ID: uc003sqw.1_intron_7_0_chr7_6806509_f.5p
GENE: RSPH10B(8)
chr7:6806459-6806708+


(1)
AGO1.ip
(1)
AGO2.ip
(3)
B-CELL
(7)
BREAST
(9)
CELL-LINE
(1)
HELA
(1)
LIVER
(4)
OTHER
(1)
SKIN

Sense strand
GGCTGACCACCAACGAAGAGTACACCGGGCGGTGGGAGAGGGGCATCCAGGTACGCCCGGGCGGGGTAGCAGCTTATACCCAGAGGCGGATGCTCCGCCGATTCTCAACACATGTATATTTCTTTTTGGGTTTTGTTTTTGTTTTTGTTTTGAGACAGAGTCTCTCTCTGTCTGTCTCCCAGGCTGGAGTGCACTGGCGCAATCTTGGCTCACTGCAGCCTCCACCTCCCGGGTTCAAGCAATTCTCCTG
........................................................................................................................................................((((((((.....)))))))).....((((((......)).)))).....................................................
.........................................................................................................................122...........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189787TAX577740(Rovira)
total RNA. (breast)
SRR189785TAX577589(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
TAX577745(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR189784SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
.............................................................................................................................................................................................................TGGCTCACTGCAGCCTCCACCTCCGGGC.................283.000.00-3.00------------------------
..............................................................................................................................TGGGTTTTGTTTTTGTTTTCTGC.....................................................................................................233.000.003.00-------------------------
..............................................................................................................................TGGGTTTTGTTTTTGTTTTTGTTTGAC.................................................................................................272.000.002.00-------------------------
...........................................................................................................................TTTTGGGTTTTGTTTTTGTTTTTTCGC....................................................................................................272.000.002.00-------------------------
..........................................................................................................................TTTTTGGGTTTTGTTTTTGTTTTACTG.....................................................................................................272.000.001.00-1.00-----------------------
..................................................................................................................................TTTTGTTTTTGTTTTTGTTCCAG.................................................................................................232.000.001.00-1.00-----------------------
.................................................................................................................................................................CTCTCTCTGTCTGTCTCCGTC....................................................................212.000.00------2.00-------------------
.............................................................................................................................TTGGGTTTTGTTTTTGTTTTTGTCTT...................................................................................................261.000.00-1.00------------------------
.................................................................................................................................GTTTTGTTTTTGTTTTTGTCTCC..................................................................................................231.000.00-1.00------------------------
.................................................................................................................................................................................CCCAGGCTGGAGTGCACTGGCGCAATCCCA...........................................301.000.001.00-------------------------
....................................................................................................................................................................TCTCTGTCTGTCTCCCAGGCTGGAGTGCGTG.......................................................311.000.00-1.00------------------------
.........................................................................................................................................................................................................ATCTTGGCTCACTGCAGCCTCCACCTCCGGGT.................321.000.00-1.00------------------------
..................................................................................................................................TTTTGTTTTTGTTTTTGTTCTCG.................................................................................................231.000.00-1.00------------------------
.........................................................................................................................................................................................................ATCTTGGCTCACTGCAGCCTCCACCTGGGT...................301.000.00-1.00------------------------
.............................................................................................................................TTGGGTTTTGTTTTTGTTTTTGCC.....................................................................................................241.000.001.00-------------------------
..............................................................................................................................TGGGTTTTGTTTTTGTTTGCG.......................................................................................................211.000.00-1.00------------------------
.........................................................................................................................................................................................................ATCTTGGCTCACTGCAGCCTCCACCTCGGAT..................311.000.00-1.00------------------------
..............................................................................................................................................................................TCTCCCAGGCTGGAGTGCACGGC.....................................................231.000.001.00-------------------------
............................................................................................................................TTTGGGTTTTGTTTTTGTTTCATT......................................................................................................241.000.001.00-------------------------
.................................................................................................................................GTTTTGTTTTTGTTTTTGTGTAC..................................................................................................231.000.00--1.00-----------------------
...................................................................................................................................................................................................................ACTGCAGCCTCCACCTCCCGGGTCGTG............271.000.00-1.00------------------------
..............................................................................................................................TGGGTTTTGTTTTTGTTTTTGTTTTCGC................................................................................................281.000.001.00-------------------------
.........................................................................................................................................................................................................ATCTTGGCTCACTGCAGCCTCCACCTCCGGGC.................321.000.00-1.00------------------------
................................................................................................................................................TTGTTTTGAGACAGAGTCTCTCTCCGTC..............................................................................281.000.001.00-------------------------
.........................................................................................................................................................................................................ATCTTGGCTCACTGCAGCCTCCACCCAGG....................291.000.00-1.00------------------------
..................................................................................................................................TTTTGTTTTTGTTTTTGTTCGG..................................................................................................221.000.00-1.00------------------------
