ID: uc003sti.2_intron_8_0_chr7_16676081_r.5p
GENE: (1)
chr7:16684932-16685181-


(1)
AGO2.ip 		(5)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(16)
CELL-LINE 		(7)
CERVIX 		(3)
HEART 		(3)
HELA 		(5)
LIVER 		(3)
OTHER 		(21)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
AGGCGAGCTGACCCAGGAGGAGAAGGAGCTACTGGAAGTCATCGGGAAAGGTACGGGTGCTGGGCTGCGACGCGGCCGCGGCCAGCCTGGCCGGGGGGCGTGGCGGAGCCCGGGGGGCGCTCCTGGCCTGGGTGACCTTTGGCTGCGGTTCTGCAAGGTTTGCAGCCTGGAACCGGGAAAGAGCGTTTCTCCCTTTGGTCTGGGAAAGGTTGCAGGGGCGGAGAGGTGGGGAGGCAGAAGCAGTGCTGGG
.........................................................................................(((....)))...((((((((.((((....)))).((((.((....))...))))..))))))))................................................................................................
.......................................................................................88..........................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040019(GSM532904)
G701T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM339994(GSM339994)
hues6. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM532885(GSM532885)
G850N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553574(SRX182780)
source: Heart. (Heart)		GSM532872(GSM532872)
G652T. (cervix)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR343335SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
............................................................................................GGGGGGCGTGGCGGACTGT...........................................................................................................................................1918.003.002.00------2.00-----------------------1.00-1.00-1.00------------------------1.00-----------
...........................................................................................CGGGGGGCGTGGCGGAC..............................................................................................................................................1717.001.002.00-2.00--------------------------------------1.00----------1.00----1.00--------------
................................TGGAAGTCATCGGGAAAG........................................................................................................................................................................................................1816.006.00------3.00--------1.00---------------------------1.00------1.00---------------------
...........................................................................................CGGGGGGCGTGGCGGACTGT...........................................................................................................................................2015.001.00-2.00--------------------------------------------1.001.00--------1.00---------------
............................................................................................GGGGGGCGTGGCGGA...............................................................................................................................................1513.003.00--1.00--1.00---------------------------------------------1.00--------------------
...............................CTGGAAGTCATCGGGAAAG........................................................................................................................................................................................................1913.003.00----------------2.00-----1.00-------------------------------------------------
...........................................................................................CGGGGGGCGTGGCGGACT.............................................................................................................................................1813.001.00-1.00-------------1.00--------------------------------------------------1.00-----
........................................................................................................GGAGCCCGGGGGGCGCCG................................................................................................................................182.000.00------------------------1.00-----------------------------1.00-----------------
.................AGGAGAAGGAGCTACTGGAAGTCAT................................................................................................................................................................................................................2512.002.00-------------------2.00----------------------------------------------------
................................................................................................................................................................................................................GTTGCAGGGGCGGAGAGG........................1812.002.00---------2.00--------------------------------------------------------------
..............AGGAGGAGAAGGAGCTACTGG.......................................................................................................................................................................................................................2112.002.00---2.00--------------------------------------------------------------------
............................................................................................GGGGGGCGTGGCGGACTG............................................................................................................................................1812.003.00-----------2.00------------------------------------------------------------
..............................................................................................................................................CTGCGGTTCTGCAAGGTT..........................................................................................1812.002.00----2.00-------------------------------------------------------------------
............CCAGGAGGAGAAGGAGAACA..........................................................................................................................................................................................................................202.000.00--------------------2.00---------------------------------------------------
............................................................................................GGGGGGCGTGGCGGAC..............................................................................................................................................1612.003.00--1.00--1.00------------------------------------------------------------------
.....................GAAGGAGCTACTGGAAGTCATCGGGAAAG........................................................................................................................................................................................................2911.001.00------------------1.00-----------------------------------------------------
...............................................................................................................................................................................................CCTTTGGTCTGGGAAAGGTTG......................................2111.001.00------------------------------------------------1.00-----------------------
.......................................................................................................CGGAGCCCGGGGGGCGAGGG...............................................................................................................................2021.000.50------------1.00-----------------------------------------------------------
...................................................................................................GTGGCGGAGCCCGGGGGG.....................................................................................................................................1811.001.00----------------------------------1.00-------------------------------------
........................................................................................................GGAGCCCGGGGGGCGCCGGC..............................................................................................................................201.000.00-----------------------1.00------------------------------------------------
............................................................................................GGGGGGCGTGGCGGAATGT...........................................................................................................................................1911.003.001.00-----------------------------------------------------------------------
.................AGGAGAAGGAGCTACTGG.......................................................................................................................................................................................................................1811.001.00------------------------------1.00-----------------------------------------
...........................................................................................CGGGGGGCGTGGCGGA...............................................................................................................................................1611.001.00-----1.00------------------------------------------------------------------
