ID: uc003squ.2_intron_7_0_chr7_6775021_f.5p
GENE: (8)
chr7:6774971-6775220+


(1)
AGO2.ip
(3)
B-CELL
(8)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(1)
LIVER
(1)
OTHER
(4)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TAATCGACACCAGTATCCATTTGTTGTTCTTAACATTTCTGTTGATTCAGGTAAGTTCCATTGGCATTTCAGTACAACTAGTGACTAATGCCTCAAAGAATAAAATGAAATTCTACAACTCTGCTATGACTGGAATGAGATAACAATTTATGGTCATGTAAGTTTTTTTTTTTCTTTTTGAGACGGGGTCTTGCTCAGGGTTTCACCGTCCACGCCCTGTAATCCCAGCATTTTGGGAGGCTGAGGTGAA
.............................................................................................................................................................(((((...(((..((((.....))))..))).)))))........................................................
.........................................................................................................................................................154...........................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189786SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................................................................ACGGGGTCTTGCTCAAT...................................................178.000.00--8.00--------------------
..............................................................................................................................................................TAAGTTTTTTTTTTTCTTTTGGGT....................................................................247.000.004.003.00---------------------
..............................................................................................................................................................TAAGTTTTTTTTTTTCTTTTTGGG....................................................................246.000.003.003.00---------------------
..............................................................................................................................................................TAAGTTTTTTTTTTTCTTTTTGGGT...................................................................255.000.002.003.00---------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTGGGTT..................................................................245.000.002.003.00---------------------
.....................................................................................................................................................................................GACGGGGTCTTGCTCAAT...................................................184.000.00--4.00--------------------
..............................................................................................................................................................TAAGTTTTTTTTTTTCTTTTTTGGG...................................................................254.000.004.00----------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTGGGT...................................................................234.000.001.003.00---------------------
..............................................................................................................................................................TAAGTTTTTTTTTTTCTTTTGGG.....................................................................234.000.00-3.00-1.00-------------------
..................................................................................................................................................................................................................................AGCATTTTGGGAGGCTGTGGA...213.000.00----3.00------------------
..............................................................................................................................................................TAAGTTTTTTTTTTTCTTTGGG......................................................................223.000.001.002.00---------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTTGGG...................................................................233.000.003.00----------------------
..............................................................................................................................................................TAAGTTTTTTTTTTTCTTTTTGGGTT..................................................................262.000.001.001.00---------------------
..............................................................................................................................................................TAAGTTTTTTTTTTTCTTTGGGT.....................................................................232.000.00-2.00---------------------
...................................................................................................................................................................TTTTTTTTTTCTTTTTGAGACGGTCG.............................................................262.000.00-2.00---------------------
...............................................................................................................................................................AAGTTTTTTTTTTTCTTGGGT......................................................................212.000.00-1.00-1.00-------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTGGG....................................................................222.000.001.00--1.00-------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTGAGACGG................................................................2622.002.000.501.50---------------------
...............................................................................................................................................................AAGTTTTTTTTTTTCTTTGGCC.....................................................................222.000.00-2.00---------------------
.....................................................................................................................................................................................GACGGGGTCTTGCTCAA....................................................172.000.00--2.00--------------------
...............................................................................................................................................................AAGTTTTTTTTTTTCTTTTTGGGTT..................................................................252.000.002.00----------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTGATT...................................................................231.000.001.00----------------------
..........................................................................................................................................................................TTTCTTTTTGAGACGGGGGCTC..........................................................221.000.00-1.00---------------------
...............................................................................................................................................................AAGTTTTTTTTTTTCTTCATC......................................................................211.000.00-1.00---------------------
..................................................................................................................................................................TTTTTTTTTTTCTTTTTGAGAGGAG...............................................................251.000.00-1.00---------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTAAC....................................................................221.000.001.00----------------------
......................................................................................................................................................................TTTTTTTCTTTTTGAGACGGGGTTTCG.........................................................271.000.001.00----------------------
.....................................................................................................................................................................TTTTTTTTCTTTTTGAGACGGGTTT............................................................251.000.001.00----------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTGCAGG..................................................................241.000.001.00----------------------
..........................................................................................................................................................................TTTCTTTTTGAGACGGGGCCTC..........................................................221.000.001.00----------------------
...............................................................................................................................................................AAGTTTTTTTTTTTCTTTTTGGGCT..................................................................251.000.001.00----------------------
.................................................................................................................................................................................TTGAGACGGGGTCTTGCACCG....................................................211.000.001.00----------------------
....................................................................................................................................................................TTTTTTTTTCTTTTTGAGACGGGGG.............................................................251.000.00-1.00---------------------
..................................................................................................................................................................TTTTTTTTTTTCTTTTTGATCAG.................................................................231.000.00-1.00---------------------
.................................................................................................................................................................GTTTTTTTTTTTCTTTTTGAGAGG.................................................................241.000.00-1.00---------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTGGGTC..................................................................241.000.00-1.00---------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTGAGG.....................................................................211.000.001.00----------------------
..................................................................................................................................................................TTTTTTTTTTTCTTTTTGAGTTGT................................................................241.000.00-1.00---------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTGGGAG..................................................................241.000.00-1.00---------------------
