ID: uc003sti.2_intron_8_0_chr7_16676081_r.3p
GENE: (1)
chr7:16676031-16676280-


(1)
BREAST 		(10)
CELL-LINE 		(1)
HEART 		(2)
HELA 		(1)
LIVER 		(1)
OTHER 		(2)
SKIN

Sense strand
TTAGTTTCTGTAAATCTATTCTACTGGACAATTACTTTGTAAAATAAATAGTATGTGATTGGATGTTTCATTTCTTAGCAACCTACACTGACTAGATGTACTCTTACAGATAACTCCTTAAGGTTTATTTCCTTGATGTTAGATTTTTCTCTTATTCTAGTGACGAATAACCTTACTTTTCATCTTTTTTTTTTTTTTAGGTACTGTCCAAGAAGCTGGAACATTATTATCCAGCAAGAATGTTCGTGTC
...........................................................................................................((((.......(((((((....((((.((((..(((....)))..))))..)).)).....)))))))......)))).................................................................
......................................................................................................103..............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189784SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTCAG..................................................2519.000.009.003.005.002.00----------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTTCAG.................................................2615.000.008.00-5.001.001.00---------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTCAG...................................................2413.000.006.003.004.00-----------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTCAG......................................................2113.000.008.001.003.00---1.00-------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTCAG.....................................................2211.000.006.002.003.00-----------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTCAG....................................................2310.000.005.002.00-3.00----------------
................................................................................................................................................................................TTTTCATCTTTTTTTTTTTCTT....................................................229.000.005.00-4.00-----------------
....................................................................................................................................................................................CATCTTTTTTTTTTTTTTAGG.................................................2137.337.331.333.000.672.33----------------
................................................................................................................................................................................TTTTCATCTTTTTTTTTTTCTTT...................................................237.000.002.00-4.00-1.00---------------
.....................................................................................................................................................................AATAACCTTACTTTTCATCTTTTTTTTTTTTAG....................................................3316.001.00-1.00-4.001.00---------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTTCCAG................................................275.000.004.00-1.00-----------------
....................................................................................................................................................................................CATCTTTTTTTTTTTTTTATAAG...............................................235.000.00-2.00-3.00----------------
.....................................................................................................................................................................AATAACCTTACTTTTCATCTTTTTTTTTTTTTAG...................................................344.000.00-3.00-1.00----------------
.....................................................................................................................................................................AATAACCTTACTTTTCATCTTTTTTTTTTTTTTAG..................................................3514.004.00-2.001.001.00----------------
...................................................................................................................................................................................TCATCTTTTTTTTTTTTTTACG.................................................224.000.002.002.00------------------
..............................................................................................................................................................................ACTTTTCATCTTTTTTTTTTTTTTTTG.................................................273.000.00-2.00-1.00----------------
.....................................................................................................................................................................AATAACCTTACTTTTCATCTTTTTTTTTTAG......................................................313.000.00-2.00-1.00----------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTTTTAG................................................272.000.00--1.001.00----------------
......................................................................................................................................................................................TCTTTTTTTTTTTTTTAGGTAGTTT...........................................252.000.00-----2.00--------------
.....................................................................................................................................................................AATAACCTTACTTTTCATCTTTTTTTTTAG.......................................................302.000.001.001.00------------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTCCAG.................................................262.000.001.00-1.00-----------------
................................................................................................................................................................................TTTTCATCTTTTTTTTTTTTTTAACCC...............................................272.000.00---2.00----------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTCAT..................................................252.000.002.00-------------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTCA...................................................242.000.00---2.00----------------
...................................................................................................................................................................................TCATCTTTTTTTTTTTTTTAG..................................................2161.831.830.330.500.170.83----------------
..................................................................................................................................................................................TTCATCTTTTTTTTTTTTTTAG..................................................2231.671.670.331.000.33-----------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTTTCAT................................................271.000.00-1.00------------------
..................................................................................................................................................................................TTCATCTTTTTTTTTTTTTTAACCG...............................................251.000.00---1.00----------------
......................................................................................................................................................................................TCTTTTTTTTTTTTTTAGGCC...............................................211.000.00-----1.00--------------
......................................................................................................................................................................ATAACCTTACTTTTCATCTTTTTTTTTTTTA.....................................................311.000.00---1.00----------------
..............................................................................................................................................................................ACTTTTCATCTTTTTTTTTTTTTG....................................................241.000.00-1.00------------------
.....................................................................................................................................................................AATAACCTTACTTTTCATCTTTTTTTTTTTA......................................................3111.001.00---1.00----------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTCG...................................................241.000.001.00-------------------
................................................................................................................................................................................TTTTCATCTTTTTTTTCCTG......................................................201.000.001.00-------------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTTCAGG................................................271.000.001.00-------------------
.....................................................................................................................................................................AATAACCTTACTTTTCATCTTTTTTTTTTTT......................................................3111.001.00-1.00------------------
......................................................................................................................................................................................TCTTTTTTTTTTTTTTAGGGAAG.............................................231.000.00---1.00----------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTCCAG.......................................................201.000.001.00-------------------
......................................................................................................................................................................ATAACCTTACTTTTCATCTTTTTTTTTTA.......................................................291.000.00---1.00----------------
....................................................................................................................................................................................CATCTTTTTTTTTTTTTTAGTAG...............................................231.000.00---1.00----------------
