ID: uc003soi.3_intron_6_0_chr7_5360058_r
GENE: (23)
chr7:5360008-5360212-


(2)
AGO2.ip
(1)
B-CELL
(9)
BREAST
(9)
CELL-LINE
(1)
CERVIX
(3)
FIBROBLAST
(4)
HEART
(2)
HELA
(3)
LIVER
(1)
OTHER
(19)
SKIN
(1)
XRN.ip

Sense strand
GGGGCAACCGGCCCCACATCTACTGTCTGGAGCAGTTGCTGCAGGAGGCGGTGAGGGGGGAGGGGCGGGGCCTCGGGAGGCTCGGGGTGGGCTGGGTGTCCAAGGCCATGGCCATAACTGTGTCCACACCTTGCACTCATCCCATGCCCTTCTAGATCATCGATGTGAGGCCAGCCTCCACTCGCTTCTTGCCACAAGGGACCAG
...................................................................((((((....))))))((((((((.((((((..(((((...(((.(((....))).)))..))))))))))).))))).)))........................................................
...................................................................68.....................................................................................155................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784GSM532876(GSM532876)
G547T. (cervix)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
................................................................................CTCGGGGTGGGCTGGGTGTCCAAGGCCATGGCCATAACTGTGTCCACACCTTGCACTCATCCCATGCCCTTAG....................................................738.000.008.00------------------------------------------------------
..................................................................................................................................TTGCACTCATCCCATGCCCTTCT....................................................2317.007.00-1.00-1.00---1.00-------------1.00---------1.00-1.00---------------1.00-----
.............................................................................................................................ACACCTTGCACTCATCCCATG...........................................................2116.006.00-1.00------2.00----------------1.00--1.00-------1.00------------------
..................................................................................................................................TTGCACTCATCCCATGCCCTTC.....................................................2215.005.00------------------1.00-------------------1.00-1.00---1.001.00---------
.............................................................................................................................ACACCTTGCACTCATCCCATGC..........................................................2214.004.00-1.00------------------1.00---1.00---------1.00--------------------
.............................................................................................................................ACACCTTGCACTCATCCCAT............................................................2013.003.00-3.00-----------------------------------------------------
..................................................................................................................................TTGCACTCATCCCATGCCCTT......................................................2113.003.00------1.00----------------1.00----------------------1.00--------
.................................AGTTGCTGCAGGAGGCG...........................................................................................................................................................1713.003.00--2.00--------1.00-------------------------------------------
.............................................................................................................................ACACCTTGCACTCATCCCA.............................................................1912.002.00-1.00----1.00------------------------------------------------
..................................................................................................................................TTGCACTCATCCCATGCCCTTT.....................................................2212.003.00-----1.00---------------------------------1.00---------------
.............................................................................................................................ACACCTTGCACTCATCCCATGCT.........................................................2312.004.00------------1.00-------------1.00----------------------------
.........................TCTGGAGCAGTTGCTGCAGGAGGC............................................................................................................................................................2412.002.00----2.00--------------------------------------------------
.........................TCTGGAGCAGTTGCTGCAGGAGGCG...........................................................................................................................................................2512.002.00-------------------------------------------1.00-------1.00---
.........................TCTGGAGCAGTTGCTGCAGGAGGCGAC.........................................................................................................................................................2711.002.00----------1.00--------------------------------------------
..................................................................................................................................................................ATGTGAGGCCAGCCTCCACTCG.....................2211.001.00--------------------------------------------------1.00----
........................GTCTGGAGCAGTTGCTGCAGGAGGCGAT.........................................................................................................................................................281.000.00----1.00--------------------------------------------------
.............................................................................................................................ACACCTTGCACTCATCCCATT...........................................................2111.003.00-----------------1.00-------------------------------------
.............................................................................................................................ACACCTTGCACTCATCCCATGA..........................................................2211.006.00--------------------------------1.00----------------------
........................................................................................................................TGTCCACACCTTGCAGATC..................................................................191.000.00-------------------1.00-----------------------------------
..................................................................................................................................................CCCTTCTAGATCATCGATGTG......................................2111.001.00---------------1.00---------------------------------------
...................................................................................................................................TGCACTCATCCCATGCCCTTCTAGA.................................................2511.001.00----------------------1.00--------------------------------
.......CCGGCCCCACATCTACT.....................................................................................................................................................................................1711.001.00---1.00---------------------------------------------------
