ID: uc003sph.1_intron_16_0_chr7_6004202_r.3p
GENE: RSPH10B(4)
chr7:6004152-6004401-


(2)
AGO2.ip
(1)
BRAIN
(1)
BREAST
(14)
CELL-LINE
(2)
CERVIX
(4)
HEART
(1)
HELA
(3)
LIVER
(1)
OTHER
(16)
SKIN
(1)
XRN.ip

Sense strand
ATGGTGGTGGATGCCTGTAGTCCCAGCTACTCGGGAGGCTGAAGTGGGAGGATTGCTTGAGCCTGGGAGTTCGAGGCTGCAGTGAGCTATGATCACACCACTGCACTCCAGCCTGGGTGACAGAACCAGACCCTATCTCAAATATGTATATGTGTCAGCTGTATTCTAAGTGTTTGTCGTTGCTTTGTTTTGTTTTGAAGGGTATGTTTTCAGAAGGACTCATGCATGGACAGGGGACTTATATTTGGGC
....................................................................................................((((((.((.....))))).)))...((.(((((....((((((((((((.((....))))))).....)))))))(((..((........))..)))))))).))............................................
....................................................................................................101......................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.........................................................................................................CTCCAGCCTGGGTGACAGAACTCTG........................................................................................................................2515.000.00--2.00-2.002.00-1.00--2.00---1.00---1.00-1.001.00-1.00----------1.00---------
........................................................................................................ACTCCAGCCTGGGTGACAGAACTCTG........................................................................................................................268.000.00--2.00-1.00-------2.00---1.00----------------------1.00--1.00-
.......................................................................................................CACTCCAGCCTGGGTGACAGAACTCTG........................................................................................................................273.000.00--------1.00-----1.00----------1.00------------------
...........................................................................................ATCACACCACTGCACTCCAGCCGAGC.....................................................................................................................................263.000.002.001.00------------------------------------------
..............................................................................................ACACCACTGCACTCCAGCCGGCG.....................................................................................................................................232.000.00-2.00------------------------------------------
........................................................................................ATGATCACACCACTGCACTCCAGCCACTG.....................................................................................................................................292.000.002.00-------------------------------------------
..................................................................GAGTTCGAGGCTGCAGTGAGCTTATA..............................................................................................................................................................262.000.00-----------2.00--------------------------------
...............................................................TGGGAGTTCGAGGCTGCAGTGAGCTACG...............................................................................................................................................................282.000.00-2.00------------------------------------------
.........GATGCCTGTAGTCCCAGC...............................................................................................................................................................................................................................1801.001.00------------------------1.00-------------------
..........................................AGTGGGAGGATTGCTTTAAA............................................................................................................................................................................................201.000.00----------------------1.00---------------------
.....................CCCAGCTACTCGGGAGGCTGAAG..............................................................................................................................................................................................................2301.001.00---1.00----------------------------------------
...................................................................................................................................................................................TTGCTTTGTTTTGTTTTGATTCT................................................231.000.001.00-------------------------------------------
...........................................................................................ATCACACCACTGCACTCCAGCCGACG.....................................................................................................................................261.000.001.00-------------------------------------------
.....................................................................TTCGAGGCTGCAGTGAGCTATGATCCGCC........................................................................................................................................................291.000.001.00-------------------------------------------
...................................AGGCTGAAGTGGGAGGATTGCTGAG..............................................................................................................................................................................................251.000.00---------------1.00----------------------------
.........................................................................AGGCTGCAGTGAGCTATGAATAG..........................................................................................................................................................231.000.00----------------------------1.00---------------
...........................................................................................ATCACACCACTGCACTCCAGCCGGCG.....................................................................................................................................261.000.00-1.00------------------------------------------
.........................................AAGTGGGAGGATTGCTTGAGCCTGGGAGCAGG.................................................................................................................................................................................321.000.001.00-------------------------------------------
...................................AGGCTGAAGTGGGAGGTTTT...................................................................................................................................................................................................201.000.00--------------------------1.00-----------------
..................................................................................TGAGCTATGATCACACCACTGC..................................................................................................................................................2201.001.00------1.00-------------------------------------
........................AGCTACTCGGGAGGCTGAAGTTTG..........................................................................................................................................................................................................241.000.001.00-------------------------------------------
.........................................AAGTGGGAGGATTGCTTGAGCCTGGGAGGAGG.................................................................................................................................................................................321.000.001.00-------------------------------------------
..............CTGTAGTCCCAGCTACTCGGC.......................................................................................................................................................................................................................211.000.00---------1.00----------------------------------