....................................................................................................................................................................................CATCTTTTTTTTTTTTTTATACG...............................................231.000.00---1.00----------------
................................................................................................................................................................................TTTTCATCTTTTTTTTTTTTTTAATCC...............................................271.000.00-1.00------------------
........................................................................................................................................................................AACCTTACTTTTCATCTTTTTTTTTTTTTAT...................................................311.000.00---1.00----------------
......................................................................................................................................................................ATAACCTTACTTTTCATCTTTTTTTTTTTTTAG...................................................331.000.00-1.00------------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTCCAG......................................................211.000.001.00-------------------
.............................................................................................................................................................................TACTTTTCATCTTTTTTTTTTTTTTTTG.................................................281.000.00-1.00------------------
.....................................................................................................................................................................AATAACCTTACTTTTCATCTTTTTCTTA.........................................................281.000.00----1.00---------------
......................................................................................................................................................................................TCTTTTTTTTTTTTTTAGGTTAGC............................................241.000.00-----1.00--------------
................................................................................................................................................................................TTTTCATCTTTTTTTTTTTTTTCTCT................................................261.000.00------1.00-------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTCTG...................................................241.000.00-1.00------------------
.......................................................................................................................................................................TAACCTTACTTTTCATCTTTTTTTTTTAG......................................................291.000.00-1.00------------------
..................................................................................................................................................................................................................AGAAGCTGGAACATTTGGA.....................191.000.00--------------1.00-----
.................................................................................................................................................................................................................AAGAAGCTGGAACATTATT......................1911.001.00----------1.00---------
.....................................................................................................................................................................AATAACCTTACTTTTCATCTTTTTTTTTTTAG.....................................................3211.001.00---1.00----------------
..................................................................................................................................................................................TTCATCTTTTTTTTTTTTTTAACCC...............................................251.000.00-1.00------------------
................................................................................................................................................................................TTTTCATCTTTTTTTTTTTTTTCCTT................................................261.000.00---1.00----------------
..............................................................................................................................................................................ACTTTTCATCTTTTTTTTTTTTTTTGTT................................................281.000.00------1.00-------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTCCAG...................................................241.000.001.00-------------------
.............................................................................................................................................................................TACTTTTCATCTTTTTTTTTTTTTATTT.................................................281.000.00----1.00---------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTTATT.................................................261.000.00-1.00------------------
...................................................................................................................................................................................TCATCTTTTTTTTTTTTTTATAT................................................231.000.00---1.00----------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTTTCCG................................................271.000.001.00-------------------
.................................................................................................................................................................................TTTCATCTTTTTTTTTTTTTAGG..................................................231.000.001.00-------------------
.....................................................................................................................................................................AATAACCTTACTTTTCATCTTTTTTTTTTT.......................................................3011.001.00-1.00------------------
................................................................................................................................................................................TTTTCATCTTTTTTTTTTTCTTC...................................................231.000.00--1.00-----------------
......................................................................................................................................................................................TCTTTTTTTTTTTTTTAGGCTGG.............................................231.000.00-----1.00--------------
......................................................................................................................................................................ATAACCTTACTTTTCATCTTTTTTTTTTTTTTA...................................................3311.001.00-1.00------------------
...................................................................................................................................................................................TCATCTTTTTTTTTTTGCG....................................................191.000.001.00-------------------
.....................................................................................................................................................................AATAACCTTACTTTTCATCTTTTTTTAG.........................................................281.000.001.00-------------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTCCAG..................................................251.000.00--1.00-----------------
................................................................................................................................................................................TTTTCATCTTTTTTTTTTTTTTCAG.................................................251.000.001.00-------------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTCT...................................................241.000.001.00-------------------
........................................................................................................................................................................................TTTTTTTTTTTTTTAGGTACAAGC..........................................241.000.00-----1.00--------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTG....................................................231.000.00--1.00-----------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTTTGG.................................................261.000.00---1.00----------------
...........................................................................................................AGATAACTCCTTAAGTGC.............................................................................................................................181.000.00-------------1.00------
.......................................................................................................................AAGGTTTATTTCCTTGT..................................................................................................................171.000.00----1.00---------------
.................................................................................................................................................................................TTTCATCTTTTTTTTTTTTAAAC..................................................231.000.00-1.00------------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTCCG....................................................231.000.00-1.00------------------
................................................................................................................................................................................TTTTCATCTTTTTTTTTTTCTC....................................................221.000.001.00-------------------