.....................................................................................................................................................................TTTTTTTTCTTTTTGAGACGGGAAC............................................................251.000.001.00----------------------
...............................................................................................................................................................AAGTTTTTTTTTTTCTTTTGGG.....................................................................221.000.00-1.00---------------------
...............................................................................................................................................................AAGTTTTTTTTTTTCTTTTGGGT....................................................................231.000.00-1.00---------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTTGGC...................................................................231.000.001.00----------------------
.............................................................................................................................................................................CTTTTTGAGACGGGGTATA..........................................................191.000.00-----1.00-----------------
...............................................................................................................................................................AAGTTTTTTTTTTTCTTTTTGGTCT..................................................................251.000.001.00----------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTGGCTT..................................................................241.000.001.00----------------------
.......................................................................................................................................................................TTTTTTCTTTTTGAGACGGGCC.............................................................221.000.00-1.00---------------------
......................................................................................................................................................................................ACGGGGTCTTGCTCAATT..................................................181.000.00--1.00--------------------
....................................................................................................................................................................TTTTTTTTTCTTTTTGAGACGGGGTTTGA.........................................................291.000.001.00----------------------
...........................................................................................................................................................................TTCTTTTTGAGACGGGGGC............................................................191.000.001.00----------------------
..............................................................................................................................................................TAAGTTTTTTTTTTTCTTGGG.......................................................................211.000.001.00----------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTGAC......................................................................201.000.001.00----------------------
...............................................................................................................................................................AAGTTTTTTTTTTTCTTTTTGAGGC..................................................................251.000.001.00----------------------
...............................................................................................................................................................AAGTTTTTTTTTTTCTTTTTGTGGC..................................................................251.000.001.00----------------------
.................................................................................................................................................................................TTGAGACGGGGTCTTGCTCAGCT..................................................231.000.00-----------1.00-----------
...................................................................................................................................................................TTTTTTTTTTCTTTTTGAGACGGGGCC............................................................271.000.00-1.00---------------------
....................................................................................................................................................................TTTTTTTTTCTTTTTGAGACGGGGA.............................................................251.000.00-1.00---------------------
...............................................................................................................................................................AAGTTTTTTTTTTTCTTTTTTAAC...................................................................241.000.001.00----------------------
..........................................................CATTGGCATTTCAGTTTG..............................................................................................................................................................................181.000.00----------1.00------------
...............................................................................................................................................................AAGTTTTTTTTTTTCTTTTAAGC....................................................................231.000.001.00----------------------
..........................................................................................................................................................................TTTCTTTTTGAGACGGGGTCTTGATA......................................................261.000.00-1.00---------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTTGAA...................................................................231.000.00-1.00---------------------
...............................................................................................................................................................AAGTTTTTTTTTTTCTTTAGC......................................................................211.000.001.00----------------------
....................................................................................................................................................................TTTTTTTTTCTTTTTGAGACGGGCC.............................................................251.000.00-1.00---------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTAAGC...................................................................231.000.001.00----------------------
...................................................................................................................................................................TTTTTTTTTTCTTTTTGAGACGGGGTTTTG.........................................................301.000.00-1.00---------------------
..............................................................................................................................................................................TTTTTGAGACGGGGTCTTGCCCTT....................................................241.000.00---1.00-------------------
......................................................................................................................................................................TTTTTTTCTTTTTGAGACGTC...............................................................211.000.001.00----------------------
......................................................................................................................................................................................ACGGGGTCTTGCTCATA...................................................171.000.00--1.00--------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTGGGT.....................................................................211.000.001.00----------------------
.............................................................................................................................ATGACTGGAATGAGATAACA.........................................................................................................2021.001.00------1.00----------------
......................................................................................................................................................................................................................CCCTGTAATCCCAGCATTTAA...............211.000.00--------1.00--------------
.......................................................................................................................................................................TTTTTTCTTTTTGAGACGGTGAC............................................................231.000.00-1.00---------------------
..............................................................................................................................................................TAAGTTTTTTTTTTTCTTTTTGGGGT..................................................................261.000.001.00----------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTGGCTG..................................................................241.000.00-1.00---------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTTGCC...................................................................231.000.001.00----------------------
......................................................................................................................................................................................ACGGGGTCTTGCTCAATA..................................................181.000.00--1.00--------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTGGTG...................................................................231.000.00-1.00---------------------
...............................................................................................................................................................AAGTTTTTTTTTTTCTTTTTTGGG...................................................................241.000.001.00----------------------
