATAGGCCCACTGTGGGACTCCATCTCTC...........................................................281.000.00--1.00-----------------------
...................................................................................................................................................................ATAGGCCCACTGTGGGACTCCATCCTTCTCAG.......................................................3211.001.00-1.00------------------------
...............................TATGGATTTTGATGAAACTCTG.....................................................................................................................................................................................................221.000.00----------1.00---------------
..........................................................................................................................................................................CACTGTGGGACTCCATCCCTC...........................................................211.000.00--1.00-----------------------
...............................................................ATCGTTCTTCATAATTTT.........................................................................................................................................................................1811.001.00-------------1.00------------
..........................................................................................................TAAATTTATTTATTGTTACTTAAAATA.....................................................................................................................271.000.001.00-------------------------
...........................................................................................................................................................................ACTGTGGGACTCCATCCTTCCAG........................................................231.000.00--1.00-----------------------
.............................................................................................................ATTTATTTATTGTTACTTTA.........................................................................................................................201.000.001.00-------------------------
...........................................................................................................................................................................ACTGTGGGACTCCATCCCC............................................................191.000.00--1.00-----------------------
.....................................................................................................................................................................AGGCCCACTGTGGGACTCCATCCCTC...........................................................261.000.00-1.00------------------------
...........................................................................................................................................................................ACTGTGGGACTCCATCCTTCTCAGTGTTAATA...............................................3211.001.00--1.00-----------------------
....................................................................................................................................................................TAGGCCCACTGTGGGACTCCATCCTTCCCAG.......................................................311.000.00--1.00-----------------------
........................................................................................................................................................................CCCACTGTGGGACTCCATCCTTCCCAG.......................................................271.000.00------------1.00-------------
.....................................................................................................................................................................AGGCCCACTGTGGGACTCCATCCTCAGT.........................................................281.000.00-1.00------------------------
...........................................TGAAACTGTAAGAATATCAAATC........................................................................................................................................................................................2311.001.00------1.00-------------------
...................................................................................................................................................................................................................................CCCTTCTTAAACTTTCATTCCCC2311.001.00-----------1.00--------------
....................................................................................................................................................................TAGGCCCACTGTGGGACTCCATCCCTC...........................................................271.000.00-1.00------------------------
....................................ATTTTGATGAAACTGTAAGAATATCAAA..........................................................................................................................................................................................2811.001.00--------1.00-----------------
.........................................................................................................................................CTATATCCAGAAATTAGGCCAAGCCGAT.....................................................................................2811.001.00---------1.00----------------
.....................................................................................................................................................................AGGCCCACTGTGGGACTCCATCCTCCTC.........................................................281.000.00-1.00------------------------
...................................................................................................................................................................ATAGGCCCACTGTGGGACTCCATCCTCCTC.........................................................301.000.00-1.00------------------------
...........................................................................................................................................................................ACTGTGGGACTCCATCCTTCTCAG.......................................................2411.001.00--------------1.00-----------
................................................................................................................TATTTATTGTTACTTAATATACA...................................................................................................................231.000.001.00-------------------------
..........................AATTTTATGGATTTTGATGA............................................................................................................................................................................................................2030.670.67---------------0.67----------
.................................TGGATTTTGATGAAACT........................................................................................................................................................................................................1740.500.50-----------------------0.250.25-
................................ATGGATTTTGATGAAACTGT......................................................................................................................................................................................................2020.500.50-----------------0.50--------
...................................GATTTTGATGAAACTGTAAGAATATC.............................................................................................................................................................................................2620.500.50----------------0.50---------
.................................TGGATTTTGATGAAACTGTAAGAATATC.............................................................................................................................................................................................2820.500.50------------------0.50-------
.................................TGGATTTTGATGAAACTGTAAGAATATCA............................................................................................................................................................................................2920.500.50------0.50-------------------
...............................TATGGATTTTGATGAAA..........................................................................................................................................................................................................1730.330.33---------------------0.33----
................................ATGGATTTTGATGAAACTG.......................................................................................................................................................................................................1930.330.33-------------------0.33------
...........................ATTTTATGGATTTTGATGAAACTG.......................................................................................................................................................................................................2430.330.33--------------------0.33-----
...................................................................TTCTTCATAATTTTAAAATCTG.................................................................................................................................................................2230.330.33---0.33----------------------
..........................AATTTTATGGATTTTGATG.............................................................................................................................................................................................................1940.250.25----------------------0.25---
...............................TATGGATTTTGATGAA...........................................................................................................................................................................................................1650.200.20-------------------------0.20

Antisense strand
ATCATCCCAATGTCAAAGTTGTGTCCAATTTTATGGATTTTGATGAAACTGTAAGAATATCAAATCGTTCTTCATAATTTTAAAATCTGAAAATATTTTAATCATGTAAATTTATTTATTGTTACTTAATATATATCCTATATCCAGAAATTAGGCCAAGCCGATAGGCCCACTGTGGGACTCCATCCTTCTCAGTGTTAATATATCCATATTTTAAAAACAATGTGCCCTTCTTAAACTTTCATTCCCC
............................................................................................................................((..(((((.....)))))..))......((((.........))))................................................................................
.....................................................................................................................118.......................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189785SRR040025(GSM532910)
G613T. (cervix)
SRR343334SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)