ID: uc003tco.1_intron_17_0_chr7_32249152_r.5p
GENE: (1)
chr7:32338063-32338312-


(1)
AGO1.ip
(2)
AGO2.ip
(5)
BRAIN
(6)
BREAST
(10)
CELL-LINE
(8)
CERVIX
(2)
HEART
(2)
LIVER
(1)
OTHER
(28)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
AAAATGCCGGAGCGCCACTTTCAGCATCGATGGCTACAGCTTCACCATAGGTGAGAACTTTCCACCCCTCTCGGACTCCTGGCTCGGGCAAACGCCCTCTCCGGTGGCGGTCAGAGTTCCTTTCTAAGCGGGCAGGGGGAGCTCAGGGGTCGGGCTGGGGCCGGAGGGTGCTCTCCGGGCGGGAGCCCCCGGGAGCGGCGACTGGGTCGGGACAGAAGCCGCACCCTGGGCTGTCCCCCCCGGCACCCCT
....................................................................................................................................................((((..(((((((((((((....)))))))((....))))))))...))))...................................................
..............................................................................................................................................143......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040028(GSM532913)
G026N. (cervix)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189784SRR189787SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029126(GSM416755)
143B. (cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR189785SRR040039(GSM532924)
G531T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040009(GSM532894)
G727T. (cervix)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR040032(GSM532917)
G603N. (cervix)
GSM532879(GSM532879)
G659N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................................................................................................................GGCGGGAGCCCCCGGGA........................................................17118.0018.008.005.002.00--------------------------1.00-------1.00--1.00--------------------------
.................................................................................................................................................................................GGCGGGAGCCCCCGGG.........................................................16311.3311.331.671.672.33---2.33----0.330.330.33-0.67------------------------------0.33-0.33-0.33-0.330.33-------------
...................................................................................................................................................GGTCGGGCTGGGGCCCG......................................................................................174.000.00---2.00----------------------------1.00---------1.00------------------------
....................................................................................................................................................GTCGGGCTGGGGCCGAAG....................................................................................183.000.00----1.00-------------------------1.00-----1.00------------------------------
.................................................................................................................................................................................GGCGGGAGCCCCCGG..........................................................1562.332.330.17-0.17---0.50--0.17-----0.33---------------------------------------------0.170.170.170.170.170.17
...................................................................................................................................................GGTCGGGCTGGGGCCGAAGC...................................................................................202.000.00----1.00------------------------------1.00-------------------------------
.................................................................................................................................................................................GGCGGGAGCCCCCGGGAGAG.....................................................2012.002.00----------------1.00--------------1.00-----------------------------------
.................................................................................................................................................................................GGCGGGAGCCCCCGGGAG.......................................................1812.002.00-----1.00-------1.00-----------------------------------------------------
...................................................................................................................................................................................CGGGAGCCCCCGGGAGAG.....................................................182.000.00---------1.00---------------------------------1.00-----------------------
..................................................................................................................................................................................GCGGGAGCCCCCGGGA........................................................1631.331.33--0.330.33-----------------------------------------0.33-----------0.33---------
...................................................................................................................................................................................CGGGAGCCCCCGGGA........................................................1551.201.20-0.600.20------0.20-----0.20---------------------------------------------------
.................................................................................................................................................................................GGCGGGAGCCCCCGGGAGGG.....................................................2011.002.00-----------------------1.00-------------------------------------------
...........................................................................................................................................................TGGGGCCGGAGGGTGTGC.............................................................................181.000.00----------------------------------1.00--------------------------------
.................................................................................................................................................................................GGCGGGAGCCCCCGGGATA......................................................1911.0018.00----------1.00--------------------------------------------------------
...................................................................................................................................................................................CGGGAGCCCCCGGGAGCGTT...................................................201.000.00------------------1.00------------------------------------------------
...........................................ACCATAGGTGAGAACTC..............................................................................................................................................................................................171.000.00-----------------1.00-------------------------------------------------
...........................................................................................................................................................TGGGGCCGGAGGGTGTAG.............................................................................181.000.00--------1.00----------------------------------------------------------
...................................................................................................................................................GGTCGGGCTGGGGCCGAA.....................................................................................181.000.00------------1.00------------------------------------------------------
...................................................................................................................................................................................CGGGAGCCCCCGGGAGAGT....................................................191.000.00--------------1.00----------------------------------------------------
...........................................................................................................................................................TGGGGCCGGAGGGTGTCTA............................................................................191.000.00------------------------1.00------------------------------------------
..........................................................................................................................................................................................................................................CCCCCCCGGCACCCCCGC181.000.00---1.00---------------------------------------------------------------
..........................................................................................................................................................................................................................................CCCCCCCGGCACCCCGGGG191.000.00-----------------------------------------1.00-------------------------
...................................................................................................................................................GGTCGGGCTGGGGCCGCAGC...................................................................................201.000.00----1.00--------------------------------------------------------------
...................................................................................................................................................GGTCGGGCTGGGGCCCGA.....................................................................................181.000.00-------------------1.00-----------------------------------------------
...........................................................................................................................................................................................CCCGGGAGCGGCGACC...............................................161.000.00----------------------------1.00--------------------------------------
..............................................................................................................................AGCGGGCAGGGGGAGTGAG.........................................................................................................191.000.00--------------------------------------------1.00----------------------
