uc003ssj.2_intron_9_0_chr7_12384096

TGTTTGTGTTTTGGCTTGTTTGAGACTAAACTTAAGCAAGAGAGTTGTTGGAGTATTCTTACGTTCTCAGTATTATCTAGAGGGACTATTAGTTAACTATTCAAACTTCAGAGACTTTTGCTTCTATCATAACTAAGTCTCTGAGCAATATGTATGTTCTGTTTTAGCAATCAACCTTTTTTTCTTTGATTTTTTTTTAGCCATTTGTAAATATCCATGTGGAAAAAGTAGGGAGTGTGTTGCCCCAAAC ....................................................................................................(((((.(((((((((((.................)))))))))))..............(((....)))...............)))))............................................................. ..........................................................................................91.....................................................................................................194......................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR039192(GSM494811) K562 cell line is derived from a CML patient . (cell line)	SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast)	SRR343334	TAX577746(Rovira) total RNA. (breast)	SRR189786	SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line)	SRR444060(SRX128908) Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
..........................................................................................................................................................................TCAACCTTTTTTTCTTTAAG............................................................	20		1134.00	0.00	524.00	370.00	157.00	65.00	18.00	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................TCAACCTTTTTTTCTTCAAG............................................................	20		15.00	0.00	-	-	8.00	5.00	2.00	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................CAACCTTTTTTTCTTCAAG............................................................	19		6.00	0.00	1.00	-	4.00	1.00	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................TCAACCTTTTTTTCTTTAGG............................................................	20		5.00	0.00	4.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................TCAACCTTTTTTTCTTTCAG............................................................	20		4.00	0.00	3.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................TCAACCTTTTTTTCTTTACG............................................................	20		3.00	0.00	1.00	-	1.00	1.00	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................CAACCTTTTTTTCTTTACG............................................................	19		3.00	0.00	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................CAACCTTTTTTTCTTTGAG............................................................	19		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACCTTTTTTTCTTTGATTTTTTTA.....................................................	24		2.00	0.00	-	-	-	-	-	2.00	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACCTTTTTTTCTTTGATTTTTTTTCAGC.................................................	28		2.00	0.00	-	-	-	-	-	2.00	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACCTTTTTTTCTTTGGACC..........................................................	19		2.00	0.00	-	-	-	-	-	-	2.00	-	-	-	-	-	-	-
.......................................................................................................................................................................................................................CATGTGGAAAAAGTAAAAA................	19		2.00	0.00	-	-	-	-	-	-	-	-	2.00	-	-	-	-	-
...............................................................................................ACTATTCAAACTTCAAAG.........................................................................................................................................	18		1.00	0.00	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-
..........................................................................................................................................................................................................................GTGGAAAAAGTAGGGAGTGT............	20	1	1.00	1.00	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-
.......................................................................................................................................................................CAATCAACCTTTTTTTCTTTGATTTTTTTTAG...................................................	32		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................TCAACCTTTTTTTCTTGAAG............................................................	20		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................TTTTTCTTTGATTTTTTTGGC...................................................	21		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................TCAACCTTTTTTTCTTTGAA............................................................	20		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................TCAACCTTTTTTTCTTTATTT...........................................................	21		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................CAACCTTTTTTTCTTTAGG............................................................	19		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................TCAACCTTTTTTTCTTCT..............................................................	18		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
.....................................................................................................................................................................................TTCTTTGATTTTTTTTTCTTG................................................	21		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................TCAACCTTTTTTTCTTTGAG............................................................	20		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................TCAACCTTTTTTTCTTTATT............................................................	20		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................................AACCTTTTTTTCTTTGAG............................................................	18		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-
..........................................................................................................................................................................TCAACCTTTTTTTCTTCAAA............................................................	20		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................CAACCTTTTTTTCTTCAGG............................................................	19		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................TCAACCTTTTTTTCTTCAAT............................................................	20		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................TTTTGCTTCTATCATGGCC....................................................................................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-
.......................................................................................................................................................................CAATCAACCTTTTTTTCTTTGATTTTTTTTTAG..................................................	33	1	1.00	1.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................CAACCTTTTTTTCTTTCAG............................................................	19		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACCTTTTTTTCTTTGATTTTTTTCTA...................................................	26		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-
..........................................................................................................................................................................TCAACCTTTTTTTCTTCATG............................................................	20		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................................................................................GGAAAAAGTAGGGAGTGTGGCTT.......	23		1.00	0.00	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-
...............................................................................................................................................................................CTTTTTTTCTTTGATGCG.........................................................	18		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-
............................................................................CTAGAGGGACTATTAGTT............................................................................................................................................................	18	1	1.00	1.00	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-
....................................................................AGTATTATCTAGAGGGACT...................................................................................................................................................................	19	1	1.00	1.00	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-
....................................................................................................TCAAACTTCAGAGACTTT....................................................................................................................................	18	3	0.33	0.33	-	-	-	-	-	-	-	-	-	-	-	-	0.33	-
...................................................................................................................................................................................TTTTCTTTGATTTTTTTTTA...................................................	20	8	0.12	0.12	-	-	-	-	-	-	0.12	-	-	-	-	-	-	-

TGTTTGTGTTTTGGCTTGTTTGAGACTAAACTTAAGCAAGAGAGTTGTTGGAGTATTCTTACGTTCTCAGTATTATCTAGAGGGACTATTAGTTAACTATTCAAACTTCAGAGACTTTTGCTTCTATCATAACTAAGTCTCTGAGCAATATGTATGTTCTGTTTTAGCAATCAACCTTTTTTTCTTTGATTTTTTTTTAGCCATTTGTAAATATCCATGTGGAAAAAGTAGGGAGTGTGTTGCCCCAAAC
....................................................................................................(((((.(((((((((((.................)))))))))))..............(((....)))...............))))).............................................................
..........................................................................................91.....................................................................................................194......................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)

SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)

SRR343334

TAX577746(Rovira)
total RNA. (breast)

SRR189786

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)

..........................................................................................................................................................................TCAACCTTTTTTTCTTTAAG............................................................