................................................................................................................................GGTTTTGTTTTTGTTTTTCGCT....................................................................................................221.000.00-1.00------------------------
..............................................................................................................................................................................TCTCCCAGGCTGGAGTGCACGGTG....................................................241.000.001.00-------------------------
...........................................................................................................................TTTTGGGTTTTGTTTTTGTTTTATC......................................................................................................251.000.001.00-------------------------
...........................................................................................................................TTTTGGGTTTTGTTTTTGTTTTTCA......................................................................................................251.000.00-1.00------------------------
.........................................................................................................................................................................................................ATCTTGGCTCACTGCAGCCTCCACCTAGAG...................301.000.00-1.00------------------------
............................GCGGTGGGAGAGGGGCGGG...........................................................................................................................................................................................................191.000.00---------------------1.00----
.................................................................................................................................GTTTTGTTTTTGTTTTTGTTTCACC................................................................................................251.000.00-1.00------------------------
..........................................................................................................................TTTTTGGGTTTTGTTTTTGTTTCATT......................................................................................................261.000.00-1.00------------------------
.............................................................................................................................TTGGGTTTTGTTTTTGTTTGC........................................................................................................211.000.00-1.00------------------------
..............................................................................................................................TGGGTTTTGTTTTTGTTTTCGAG.....................................................................................................231.000.001.00-------------------------
..................................................................................................................................TTTTGTTTTTGTTTTTGTTCGAG.................................................................................................231.000.001.00-------------------------
..........................................................................................................................TTTTTGGGTTTTGTTTCGTT............................................................................................................201.000.00-1.00------------------------
...............................................................................................................................GGGTTTTGTTTTTGTTTTTGTTTTCAGG...............................................................................................281.000.00-1.00------------------------
.............................................................................ACCCAGAGGCGGATGTA............................................................................................................................................................171.000.00----------------1.00---------
............................................................................................................................TTTGGGTTTTGTTTTTGTTTTTCGC.....................................................................................................251.000.00-1.00------------------------
..........................................................................................................................TTTTTGGGTTTTGTTTTTGTTTTATC......................................................................................................261.000.00-1.00------------------------
.............................................................................ACCCAGAGGCGGATGGT............................................................................................................................................................171.000.00----------------------1.00---
................................................................................................................................GGTTTTGTTTTTGTTTTTGTTTTCAGG...............................................................................................271.000.00-1.00------------------------
..............................................................................................................................................................................TCTCCCAGGCTGGAGTGCACGGCG....................................................241.000.00-1.00------------------------
...........................................................................................................................TTTTGGGTTTTGTTTTTGTTTTTGTTTCT..................................................................................................291.000.00-1.00------------------------
................................................................................................................................................................................................................CTCACTGCAGCCTCCACCTCCCGGGAC...............271.000.001.00-------------------------
.............................................................................................................................TTGGGTTTTGTTTTTGTTTTTGTCTTT..................................................................................................271.000.001.00-------------------------
................................TGGGAGAGGGGCATCCAGAAC.....................................................................................................................................................................................................211.000.00---------1.00----------------
...........................................................................................................................TTTTGGGTTTTGTTTTTGTTCC.........................................................................................................221.000.001.00-------------------------
..............................................................................................................................TGGGTTTTGTTTTTGTTTTTGTTTTCGAG...............................................................................................291.000.00-1.00------------------------
............................................................................................................................................................................TGTCTCCCAGGCTGGAGTGCACTGGCAGG.................................................291.000.00-1.00------------------------
................................................................................................................................GGTTTTGTTTTTGTTTTTGTTTTCTCC...............................................................................................271.000.00-1.00------------------------
............................................................................................................................TTTGGGTTTTGTTTTTGTTTTCTGC.....................................................................................................251.000.001.00-------------------------
.............................................................................................................................TTGGGTTTTGTTTTTGTTTTTGTTTTCTTG...............................................................................................301.000.001.00-------------------------
................................................................................................................................GGTTTTGTTTTTGTTTTTGTTTCC..................................................................................................241.000.00-1.00------------------------
...............................................................................................................................GGGTTTTGTTTTTGTTTTTGTTTCAC.................................................................................................261.000.001.00-------------------------