...................................................................................................................................................................................................................GCAGGGGCGGAGAGGTAGTA...................201.000.00---------------------------1.00--------------------------------------------
........................................................................................................................................................................................................................GGCGGAGAGGTGGGGAGGCAGAAGCAG.......2711.001.00---1.00--------------------------------------------------------------------
........................................................................................GGCCGGGGGGCGTGGTC.................................................................................................................................................171.000.00-1.00----------------------------------------------------------------------
..................................................................................................................................GGTGACCTTTGGCTGCGGTT....................................................................................................2011.001.00--------1.00---------------------------------------------------------------
.....................GAAGGAGCTACTGGAAGTCATCGGGAAAGG.......................................................................................................................................................................................................3011.001.00--------------------------------1.00---------------------------------------
.......................................CATCGGGAAAGGTACGGGTGCTGGGCTCTG.....................................................................................................................................................................................301.000.00--------------------------------------1.00---------------------------------
.....AGCTGACCCAGGAGGAGAAGG................................................................................................................................................................................................................................2111.001.00---------1.00--------------------------------------------------------------
........................................................................................................GGAGCCCGGGGGGCGA..................................................................................................................................161.000.00-------------------------------------------------1.00----------------------
..........ACCCAGGAGGAGAAGAGAC.............................................................................................................................................................................................................................191.000.00----------------------------1.00-------------------------------------------
.................AGGAGAAGGAGCTACTGGAAGTCA.................................................................................................................................................................................................................2411.001.00----------------------------------------------------------1.00-------------
................................................AGGTACGGGTGCTGGGCTG.......................................................................................................................................................................................1911.001.00-----------------1.00------------------------------------------------------
...........CCCAGGAGGAGAAGGCGGC............................................................................................................................................................................................................................191.000.00----------------------------------------1.00-------------------------------
.....................................................................................................................................................................................................................AGGGGCGGAGAGGTGGGGAGGCAGAAGCAGTGC....3311.001.00-----------------------------1.00------------------------------------------
......GCTGACCCAGGAGGAGAAGG................................................................................................................................................................................................................................2011.001.00-----------------------------------------------------------------1.00------
............................................................................................GGGGGGCGTGGCGGACAG............................................................................................................................................1811.003.00---------------------------------------------------------------1.00--------
..............................................................................................................................................................................................CCCTTTGGTCTGGGAAAGGTTGCAGGG.................................2711.001.00--------------------------1.00---------------------------------------------
.......................AGGAGCTACTGGAAGTCATCGGGAAAG........................................................................................................................................................................................................2711.001.00---------------------------------------1.00--------------------------------
....................................................................................................................................................................GCCTGGAACCGGGAAGCT....................................................................181.000.00---------------------1.00--------------------------------------------------
..............................................................................................................................................................................................CCCTTTGGTCTGGGAAAGGT........................................2011.001.00-----------------------------------------------------1.00------------------
..................................................GTACGGGTGCTGGGCTGAG.....................................................................................................................................................................................191.000.00----------1.00-------------------------------------------------------------
.............................................................................................................................................................GTTTGCAGCCTGGAACCGG..........................................................................1911.001.00----------1.00-------------------------------------------------------------
....................................AGTCATCGGGAAAGGTACTG..................................................................................................................................................................................................201.000.00--------------1.00---------------------------------------------------------
...........................................................................................CGGGGGGCGTGGCGGACTA............................................................................................................................................1911.001.00-----------------1.00------------------------------------------------------
........................................ATCGGGAAAGGTACGGGTG...............................................................................................................................................................................................1911.001.00-------------------------------------1.00----------------------------------
..............................ACTGGAAGTCATCGGGA...........................................................................................................................................................................................................1711.001.00-----------------------------------------------------------1.00------------
...........................................................................................................GCCCGGGGGGCGCTCTCGG............................................................................................................................191.000.00---------------------------------------------1.00--------------------------
............................................................................................GGGGGGCGTGGCGGATCT............................................................................................................................................1811.003.00------------1.00-----------------------------------------------------------