.......................................TGAAGTGGGAGGATTGCTTGAGCCGC.........................................................................................................................................................................................261.000.00-1.00------------------------------------------
...................................................................AGTTCGAGGCTGCAGTGAGCAGCG...............................................................................................................................................................241.000.00---------------1.00----------------------------
................................................................................................................................................................................................................TTCAGAAGGACTCATGCATGGACAGG................2621.001.00-------------------------------1.00------------
..........ATGCCTGTAGTCCCAGCTACTCGGTC......................................................................................................................................................................................................................261.000.001.00-------------------------------------------
...............TGTAGTCCCAGCTACTCGGGCGGC...................................................................................................................................................................................................................241.000.00------1.00-------------------------------------
......................................................................TCGAGGCTGCAGTGAGCTATGATGGGA.........................................................................................................................................................271.000.00-----------------------------------1.00--------
......................................................................................................GCACTCCAGCCTGGGTGACAGAACTCTG........................................................................................................................281.000.00--------1.00-----------------------------------
........................................................................................ATGATCACACCACTGCACTCCAGCCGGGC.....................................................................................................................................291.000.001.00-------------------------------------------
.......................................................................CGAGGCTGCAGTGAGCGAGG...............................................................................................................................................................201.000.001.00-------------------------------------------
................GTAGTCCCAGCTACTCGGGCCG....................................................................................................................................................................................................................221.000.00---------------------------1.00----------------
.........................................................TGAGCCTGGGAGTTCGAGGCTGCAGTGACCT..................................................................................................................................................................311.000.001.00-------------------------------------------
...........................................................AGCCTGGGAGTTCGAGGCTGCAGTGAGCGG.................................................................................................................................................................301.000.001.00-------------------------------------------
.....................CCCAGCTACTCGGGAGGCTGAA...............................................................................................................................................................................................................2201.001.00-------------1.00------------------------------
.............................................................................................CACACCACTGCACTCCAGCCGAGC.....................................................................................................................................241.000.001.00-------------------------------------------
...........TGCCTGTAGTCCCAGCTACTCGGGAGCGC..................................................................................................................................................................................................................291.000.00-------------------------------------1.00------
..........................................AGTGGGAGGATTGCTTGAGCCTGGGAGCCC..................................................................................................................................................................................301.000.001.00-------------------------------------------
.........................................AAGTGGGAGGATTGCTTGCGCC...........................................................................................................................................................................................221.000.001.00-------------------------------------------
.........................................AAGTGGGAGGATTGCTTGAGCCTGGGAGCCC..................................................................................................................................................................................311.000.00-1.00------------------------------------------
..................................................................GAGTTCGAGGCTGCAGTGAGCGTGG...............................................................................................................................................................251.000.001.00-------------------------------------------
.....................................................................TTCGAGGCTGCAGTGAGCAGCG...............................................................................................................................................................221.000.001.00-------------------------------------------
....................................................................................AGCTATGATCACACCACTGCACTCCAG...........................................................................................................................................2701.001.00---------1.00----------------------------------
.................................................................GGAGTTCGAGGCTGCAGTGGGCA..................................................................................................................................................................231.000.00------------------------------------1.00-------
..............................................................................................ACACCACTGCACTCCAGCCGGCC.....................................................................................................................................231.000.00-1.00------------------------------------------
.................................GGAGGCTGAAGTGGGAGGAGCAT..................................................................................................................................................................................................231.000.00-----------------------------1.00--------------
.........................................................................................................CTCCAGCCTGGGTGACAGAACTCAG........................................................................................................................251.000.00-------1.00------------------------------------
.........................................AAGTGGGAGGATTGCTTGAGCCGGAC.......................................................................................................................................................................................261.000.00-1.00------------------------------------------