.............................................................................................................................................................................................................TGGCTCACTGCAGCCTCCACCCAGC....................251.000.00-1.00------------------------
...............................................................................................................................................................................CTCCCAGGCTGGAGTGCACCGGC....................................................231.000.001.00-------------------------
....................................................................................................................................................................................AGGCTGGAGTGCACTGCGCG..................................................201.000.00-1.00------------------------
..............................................................................................................................TGGGTTTTGTTTTTGTTTTTTTTA....................................................................................................241.000.00-1.00------------------------
.............................................................................................................................TTGGGTTTTGTTTTTGTTTTTGTTTCC..................................................................................................271.000.00-1.00------------------------
................................................................................................................................GGTTTTGTTTTTGTTTTTCGC.....................................................................................................211.000.00-1.00------------------------
...........................................................................................................................TTTTGGGTTTTGTTTTTGTTTTTGTTCTTT.................................................................................................301.000.00-1.00------------------------
............................................................................................................................................................................TGTCTCCCAGGCTGGAGTGCACGGAT....................................................261.000.001.00-------------------------
.............................................................................................................................TTGGGTTTTGTTTTTGTTCTTG.......................................................................................................221.000.001.00-------------------------
.........................CGGGCGGTGGGAGAGGGGCA.............................................................................................................................................................................................................2020.500.50-------------------------0.50

Antisense strand
GGCTGACCACCAACGAAGAGTACACCGGGCGGTGGGAGAGGGGCATCCAGGTACGCCCGGGCGGGGTAGCAGCTTATACCCAGAGGCGGATGCTCCGCCGATTCTCAACACATGTATATTTCTTTTTGGGTTTTGTTTTTGTTTTTGTTTTGAGACAGAGTCTCTCTCTGTCTGTCTCCCAGGCTGGAGTGCACTGGCGCAATCTTGGCTCACTGCAGCCTCCACCTCCCGGGTTCAAGCAATTCTCCTG
........................................................................................................................................................((((((((.....)))))))).....((((((......)).)))).....................................................
.........................................................................................................................122...........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189787TAX577740(Rovira)
total RNA. (breast)
SRR189785TAX577589(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
TAX577745(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR189784SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
.......................................................................................................................................................................................................................CAGCCTCCACCTCCCGGGTTCAAGAG......... 263.000.003.00-------------------------
..................................................................................................................................................................................................................CACTGCAGCCTCCACCTCCCGGGTTTT............. 272.000.00--------------1.00--1.00--------
.......................................................................................................................................................................................................................CAGCCTCCACCTCCCGGGTTCAGCG.......... 252.000.001.001.00------------------------
......................................................................................................................................................................................................................GCAGCCTCCACCTCCCGGGTTTGCG........... 252.000.001.001.00------------------------
.......................................................................................................................................................................................................................CAGCCTCCACCTCCCGGGTTCAAGAA......... 261.000.001.00-------------------------
.......................................................................................................................................................................................................................CAGCCTCCACCTCCCGGGTTCAGAC.......... 251.000.001.00-------------------------
........................................................................................................................................................................................................................AGCCTCCACCTCCCGGGTTCAAGCAATTTCGG.. 321.000.001.00-------------------------
.......................................................................................................................................................................................................................CAGCCTCCACCTCCCGGGTTCAAG........... 241.000.001.00-------------------------
............................................................................................................................................................................................................................CAGGAGAATTGCTTGAACCCGGGAGGTGGA 3001.001.00---1.00----------------------
.................................................................................................................................................................................................................TCACTGCAGCCTCCACCTCCCGGGTCCAG............ 291.000.00-1.00------------------------
.......................................................................................................................................................................................................................CAGCCTCCACCTCCCGGGTTCAAAAA......... 261.000.001.00-------------------------
.......................................................................................................................................................................................................................CAGCCTCCACCTCCCGGGTTCAAGGAG........ 271.000.00--1.00-----------------------
......................................AGGGGCATCCAGGTAAC................................................................................................................................................................................................... 171.000.00-----------------------1.00--
..................................................................................................................................................................................................................CACTGCAGCCTCCACCTCCCGGGTCGGC............ 281.000.001.00-------------------------
................................................................GGTAGCAGCTTATACAGG........................................................................................................................................................................ 181.000.00-----------1.00--------------
......................................AGGGGCATCCAGGTAACA.................................................................................................................................................................................................. 181.000.00-------------1.00------------
.............................................................................................................................................................................................................................CCACCTCCCGGGTTCAAGCAATTCGGC.. 271.000.001.00-------------------------
