ID: uc003stv.2_intron_21_0_chr7_17930108_r.3p
GENE: (4)
chr7:17930058-17930307-


(2)
BREAST
(7)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
HELA
(6)
OTHER
(3)
SKIN

Sense strand
GATACCAGAATAATTTAAAAATGTTTGAAATGGTTTTTAGTATGTTGATGTTTTTGTAATGAGGGCAGGTATTTACCACCATAAATTAATACGTAGAGAGTAAATATAAATTGGTAGATACAGCATACTTTTTTAGTTTACCACTGTAACTTTTTAAATCCTAAAATGTTGTAATTTTTTTTCCAATATTTTTGTTATAGGTTATCCAGTTTTCCTTGAGGGATTATGTCCAGTATTGGTATTATACACT
.....................................................................................................................................((((.....))))..................(((((((.((......)).)))))))............................................................
.............................................................................................................................126.............................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189786SRR189787SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189783SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR040025(GSM532910)
G613T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
......................................................................................................................................................................TGTTGTAATTTTTTTTTTTG................................................................2010.000.0010.00--------------------
......................................................................................................................................................................TGTTGTAATTTTTTTTTTGT................................................................209.000.007.00-------1.00-------1.00----
......................................................................................................................................................................TGTTGTAATTTTTTTATTG.................................................................196.000.004.002.00-------------------
......................................................................................................................................................................TGTTGTAATTTTTTTTAG..................................................................186.000.005.001.00-------------------
......................................................................................................................................................................TGTTGTAATTTTTTTTTGTT................................................................204.000.001.00-1.00------1.00-1.00---------
.............................................................................................................................................................................ATTTTTTTTCCAATATTTCAG........................................................214.000.00-3.00----------1.00--------
......................................................................................................................................................................TGTTGTAATTTTTTTTCTG.................................................................194.000.00-4.00-------------------
......................................................................................................................................................................TGTTGTAATTTTTTTTCGTTT...............................................................213.000.00--2.001.00-----------------
......................................................................................................................................................................TGTTGTAATTTTTTTTTCG.................................................................193.000.003.00--------------------
.............................................................................................................................................................................ATTTTTTTTCCAATATTTCA.........................................................203.000.00-1.002.00------------------
......................................................................................................................................................................TGTTGTAATTTTTTTTTTCG................................................................202.000.001.001.00-------------------
......................................................................................................................................................................TGTTGTAATTTTTTTTATA.................................................................192.000.002.00--------------------
......................................................................................................................................................................TGTTGTAATTTTTTTTCGTTC...............................................................212.000.00--1.001.00-----------------
......................................................................................................................................................................TGTTGTAATTTTTTTTTTGG................................................................202.000.002.00--------------------
......................................................................................................................................................................TGTTGTAATTTTTTTTCTGTT...............................................................211.000.00---1.00-----------------
......................................................................................................................................................................TGTTGTAATTTTTTTTTTAT................................................................201.000.001.00--------------------
...............................................................................................................................................................................................................AGTTTTCCTTGAGGGATTATGTCCAGTA...............2811.001.00-----1.00---------------
......................................................................................................................................................................TGTTGTAATTTTTTTATTA.................................................................191.000.00--1.00------------------
......................................................................................................................................................................TGTTGTAATTTTTTTTCTTG................................................................201.000.00-1.00-------------------
......................................................................................................................................................................TGTTGTAATTTTTTTTATG.................................................................191.000.001.00--------------------
............................................................................................................................................................AATCCTAAAATGTTGTCAGG..........................................................................201.000.00---------------1.00-----
..............................................................................................................TTGGTAGATACAGCATACTTTTTTAGTTTACCAC..........................................................................................................3411.001.00------1.00--------------
..................................................................................................................................TTTTAGTTTACCACTTAA......................................................................................................181.000.00----------1.00----------
..............................................................................................................................................................................TTTTTTTTCCAATATTTTCTTG......................................................221.000.00-------1.00-------------
....................ATGTTTGAAATGGTTTTTAGTATGTTG...........................................................................................................................................................................................................2711.001.00--------------1.00------
...........................................................................................CGTAGAGAGTAAATATAAATTGG........................................................................................................................................2311.001.00-----------------1.00---
...................................................................................................................................................................................TTTCCAATATTTTTGTTAGGT..................................................211.000.00----1.00----------------
...........................................................................................................................................................................................................ATCCAGTTTTCCTTGGACT............................191.000.00-------------1.00-------
......................................................................................................................................................................TGTTGTAATTTTTTTTTAAG................................................................201.000.001.00--------------------
......................................................................................................................................................................TGTTGTAATTTTTTTTATAC................................................................201.000.001.00--------------------
......................................................................................................................................................................TGTTGTAATTTTTTTTCTTTG...............................................................211.000.001.00--------------------
......................GTTTGAAATGGTTTTTAG..................................................................................................................................................................................................................1820.500.50------------------0.50--
................................................................................................................................................................................................................GTTTTCCTTGAGGGATT.........................1730.330.33-------------------0.33-
......................................................................................................................................................TTTTTAAATCCTAAAATG..................................................................................1850.200.20--------------------0.20

Antisense strand
GATACCAGAATAATTTAAAAATGTTTGAAATGGTTTTTAGTATGTTGATGTTTTTGTAATGAGGGCAGGTATTTACCACCATAAATTAATACGTAGAGAGTAAATATAAATTGGTAGATACAGCATACTTTTTTAGTTTACCACTGTAACTTTTTAAATCCTAAAATGTTGTAATTTTTTTTCCAATATTTTTGTTATAGGTTATCCAGTTTTCCTTGAGGGATTATGTCCAGTATTGGTATTATACACT
.....................................................................................................................................((((.....))))..................(((((((.((......)).)))))))............................................................
.............................................................................................................................126.............................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189786SRR189787SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189783SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR040025(GSM532910)
G613T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.........................................ATGTTGATGTTTTTGTTG............................................................................................................................................................................................... 181.000.001.00--------------------
..............................................................................................................................................................TCCTAAAATGTTGTAACTTT........................................................................ 201.000.00----1.00----------------