.................................................................................................................................................................................GGCGGGAGCCCCCGGGACT......................................................1911.0018.00-----1.00-------------------------------------------------------------
...........................................................................................................................................................TGGGGCCGGAGGGTGCTGACG..........................................................................211.000.00-------1.00-----------------------------------------------------------
.................................................................................................................................................................................GGCGGGAGCCCCCGGGAA.......................................................1811.0018.00-----1.00-------------------------------------------------------------
.................................................................................................................................................GGGGTCGGGCTGGGGCGCG......................................................................................1941.000.50---------------------------------1.00---------------------------------
..................................................................................................................................................................................GCGGGAGCCCCCGGGAGCGT....................................................201.000.00----------------------1.00--------------------------------------------
...........................................................................................................................................................TGGGGCCGGAGGGTGCTCAC...........................................................................201.000.00--------1.00----------------------------------------------------------
................................................................................................................................................................................GGGCGGGAGCCCCCGGGA........................................................1811.001.00---------------------------1.00---------------------------------------
...........................................................................................................................................................TGGGGCCGGAGGGTGTTG.............................................................................181.000.00--------------------1.00----------------------------------------------
.................................................................................................................................................................................GGCGGGAGCCCCCGGGGG.......................................................1830.6711.33--0.33------------------------------------------------0.33---------------
.................................................................................................................................................................................GGCGGGAGCCCCCGGGGA.......................................................1830.6711.33-----------------------------------------------0.33--------0.33----------
.................................................................................................................................................GGGGTCGGGCTGGGGC.........................................................................................1640.500.50----------------------------------------------0.25------------0.25-------
.................................................................................................................................................................................GGCGGGAGCCCCCGGGCCGG.....................................................2030.3311.33------------------------------------------------------0.33------------
..................................................................................................................................................................................GCGGGAGCCCCCGGGAGA......................................................1830.330.33--------------0.33----------------------------------------------------
................................................................................................................................................................................GGGCGGGAGCCCCCGGG.........................................................1730.330.33----------------------------------------------------------0.33--------
..................................................................................................................................................................................GCGGGAGCCCCCGGGAG.......................................................1730.330.33---------------------------------------------0.33---------------------
.................................................................................................................................................................................GGCGGGAGCCCCCGGGCTCT.....................................................2030.3311.33----------0.33--------------------------------------------------------
.................................................................................................................................................................................GGCGGGAGCCCCCGGGCTG......................................................1930.3311.33-------------------------------------------------------0.33-----------
.................................................................................................................................................GGGGTCGGGCTGGGGCG........................................................................................1740.250.50------------------------------------------------------------0.25------

Antisense strand
AAAATGCCGGAGCGCCACTTTCAGCATCGATGGCTACAGCTTCACCATAGGTGAGAACTTTCCACCCCTCTCGGACTCCTGGCTCGGGCAAACGCCCTCTCCGGTGGCGGTCAGAGTTCCTTTCTAAGCGGGCAGGGGGAGCTCAGGGGTCGGGCTGGGGCCGGAGGGTGCTCTCCGGGCGGGAGCCCCCGGGAGCGGCGACTGGGTCGGGACAGAAGCCGCACCCTGGGCTGTCCCCCCCGGCACCCCT
....................................................................................................................................................((((..(((((((((((((....)))))))((....))))))))...))))...................................................
..............................................................................................................................................143......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040028(GSM532913)
G026N. (cervix)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189784SRR189787SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029126(GSM416755)
143B. (cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR189785SRR040039(GSM532924)
G531T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040009(GSM532894)
G727T. (cervix)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR040032(GSM532917)
G603N. (cervix)
GSM532879(GSM532879)
G659N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................................................................GGGCGGGAGCCCCCGCC......................................................... 171.000.00--------------------------1.00----------------------------------------
...............................................................................................................CTTAGAAAGGAACTCTG.......................................................................................................................... 1711.001.00--------------------------------------1.00----------------------------
.............................................................AGGAGTCCGAGAGGGGTGG.......................................................................................................................................................................... 1911.001.00-----------1.00-------------------------------------------------------
.................................................................................................................................GGGCAGGGGGAGCTCACC....................................................................................................... 181.000.00-------1.00-----------------------------------------------------------
...................................................................CTCTCGGACTCCTGGTAG..................................................................................................................................................................... 181.000.00---------------------------------------1.00---------------------------
..........................................................................................................................................................................................................................................CCCCCCCGGCACCCCC 161.000.00---------------------1.00---------------------------------------------
..................................................................................................................................................................................GCGGGAGCCCCCGGGAA....................................................... 171.000.00---1.00---------------------------------------------------------------
......................................................GAACTTTCCACCCCTCGTAT................................................................................................................................................................................ 201.000.00-------------------------1.00-----------------------------------------
.....................................................................................................................................................................................CCGCTCCCGGGGGCTCC.................................................... 1730.330.33-------------------------------------------------0.33-----------------
.................................................................................................................................................................................................................................GGGGGGACAGCCCAG.......... 1570.140.14-------0.14-----------------------------------------------------------