ID: uc003sur.2_intron_3_0_chr7_19769062_r.5p
GENE: (1)
chr7:19812990-19813239-


(1)
B-CELL 		(2)
BRAIN 		(8)
BREAST 		(11)
CELL-LINE 		(5)
CERVIX 		(5)
HEART 		(2)
LIVER 		(2)
OTHER 		(37)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCCTCTCCGCTGGATAGAAGCCCAGAAAGGAGCCACGGGGAGAAGCGGAGGTAGGGGTCGCCTGGATTTCTGTTGCTGCGGTCCGGGGGCGGGGCGGATCAAAGGCCAGCCAAGAGTACTGGTCCTGGATCTACAAATACATTAGGCTTTTTCCTCCTCCGTCAACCTCCTAAACCCCAATGAGGTCATAGCAATGAAAGAGAATCAGCTCGAGAGAAAGGAGGAGGAAGAGGACGACGACGAGGGAGAA
...............................................................................(((.((((((.((((((((((...((((((.........))))))...))))).............)))....)).))))))...)))...................................................................................
..............................................................................79........................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR040039(GSM532924)
G531T. (cervix)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532883(GSM532883)
G871N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR040031(GSM532916)
G013T. (cervix)		TAX577453(Rovira)
total RNA. (breast)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
...................................................................................CGGGGGCGGGGCGGACTGT....................................................................................................................................................19041.001.006.003.005.00--2.00--2.00-1.00--2.00-2.001.002.001.00----------1.00--1.001.00----1.00-1.00-1.001.00-1.00-1.001.00--1.001.00--------1.00--1.00------------
...................................................................................CGGGGGCGGGGCGGAC.......................................................................................................................................................1608.001.00----------1.00---------------1.00---1.00--------1.00-------------1.00-1.00-1.00----1.00--------------
..................................................................................CCGGGGGCGGGGCGGACTGT....................................................................................................................................................206.000.00------3.001.00-1.00-----------------1.00-------------------------------------------------
...................................................................................CGGGGGCGGGGCGGACTG.....................................................................................................................................................1805.001.00----1.00---1.00---1.00---------------1.00-------------------------------1.00----------------
..................................................................................CCGGGGGCGGGGCGGACTG.....................................................................................................................................................193.000.00-------1.00--------------------------------------------------1.00-----------1.00------
......................................................................................................................................................................................................................................AGGACGACGACGAGGGAG..1823.003.00----------------------1.50------------------1.00-----------------------------0.50-----
...................................................................................CGGGGGCGGGGCGGACTGG....................................................................................................................................................1902.001.00-----2.00-----------------------------------------------------------------------
.................................................................................TCCGGGGGCGGGGCGGACTGT....................................................................................................................................................2112.001.00-2.00---------------------------------------------------------------------------
....................................................................................GGGGGCGGGGCGGATTGT....................................................................................................................................................182.000.00----2.00------------------------------------------------------------------------
..................................................................................CCGGGGGCGGGGCGGACT......................................................................................................................................................182.000.00--------------2.00--------------------------------------------------------------
.................................................................................TCCGGGGGCGGGGCGGAC.......................................................................................................................................................1812.001.00---------------------2.00-------------------------------------------------------
..................................................................................CCGGGGGCGGGGCGGAC.......................................................................................................................................................172.000.00-------------------2.00---------------------------------------------------------
...................................................................................CGGGGGCGGGGCGGACT......................................................................................................................................................1702.001.00---------1.00---------------------1.00---------------------------------------------
.....................................GGGAGAAGCGGAGGTAGG...................................................................................................................................................................................................1812.002.00--------------------1.00-----------------------------------1.00--------------------
....................................................................................GGGGGCGGGGCGGATTCTC...................................................................................................................................................191.000.00--------------------------------------------1.00--------------------------------
...................................................................................................................................................TTTTTCCTCCTCCGTTAA.....................................................................................181.000.00---1.00-------------------------------------------------------------------------
...................................................................................CGGGGGCGGGGCGGA........................................................................................................................................................1501.001.00---------------------------------------------------------------1.00-------------
...................................................................................................................................................TTTTTCCTCCTCCGTTAAT....................................................................................191.000.00---1.00-------------------------------------------------------------------------
.................................................................................TCCGGGGGCGGGGCGGACT......................................................................................................................................................1911.001.00--------------------------------------------------1.00--------------------------
..................................................................................CCGGGGGCGGGGCGGACTC.....................................................................................................................................................191.000.00---------1.00-------------------------------------------------------------------
.......................................................................................................................................................................................................................................GGACGACGACGAGGGGTAA191.000.00-----------------------------------------------------------1.00-----------------
.................................................................................TCCGGGGGCGGGGCGGA........................................................................................................................................................1711.001.00------------------------------------1.00----------------------------------------
................................................................................GTCCGGGGGCGGGGCGGAG.......................................................................................................................................................191.000.00-----------------------------------1.00-----------------------------------------
......................................GGAGAAGCGGAGGTAGGA..................................................................................................................................................................................................181.000.00------------1.00----------------------------------------------------------------
..............TAGAAGCCCAGAAAGCTGT.........................................................................................................................................................................................................................191.000.00---1.00-------------------------------------------------------------------------
................................................................................................................................................................................................................................AGGAAGAGGACGACGAGGAG......201.000.00------------------------------------------------------------------1.00----------
................................................................................GTCCGGGGGCGGGGCGGACTGT....................................................................................................................................................221.000.00-----------------------1.00-----------------------------------------------------
..................................................................................CCGGGGGCGGGGCGGACGG.....................................................................................................................................................191.000.00-------1.00---------------------------------------------------------------------
