ID: uc003tal.1_intron_2_0_chr7_30062433_r.5p
GENE: FKBP14(1)
chr7:30065728-30065977-


(4)
B-CELL
(2)
BRAIN
(5)
BREAST
(10)
CELL-LINE
(1)
FIBROBLAST
(1)
HEART
(2)
LIVER
(1)
OTHER
(4)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
GTCCACTATGAAGGCTACTTAGAAAAGGACGGCTCCTTATTTCACTCCACGTAAGTAATTATGCCCCGCAGGTAAAATAGTAATTAAGAATCCACTCACTTATGCCAGCTCTCCAGCAGGAAAGGTGGCCTGTACCTGGTTTTGCCTCTTTTACAAAACCGAAATATCTTATTTCCTTCTTTGGGAAAGGAAATTGTTTAAAGCCAGTTTTATATAGCGAGCGAGGCCTTTGAAGGTCTTGTTGGAAACA
...............................................................................................................(((....)))....((((........(((((((.........))))))).(((((..((.((((((.....))))))..))..)))))...))))............................................
...............................................................................................................112.............................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR029128(GSM416757)
H520. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
GSM339996(GSM339996)
hues6Neuron. (cell line)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR189782SRR390723(GSM850202)
total small RNA. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
.........................................................................................................................................................................................AAAGGAAATTGTTTAGATA..............................................19030.001.002.0011.00-4.007.00-3.00----1.00-2.00-----------------
.........................................................................................................................................................................................AAAGGAAATTGTTTAGATC..............................................19011.001.0011.00------------------------------
..........................................................................................................................................................................................AAGGAAATTGTTTAATC...............................................175.000.005.00------------------------------
....................................................................................................................CAGGAAAGGTGGCCTGTA....................................................................................................................1815.005.00-----5.00-------------------------
........TGAAGGCTACTTAGAAAAGGACGGCT........................................................................................................................................................................................................................2614.004.00--4.00----------------------------
........................AAGGACGGCTCCTTATTAAC..............................................................................................................................................................................................................203.000.00--------2.00-------------------1.00--
.......ATGAAGGCTACTTAGAAAAGGACGG..........................................................................................................................................................................................................................2512.002.00------------2.00------------------
........TGAAGGCTACTTAGAAAAGGACGGCTC.......................................................................................................................................................................................................................2712.002.00--2.00----------------------------
.....................................................................................................................................ACCTGGTTTTGCCTCTGA...................................................................................................182.000.00-------2.00-----------------------
......TATGAAGGCTACTTAGAAAAGGACGGC.........................................................................................................................................................................................................................2712.002.00--2.00----------------------------
......................AAAAGGACGGCTCCTCTA..................................................................................................................................................................................................................182.000.00------------------1.001.00-----------
..........AAGGCTACTTAGAAAAGGACGGCT........................................................................................................................................................................................................................2411.001.00--------------------------1.00----
................ACTTAGAAAAGGACGGCTC.......................................................................................................................................................................................................................1911.001.00------------------------1.00------
..............................................................GCCCCGCAGGTAAAAAAGC.........................................................................................................................................................................191.000.00---------1.00---------------------
..........AAGGCTACTTAGAAAAGGACGGC.........................................................................................................................................................................................................................2311.001.00---------------------1.00---------
....................AGAAAAGGACGGCTCCTTCTTT................................................................................................................................................................................................................221.000.00--------------1.00----------------
......................AAAAGGACGGCTCCTTA...................................................................................................................................................................................................................1711.001.00----------1.00--------------------
......TATGAAGGCTACTTAGAAAAGGACGGCTC.......................................................................................................................................................................................................................2911.001.00--1.00----------------------------
..............CTACTTAGAAAAGGAGCA..........................................................................................................................................................................................................................181.000.00--------------------1.00----------
..........AAGGCTACTTAGAAAAGGACGGCTCCTT....................................................................................................................................................................................................................2811.001.00-----------------------1.00-------
............................................................................................................................................................AACCGAAATATCTTACAA............................................................................181.000.00-----------------------------1.00-
.......ATGAAGGCTACTTAGAAAAGGACGGC.........................................................................................................................................................................................................................2611.001.00--1.00----------------------------
.....................................................................................................................................................................................TGGGAAAGGAAATTGTAAAG.................................................201.000.00---------1.00---------------------
.........................................................................................................................................................................................AAAGGAAATTGTTTA..................................................1501.001.00----------1.00--------------------
......TATGAAGGCTACTTAGAAAAGGACGGCT........................................................................................................................................................................................................................2811.001.00--1.00----------------------------
.........................................................................AAAATAGTAATTAAGAAGGTG............................................................................................................................................................211.000.00-----------1.00-------------------
...................................CTTATTTCACTCCACGGCC....................................................................................................................................................................................................191.000.00---------------------------1.00---
.................CTTAGAAAAGGACGGCTCCTTATT.................................................................................................................................................................................................................2411.001.00-------------------------1.00-----
........TGAAGGCTACTTAGAAAAGGACGG..........................................................................................................................................................................................................................2411.001.00--1.00----------------------------
....................AGAAAAGGACGGCTCCTTATTTC...............................................................................................................................................................................................................2311.001.00-----------------1.00-------------
...................................................................................................................GCAGGAAAGGTGGCC........................................................................................................................1590.110.11------------------------------0.11

Antisense strand
GTCCACTATGAAGGCTACTTAGAAAAGGACGGCTCCTTATTTCACTCCACGTAAGTAATTATGCCCCGCAGGTAAAATAGTAATTAAGAATCCACTCACTTATGCCAGCTCTCCAGCAGGAAAGGTGGCCTGTACCTGGTTTTGCCTCTTTTACAAAACCGAAATATCTTATTTCCTTCTTTGGGAAAGGAAATTGTTTAAAGCCAGTTTTATATAGCGAGCGAGGCCTTTGAAGGTCTTGTTGGAAACA
...............................................................................................................(((....)))....((((........(((((((.........))))))).(((((..((.((((((.....))))))..))..)))))...))))............................................
...............................................................................................................112.............................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR029128(GSM416757)
H520. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
GSM339996(GSM339996)
hues6Neuron. (cell line)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR189782SRR390723(GSM850202)
total small RNA. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
.........................................................................................................................................................................................AAAGGAAATTGTTTATCGA.............................................. 19011.000.00-3.00-7.001.00--------------------------
.........................................................................................................................................................................................AAAGGAAATTGTTTATCG............................................... 1803.000.00-3.00-----------------------------
......................................................................................................................................CCTGGTTTTGCCTCTAACT................................................................................................. 191.000.00-------1.00-----------------------
..........................................................................................................................................TCGGTTTTGTAAAAGAGGCAAAAC........................................................................................ 2411.001.00----------------------1.00--------
....................................................................................................................................................TTTTACAAAACCGAAATAA................................................................................... 191.000.00----------------1.00--------------
...............................................................................................................................................TAAGATATTTCGGTTTTGTAAAAGAGGC............................................................................... 2811.001.00--1.00----------------------------
................................................................................................................CCAGCAGGAAAGGTGGCGC....................................................................................................................... 191.000.00---------------1.00---------------
................................................................................................................................................TAAGATATTTCGGTTTTGTAAAAGAGG............................................................................... 2711.001.00--1.00----------------------------