....................TCCCAGCTACTCGGGAGGCTGAA...............................................................................................................................................................................................................2301.001.00-----------------------------------------1.00--
...................................................................AGTTCGAGGCTGCAGTGAGCTATGA..............................................................................................................................................................2501.001.00------------------------------1.00-------------
......................................................................................................................................................................................................................AGGACTCATGCATGGACAGGGGAC............2420.500.500.50-------------------------------------------
.......................................................................................................................................................................................TTTGTTTTGTTTTGAAGGG................................................1930.330.33-0.33------------------------------------------

Antisense strand
ATGGTGGTGGATGCCTGTAGTCCCAGCTACTCGGGAGGCTGAAGTGGGAGGATTGCTTGAGCCTGGGAGTTCGAGGCTGCAGTGAGCTATGATCACACCACTGCACTCCAGCCTGGGTGACAGAACCAGACCCTATCTCAAATATGTATATGTGTCAGCTGTATTCTAAGTGTTTGTCGTTGCTTTGTTTTGTTTTGAAGGGTATGTTTTCAGAAGGACTCATGCATGGACAGGGGACTTATATTTGGGC
....................................................................................................((((((.((.....))))).)))...((.(((((....((((((((((((.((....))))))).....)))))))(((..((........))..)))))))).))............................................
....................................................................................................101......................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
..........................................................................GGCTGCAGTGAGCTATGATGACC......................................................................................................................................................... 233.000.00-3.00------------------------------------------
..GGTGGTGGATGCCTGTAGTCCCAGCTGCG........................................................................................................................................................................................................................... 292.000.00-2.00------------------------------------------
.........GATGCCTGTAGTCCCAGCTAAG........................................................................................................................................................................................................................... 221.000.001.00-------------------------------------------
............................................................................................................................................................................TTTGTCGTTGCTTTGGCAG........................................................... 191.000.00---------------------------------1.00----------
....TGGTGGATGCCTGTAGTCCCTA................................................................................................................................................................................................................................ 221.000.00-------------------------------------------1.00
..............................................................................................................TGGTTCTGTCACCCAGGC.......................................................................................................................... 1801.001.00---1.00----------------------------------------
............................ACTCGGGAGGCTGAAGTGGGAGGG...................................................................................................................................................................................................... 241.000.00--------------------------------------1.00-----
......................................................GCTTGAGCCTGGGAGTTCGA................................................................................................................................................................................ 201.000.00---1.00----------------------------------------
....................................................................GTTCGAGGCTGCAGTGAGCTATCTCC............................................................................................................................................................ 261.000.00-1.00------------------------------------------
....................................................................GTTCGAGGCTGCAGTGAGCTACG............................................................................................................................................................... 231.000.001.00-------------------------------------------
................................................................GGGAGTTCGAGGCTGCAGTGAGCTGCG............................................................................................................................................................... 271.000.001.00-------------------------------------------
...............................................................................................................................AGACCCTATCTCAAATTGAT....................................................................................................... 201.000.00----------------------------------------1.00---
.................................................................GGAGTTCGAGGCTGCAGTGAGCTAGGGT............................................................................................................................................................. 281.000.00-1.00------------------------------------------
.............................................................CCTGGGAGTTCGAGGCTGCAGTGAGCTG................................................................................................................................................................. 281.000.00-1.00------------------------------------------
..........................................................................................................TCCAGCCTGGGTGACAGAACCGC......................................................................................................................... 231.000.00-1.00------------------------------------------
.........GATGCCTGTAGTCCCATG............................................................................................................................................................................................................................... 181.000.00-----------------1.00--------------------------
..........................ACTTCAGCCTCCCGAGTAG............................................................................................................................................................................................................. 1901.001.00-------------1.00------------------------------
.........................................................................AGGCTGCAGTGAGCTATGATCACAG........................................................................................................................................................ 251.000.00--------------------------------1.00-----------
..........................................................................................................TCCAGCCTGGGTGACAGAACCACGG....................................................................................................................... 251.000.00-1.00------------------------------------------
....TGGTGGATGCCTGTAGTCCCAGCTACTAC......................................................................................................................................................................................................................... 291.000.00-1.00------------------------------------------