................................................................................GCCAGCCTGGCCGGGGGC........................................................................................................................................................181.000.00-------------------------------------------------------1.00----------------
......................................................................................................................................................................CTGGAACCGGGAAAGAGCGT................................................................2011.001.00----------1.00-------------------------------------------------------------
......................................................................................................................................................................CTGGAACCGGGAAAGAGC..................................................................1811.001.00-------------------------------------------------------------1.00----------
....................................................ACGGGTGCTGGGCTGCGACGC.................................................................................................................................................................................2111.001.00-------------------------1.00----------------------------------------------
...............................................................................................................................................TGCGGTTCTGCAAGGTTTAG.......................................................................................201.000.00--------------------------------------------1.00---------------------------
................GAGGAGAAGGAGCTACTGGAAA....................................................................................................................................................................................................................221.000.00--------------1.00---------------------------------------------------------
..............................................................................................................................................................................................................AGGTTGCAGGGGCGGAGA..........................1811.001.00--------1.00---------------------------------------------------------------
.............................................................................................GGGGGCGTGGCGGAGCGGA..........................................................................................................................................191.000.001.00-----------------------------------------------------------------------
.......................................................................................................CGGAGCCCGGGGGGCGAGGC...............................................................................................................................2021.000.50------------------------------------1.00-----------------------------------
.......................................................................................................CGGAGCCCGGGGGGCGAGG................................................................................................................................1921.000.50--------------------------------------------------------------1.00---------
...................GAGAAGGAGCTACTGGAAG....................................................................................................................................................................................................................1920.500.50-------------------------------------------------------------------0.50----
.......................................................................................................CGGAGCCCGGGGGGCG...................................................................................................................................1620.500.50--------------------------------------------------------------------0.50---
...........................................................................................CGGGGGGCGTGGCGG................................................................................................................................................1560.330.33----------------------0.17-----------------------------------------------0.17-
.....................................................................................CCTGGCCGGGGGGCG......................................................................................................................................................1580.250.25-----------------------0.12----------------------------------------------0.12-
..................................................................................................................................................................................................TTGGTCTGGGAAAGGT........................................1640.250.25-----------------------------------------------------------------------0.25
...........................................................................................CGGGGGGCGTGGCGGGGA.............................................................................................................................................1860.170.33-0.17----------------------------------------------------------------------

Antisense strand
AGGCGAGCTGACCCAGGAGGAGAAGGAGCTACTGGAAGTCATCGGGAAAGGTACGGGTGCTGGGCTGCGACGCGGCCGCGGCCAGCCTGGCCGGGGGGCGTGGCGGAGCCCGGGGGGCGCTCCTGGCCTGGGTGACCTTTGGCTGCGGTTCTGCAAGGTTTGCAGCCTGGAACCGGGAAAGAGCGTTTCTCCCTTTGGTCTGGGAAAGGTTGCAGGGGCGGAGAGGTGGGGAGGCAGAAGCAGTGCTGGG
.........................................................................................(((....)))...((((((((.((((....)))).((((.((....))...))))..))))))))................................................................................................
.......................................................................................88..........................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040019(GSM532904)
G701T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM339994(GSM339994)
hues6. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM532885(GSM532885)
G850N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553574(SRX182780)
source: Heart. (Heart)		GSM532872(GSM532872)
G652T. (cervix)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR343335SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
.............................................................................................................................................GCTGCGGTTCTGCAAGGTTGTG....................................................................................... 221.000.00-------------1.00----------------------------------------------------------
..............................................................................................................................................CTGCGGTTCTGCAAGGTTTGGT...................................................................................... 2211.000.00-------------1.00----------------------------------------------------------
....................AGAAGGAGCTACTGGAGTCC.................................................................................................................................................................................................................. 201.000.00----1.00-------------------------------------------------------------------
.....................................................................................................................................................................................CAGACCAAAGGGAGAAACGCT................................................ 2111.001.00---------------------1.00--------------------------------------------------
....................................................................................................................GCGCTCCTGGCCTGGGTG.................................................................................................................... 181.000.00------------------1.00-----------------------------------------------------
..............................................................................................................AGGCCAGGAGCGCCCCCCG......................................................................................................................... 1911.001.00--------1.00---------------------------------------------------------------
....................................................................................GCCTGGCCGGGGGGCGGTCC.................................................................................................................................................. 201.000.00----------------------------------------------------------------1.00-------
..................................................................................................................................................................................................................CTCTCCGCCCCTGCA......................... 1530.330.33---------------------------------------------------------------------0.33--