....................................................................................................................................................................ACCTCCTAAACCCCAATAAAG.................................................................211.000.00---1.00-------------------------------------------------------------------------
....................................................................................................................................................................................................................AGAGAAAGGAGGAGGTTGG...................191.000.00-------------------------------------1.00---------------------------------------
....................................................................................GGGGGCGGGGCGGATTG.....................................................................................................................................................171.000.00----1.00------------------------------------------------------------------------
................................................................................GTCCGGGGGCGGGGCGGAC.......................................................................................................................................................191.000.00---------------------------------------------------------------------1.00-------
....................................................................................................................................................................................................................AGAGAAAGGAGGAGGCATA...................191.000.00-------------------------------------------------1.00---------------------------
..................................................................................CCGGGGGCGGGGCGGACTGG....................................................................................................................................................201.000.00-------------------------1.00---------------------------------------------------
..................................................................................................................................................................................................................CGAGAGAAAGGAGGAGGAGT....................201.000.00------1.00----------------------------------------------------------------------
............................GGAGCCACGGGGAGAGTT............................................................................................................................................................................................................181.000.00------------------------1.00----------------------------------------------------
...................................CGGGGAGAAGCGGAGCC......................................................................................................................................................................................................171.000.00-----------------------------------------------------------------1.00-----------
.....................................................................................GGGGCGGGGCGGATC......................................................................................................................................................1571.001.00-----------1.00-----------------------------------------------------------------
............................................................................................................................................................................................................................GAGGAGGAAGAGGACATC............181.000.00-----------1.00-----------------------------------------------------------------
...........................................................................................................................................................................................................................GGAGGAGGAAGAGGACGTCC...........201.000.00--------------------------------------------------------------------1.00--------
......................................................................................................................................................................................................................................AGGACGACGACGAGGGA...1720.500.50------------------------------------------------------------------------0.50----
...........................................................................................................................................................................................................................GGAGGAGGAAGAGGACGAC............1940.250.25--------------------------------------------------------------------------0.25--
............................................................................................................................................................................................................................GAGGAGGAAGAGGACGAC............1840.250.25-------------------------------------------------------------------------0.25---
..................................................................................................................AGTACTGGTCCTGGA.........................................................................................................................1550.200.20---------------------------------------------------------------------------0.20-
.......................................GAGAAGCGGAGGTAG....................................................................................................................................................................................................1560.170.17-------------------------0.17---------------------------------------------------
....................................................................................GGGGGCGGGGCGGATC......................................................................................................................................................1660.170.17-----------0.17-----------------------------------------------------------------
....................................................................................GGGGGCGGGGCGGATCGTCC..................................................................................................................................................2060.170.17------------------------0.17----------------------------------------------------
................................................................................GTCCGGGGGCGGGGCG..........................................................................................................................................................1670.140.14----------------------------------------------------------------------------0.14

Antisense strand
CCCTCTCCGCTGGATAGAAGCCCAGAAAGGAGCCACGGGGAGAAGCGGAGGTAGGGGTCGCCTGGATTTCTGTTGCTGCGGTCCGGGGGCGGGGCGGATCAAAGGCCAGCCAAGAGTACTGGTCCTGGATCTACAAATACATTAGGCTTTTTCCTCCTCCGTCAACCTCCTAAACCCCAATGAGGTCATAGCAATGAAAGAGAATCAGCTCGAGAGAAAGGAGGAGGAAGAGGACGACGACGAGGGAGAA
...............................................................................(((.((((((.((((((((((...((((((.........))))))...))))).............)))....)).))))))...)))...................................................................................
..............................................................................79........................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR040039(GSM532924)
G531T. (cervix)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532883(GSM532883)
G871N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR040031(GSM532916)
G013T. (cervix)		TAX577453(Rovira)
total RNA. (breast)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
..............................................................................CGGTCCGGGGGCGGGGCGG......................................................................................................................................................... 191.000.00-------1.00---------------------------------------------------------------------
............................................................................TGCGGTCCGGGGGCGGTTTT.......................................................................................................................................................... 201.000.00--------------------1.00--------------------------------------------------------
...................................................................................................CAAAGGCCAGCCAAGAGCAC................................................................................................................................... 201.000.00----------------------------------------------1.00------------------------------
....................................................................................................................GTAGATCCAGGACCAGTA.................................................................................................................... 1811.001.00----------------------------------1.00------------------------------------------
.................................................................................TCCGGGGGCGGGGCGGCC....................................................................................................................................................... 181.000.00------------------1.00----------------------------------------------------------
..................................................................................................................................................................................................................................GAAGAGGACGACGACGAGGGG... 211.000.00------------------------------------------------------1.00----------------------
..............................................................................CGGTCCGGGGGCGGGGGGGG........................................................................................................................................................ 201.000.00----------------1.00------------------------------------------------------------
...............................................................................GGTCCGGGGGCGGGGTAT......................................................................................................................................................... 181.000.00----------1.00------------------------------------------------------------------
...................................................................................................................................................TTTTTCCTCCTCCGTTTTT.................................................................................... 191.000.00-------------------------------------------------------------------1.00---------
.................................................................................CCGCCCCGCCCCCGGA......................................................................................................................................................... 1660.170.17-----------------------0.17-----------------------------------------------------