......................................................................................................................................................................TTTTTTTCTTTTTGAGACGGGGCC............................................................241.000.001.00----------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTCG........................................................................181.000.00----------------1.00------
...................................................................................................................................................................TTTTTTTTTTCTTTTTGAGAGGAG...............................................................241.000.00-1.00---------------------
...............................................................................................................................................................AAGTTTTTTTTTTTCTTTTTTGCC...................................................................241.000.001.00----------------------
.................................................................................................................................................................GTTTTTTTTTTTCTTTTTGTTAT..................................................................231.000.00-1.00---------------------
...............................................................................................................................................................................TTTTGAGACGGGGTCTTGAAAA.....................................................221.000.00-------1.00---------------
..........................................................................CAACTAGTGACTAATGCCT.............................................................................................................................................................1920.500.50-----0.50-----------------
...............................................................................................................................................CAATTTATGGTCATGTAA.........................................................................................1820.500.50-----------------0.50-----
........................TGTTCTTAACATTTCTGTTGATTCA.........................................................................................................................................................................................................2520.500.50------------------0.50----
.................................................................................................................................CTGGAATGAGATAACAATTTAT...................................................................................................2220.500.50--------------------0.50--
..........................................................................................................................................................................TTTCTTTTTGAGACGGGGTCTTGCT.......................................................2540.500.500.250.25---------------------
..................................................GTAAGTTCCATTGGCATTTCAGTACA..............................................................................................................................................................................2620.500.50-------------------0.50---
...............................................................................AGTGACTAATGCCTCAAAGAATAAAAT................................................................................................................................................2720.500.50-----0.50-----------------
..................................................................................................................................................................TTTTTTTTTTTCTTTTTGAGACGGGG..............................................................2670.430.430.290.14---------------------
...............................AACATTTCTGTTGATTCAG........................................................................................................................................................................................................1970.290.29------0.29----------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTGAGACAGGG..............................................................2840.250.250.25----------------------
................................................................................................................................................................AGTTTTTTTTTTTCTTTTTGAGAC..................................................................2440.250.250.25----------------------
.................................................................................................................................................................GTTTTTTTTTTTCTTTTTGAGACGG................................................................2560.170.170.17----------------------
..................................................................................................................................................................TTTTTTTTTTTCTTTTTGAGACGGGGTC............................................................2860.170.170.17----------------------
......................................................................................................................................................................................ACGGGGTCTTGCTCAG....................................................1680.120.12--0.12--------------------

Antisense strand
TAATCGACACCAGTATCCATTTGTTGTTCTTAACATTTCTGTTGATTCAGGTAAGTTCCATTGGCATTTCAGTACAACTAGTGACTAATGCCTCAAAGAATAAAATGAAATTCTACAACTCTGCTATGACTGGAATGAGATAACAATTTATGGTCATGTAAGTTTTTTTTTTTCTTTTTGAGACGGGGTCTTGCTCAGGGTTTCACCGTCCACGCCCTGTAATCCCAGCATTTTGGGAGGCTGAGGTGAA
.............................................................................................................................................................(((((...(((..((((.....))))..))).)))))........................................................
.........................................................................................................................................................154...........................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189786SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................AAGAATAAAATGAAATGCC........................................................................................................................................ 191.000.001.00----------------------
...................................................................................................................................................................................GAGACGGGGTCTTGCTCTA.................................................... 191.000.00---------1.00-------------
..............................................................................................AAAGAATAAAATGAAATACTG....................................................................................................................................... 211.000.00--------------1.00--------
....................................................................................................................................................................................................................CGCCCTGTAATCCCAGCAAGGC................ 221.000.00-1.00---------------------
.................................................................................................................................................................GTTTTTTTTTTTCTTTGATG..................................................................... 201.000.00-------------1.00---------
...........................................................................................CTCAAAGAATAAAATACGG............................................................................................................................................ 191.000.001.00----------------------
...........................................................................................CTCAAAGAATAAAATCG.............................................................................................................................................. 171.000.001.00----------------------
...........................................................................................CTCAAAGAATAAAATAAGG............................................................................................................................................ 191.000.00-1.00---------------------
...........................................................................................CTCAAAGAATAAAATGAAAACGG........................................................................................................................................ 231.000.00-1.00---------------------
..........................................................................................................................................................................................................TGGGATTACAGGGCGTGGACGGTGA....................... 2511.001.00------------1.00----------
.................................................................................................GAATAAAATGAAATTAATA...................................................................................................................................... 191.000.00---------------1.00-------
....................................................................................................................................................................................................................AATGCTGGGATTACAGGGCG.................. 2040.500.50-0.50---------------------
....................................................................................................................................................................................................................CCCAAAATGCTGGGATTACAGGGCG............. 2540.250.25---------------------0.25-
....................................................................................................................................................................................................................CGCCCTGTAATCCCAGCATTAG................ 220.250.00-0.25---------------------
.....................................TACCTGAATCAACAGA..................................................................................................................................................................................................... 1660.170.17----------------------0.17