1134.00

0.00

524.00

370.00

157.00

65.00

18.00

..........................................................................................................................................................................TCAACCTTTTTTTCTTCAAG............................................................

15.00

0.00

8.00

5.00

2.00

...........................................................................................................................................................................CAACCTTTTTTTCTTCAAG............................................................

6.00

0.00

1.00

4.00

1.00

..........................................................................................................................................................................TCAACCTTTTTTTCTTTAGG............................................................

5.00

0.00

4.00

1.00

..........................................................................................................................................................................TCAACCTTTTTTTCTTTCAG............................................................

4.00

0.00

3.00

1.00

..........................................................................................................................................................................TCAACCTTTTTTTCTTTACG............................................................

3.00

0.00

1.00

...........................................................................................................................................................................CAACCTTTTTTTCTTTACG............................................................

3.00

0.00

1.00

...........................................................................................................................................................................CAACCTTTTTTTCTTTGAG............................................................

2.00

0.00

1.00

.............................................................................................................................................................................ACCTTTTTTTCTTTGATTTTTTTA.....................................................

2.00

0.00

2.00

.............................................................................................................................................................................ACCTTTTTTTCTTTGATTTTTTTTCAGC.................................................

2.00

0.00

2.00

.............................................................................................................................................................................ACCTTTTTTTCTTTGGACC..........................................................

2.00

0.00

2.00

.......................................................................................................................................................................................................................CATGTGGAAAAAGTAAAAA................

2.00

0.00

2.00

...............................................................................................ACTATTCAAACTTCAAAG.........................................................................................................................................

1.00

0.00

1.00

..........................................................................................................................................................................................................................GTGGAAAAAGTAGGGAGTGT............

1.00

.......................................................................................................................................................................CAATCAACCTTTTTTTCTTTGATTTTTTTTAG...................................................

1.00

0.00

1.00

..........................................................................................................................................................................TCAACCTTTTTTTCTTGAAG............................................................

1.00

0.00

1.00

..................................................................................................................................................................................TTTTTCTTTGATTTTTTTGGC...................................................

1.00

0.00

1.00

..........................................................................................................................................................................TCAACCTTTTTTTCTTTGAA............................................................

1.00

0.00

1.00

..........................................................................................................................................................................TCAACCTTTTTTTCTTTATTT...........................................................

1.00

0.00

1.00

...........................................................................................................................................................................CAACCTTTTTTTCTTTAGG............................................................

1.00

0.00

1.00

..........................................................................................................................................................................TCAACCTTTTTTTCTTCT..............................................................

1.00

0.00

1.00

.....................................................................................................................................................................................TTCTTTGATTTTTTTTTCTTG................................................

1.00

0.00

1.00

..........................................................................................................................................................................TCAACCTTTTTTTCTTTGAG............................................................

1.00

0.00

1.00

..........................................................................................................................................................................TCAACCTTTTTTTCTTTATT............................................................

1.00

0.00

1.00

............................................................................................................................................................................AACCTTTTTTTCTTTGAG............................................................

1.00

0.00

1.00

..........................................................................................................................................................................TCAACCTTTTTTTCTTCAAA............................................................

1.00

0.00

1.00

...........................................................................................................................................................................CAACCTTTTTTTCTTCAGG............................................................

1.00

0.00

1.00

..........................................................................................................................................................................TCAACCTTTTTTTCTTCAAT............................................................

1.00

0.00

1.00

...................................................................................................................TTTTGCTTCTATCATGGCC....................................................................................................................

1.00

0.00

1.00

.......................................................................................................................................................................CAATCAACCTTTTTTTCTTTGATTTTTTTTTAG..................................................

1.00

...........................................................................................................................................................................CAACCTTTTTTTCTTTCAG............................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACCTTTTTTTCTTTGATTTTTTTCTA...................................................

1.00

0.00

1.00

..........................................................................................................................................................................TCAACCTTTTTTTCTTCATG............................................................

1.00

0.00

1.00

............................................................................................................................................................................................................................GGAAAAAGTAGGGAGTGTGGCTT.......

1.00

0.00

1.00

...............................................................................................................................................................................CTTTTTTTCTTTGATGCG.........................................................

1.00

0.00

1.00

............................................................................CTAGAGGGACTATTAGTT............................................................................................................................................................

1.00

....................................................................AGTATTATCTAGAGGGACT...................................................................................................................................................................

1.00

....................................................................................................TCAAACTTCAGAGACTTT....................................................................................................................................

0.33

...................................................................................................................................................................................TTTTCTTTGATTTTTTTTTA...................................................

0.12