........................................................................................................................................................................AACCTTACTTTTCATCTTTTTTTTAG........................................................261.000.00---1.00----------------
..........................................................................................................................................................................................................ACTGTCCAAGAAGCTGGAACATT.........................2311.001.00------------1.00-------
................................................................................................................................................................................................................CAAGAAGCTGGAACATTATTA.....................2111.001.00---------------1.00----
.......................................................................................................................................................................TAACCTTACTTTTCAGT..................................................................171.000.00----1.00---------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTTTAG.................................................261.000.00---1.00----------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTTTCG.................................................261.000.00-1.00------------------
..................................................................................................................................................................................TTCATCTTTTTTTTTTTTTTACCCG...............................................251.000.00--1.00-----------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTAG........................................................191.000.001.00-------------------
......................................................................................................................................................................ATAACCTTACTTTTCATCTTTTTTTTTTTTTA....................................................321.000.00-1.00------------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTTAACAG...............................................281.000.00-1.00------------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTCTG.....................................................221.000.001.00-------------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTTCT..................................................251.000.00-----1.00--------------
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTCAT...................................................241.000.001.00-------------------
...................................................................................................................................................................................TCATCTTTTTTTTTTTTTTATTAG...............................................241.000.001.00-------------------
.................................................................................................................................................................................TTTCATCTTTTTTTTTTTTATG...................................................221.000.00-1.00------------------
..................................................................................CTACACTGACTAGATGTACT....................................................................................................................................................2011.001.00----------------1.00---
...............................................................................................................................................................................CTTTTCATCTTTTTTTTTTTTTTTTAT................................................271.000.001.00-------------------
...................................................................................................................................................................................TCATCTTTTTTTTTTTTTTATTTG...............................................241.000.00--1.00-----------------
.................................................................................................................................................................................TTTCATCTTTTTTTTTTTTTCAAG.................................................241.000.00--1.00-----------------
..........................................................................................................................................................TTCTAGTGACGAATAGC...............................................................................1720.500.50-------0.50------------
..........................................................................................................................................................TTCTAGTGACGAATAGAAA.............................................................................1920.500.50------------------0.50-
..........................................................................................................................................................TTCTAGTGACGAATAGAA..............................................................................1820.500.50-----------------0.50--
...................................................................................................................................................................................TCATCTTTTTTTTTTTTTTAGG.................................................2220.500.50---0.50----------------
..........................................................................................................................................................TTCTAGTGACGAATACA...............................................................................1720.500.50-------0.50------------
..........................................................................................................................................................TTCTAGTGACGAATA.................................................................................1520.500.50-------0.50------------
......................................................................................................................................................................................................AGGTACTGTCCAAGA.....................................1530.330.33-------------------0.33
..............................................................................................................................................................................ACTTTTCATCTTTTTTTTTTT.......................................................2160.170.17------0.17-------------
.....................................................................................................................................................................................ATCTTTTTTTTTTTTTTAGGCTGG.............................................2490.110.11-----0.11--------------
.....................................................................................................................................................................................ATCTTTTTTTTTTTTTTAGGAG...............................................2290.110.11-----0.11--------------
.....................................................................................................................................................................................ATCTTTTTTTTTTTTTTAGGATG..............................................2390.110.11------0.11-------------
.....................................................................................................................................................................................ATCTTTTTTTTTTTTTTAGG.................................................2090.110.11------0.11-------------

Antisense strand
TTAGTTTCTGTAAATCTATTCTACTGGACAATTACTTTGTAAAATAAATAGTATGTGATTGGATGTTTCATTTCTTAGCAACCTACACTGACTAGATGTACTCTTACAGATAACTCCTTAAGGTTTATTTCCTTGATGTTAGATTTTTCTCTTATTCTAGTGACGAATAACCTTACTTTTCATCTTTTTTTTTTTTTTAGGTACTGTCCAAGAAGCTGGAACATTATTATCCAGCAAGAATGTTCGTGTC
...........................................................................................................((((.......(((((((....((((.((((..(((....)))..))))..)).)).....)))))))......)))).................................................................
......................................................................................................103..............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189784SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
.................ATTCTACTGGACAATTTCTG..................................................................................................................................................................................................................... 201.000.00---------1.00----------
..............................................................................................................................ATTTCCTTGATGTTACTCC......................................................................................................... 191.000.00--------1.00-----------
.........................................................................................................ACAGATAACTCCTTACTA............................................................................................................................... 181.000.00-----------1.00--------
......................................GTAAAATAAATAGTATGTCTT............................................................................................................................................................................................... 211.000.00--1.00-----------------
..................................................................................................................................................................................................................................TTATCCAGCAAGAATGCTT..... 191.000.00----1.00---------------