......................................AGGGGCATCCAGGTAGC................................................................................................................................................................................................... 171.000.00--------------------1.00-----
....................................................................................................................................................................................................................................CCGGGTTCAAGCAATTCTCCTTAGC 251.000.00--------1.00-----------------
.................................................................................................................................................................................................................TCACTGCAGCCTCCACCTCCCGGGTTCAACTGG........ 331.000.001.00-------------------------
...........................................................................................................................................................................................................................CTCCACCTCCCGGGTTCAAGCAATTCTCCTCCG 331.000.00-1.00------------------------
................................................................................................................................................................................................................CTCACTGCAGCCTCCACCTCCCGGGTTGAG............ 301.000.001.00-------------------------
.......................................................................................................................................................................................................................CGGGAGGTGGAGGCTG................... 1601.001.00----1.00---------------------
.....................................................................................................................................................................................GGCTGGAGTGCACTGGCGCAATGGGC........................................... 261.000.001.00-------------------------
....................................................................................................................................................................................................................CTGCAGCCTCCACCTCCCGGGTCGGG............ 261.000.001.00-------------------------
....................................................................................................................................................................................................................CTGCAGCCTCCACCTCCCGGGTTGAT............ 261.000.001.00-------------------------
..................................................................................................................................................................................................................CACTGCAGCCTCCACCTCCCGGGTTTGCG........... 291.000.00-1.00------------------------
........................................................................................................................................................................................................................AGCCTCCACCTCCCGGGTTTCGG........... 231.000.001.00-------------------------
....................................................................................................................................................................................................................CTGCAGCCTCCACCTCCCGGGTTCGG............ 261.000.00-------1.00------------------
.......................................................................................................................................................................................................................TTGAACCCGGGAGGTGGAGGCTG............ 2301.001.00-----1.00--------------------
.......................................................................................................................................................................................................................AACCCGGGAGGTGGAGGCTG............... 2001.001.00-----1.00--------------------
.......................................................................................................................................................................................................................CAGCCTCCACCTCCCGGT................. 181.000.00----1.00---------------------
.........................................................................................................................................................................................................................GCCTCCACCTCCCGGGTTCGTC........... 221.000.00------------1.00-------------
....................................................................................................................................................................................................................CTGCAGCCTCCACCTCCCGGGTTCC............. 251.000.001.00-------------------------
.........................................................................................................................................................................................................................GCCTCCACCTCCCGGGTTCAAGCAATCAAG... 301.000.00-1.00------------------------
.....................................................................................................................................................................................................................TGCAGCCTCCACCTCCCGGGTTCAAGCG......... 281.000.001.00-------------------------
...............................................................................................................................................................................................................GCTCACTGCAGCCTCCACCTCCCGC.................. 251.000.00-1.00------------------------
..............................................................................................................................................................................................................................CACCTCCCGGGTTCAAGCAAAAGG.... 241.000.00---1.00----------------------
.........................CGGGCGGTGGGAGAGGTCCG............................................................................................................................................................................................................. 201.000.00---------------1.00----------
.........................................................................................................................................................................GTCTGTCTCCCAGGCTGGCG............................................................. 201.000.00-------------------1.00------
.....................................................................................................................................................................................................................TGCAGCCTCCACCTCCCGGGTTAA............. 241.000.00----------1.00---------------
.......................................................................................................................................................................................................................CAGCCTCCACCTCCCGGGTTCAAGGG......... 261.000.001.00-------------------------
.......................................................................................................................................................................................................................CAGCCTCCACCTCCCGGGTTCAAGCAATGAG.... 311.000.001.00-------------------------
................................................................................................................................................................................................................CTCACTGCAGCCTCCACCTCCCGGGTTATC............ 301.000.001.00-------------------------
....................................................................................................................................................................................................................CTGCAGCCTCCACCTCCCGGGTTCGTT........... 271.000.00-------1.00------------------
.........................................................................................................................................................................................................................GCCTCCACCTCCCGGGAAAA............. 201.000.00------------------1.00-------
...............................................GCCCGGGCGTACCTG............................................................................................................................................................................................ 1520.500.50------------------------0.50-