..................................................................................................................................TTGCACTCATCCCATGCCCTTTA....................................................2311.003.00-----------------------------1.00-------------------------
........................................................................TCGGGAGGCTCGGGGTGGTTTT...............................................................................................................221.000.00----------------------------------------------------1.00--
..........................CTGGAGCAGTTGCTGCAGGAGGCG...........................................................................................................................................................2411.001.00------------------------------------------1.00------------
.................................................................................................................................................GCCCTTCTAGATCATGCC..........................................181.000.00---------1.00---------------------------------------------
........................................................................................................................................TCATCCCATGCCCTTCTAG..................................................1911.001.00-----------1.00-------------------------------------------
...................................................................................................................................TGCACTCATCCCATGCCCTTCTAG..................................................2411.001.00-------------------------------------1.00-----------------
..................................................................................................................................TTGCACTCATCCCATGCCCTTTAT...................................................2411.003.00-------1.00-----------------------------------------------
.............................................................................................................................ACACCTTGCACTCATCCCATGT..........................................................2211.006.00--------------1.00----------------------------------------
............................GGAGCAGTTGCTGCAGGAGGCGATCA.......................................................................................................................................................261.000.00------------------------------1.00------------------------
................................................................................CTCGGGGTGGGCTGGGTGTCCAAGGCCATGGCCATAACTGTGTCCACACCTTGCACTCATCCCATGCCCTTCG....................................................731.000.001.00------------------------------------------------------
......................................................................................GTGGGCTGGGTGTCCAAGGCCATG...............................................................................................2411.001.00-----------------------------------------------1.00-------
..................................................................................................................................TTGCACTCATCCCATGCCCTTCTAG..................................................2511.001.00-----1.00-------------------------------------------------
...................................................................................................................................................................TGTGAGGCCAGCCTCCAC........................1811.001.00-----------------------------------1.00-------------------
.............................................................................................................................ACACCTTGCACTCATCCCATGCA.........................................................2311.004.00---------------------------1.00---------------------------
.......................TGTCTGGAGCAGTTGCTGCAGGAGGCG...........................................................................................................................................................2711.001.00--1.00----------------------------------------------------
.................................................................................................................................CTTGCACTCATCCCATGCCCTTC.....................................................2311.001.00------------------------------------------------1.00------
............................................................................................................................................................TCATCGATGTGAGGCCAGCCTCCACTCGCCTC.................321.000.00----------1.00--------------------------------------------
.............................................................................................................................ACACCTTGCACTCATCCCATA...........................................................2111.003.00-1.00-----------------------------------------------------
........................................................GGGGAGGGGCGGGGCCTCCC.................................................................................................................................201.000.00-------------1.00-----------------------------------------
.........................TCTGGAGCAGTTGCTGCAGGAGGCGATC........................................................................................................................................................2811.002.00---1.00---------------------------------------------------
......................CTGTCTGGAGCAGTTGCTGCAGGAGGCG...........................................................................................................................................................2811.001.00-----------------------------------------1.00-------------
..................................GTTGCTGCAGGAGGCG...........................................................................................................................................................1620.500.50------------0.50------------------------------------------
....................TACTGTCTGGAGCAGTTGCT.....................................................................................................................................................................2020.500.50-----------------------------------------------------0.50-
.........................TCTGGAGCAGTTGCTGCAGGAGG.............................................................................................................................................................2320.500.50------------------------------------------------------0.50
................................................................................CTCGGGGTGGGCTGGGTGTCCAAGGC...................................................................................................2620.500.50-0.50-----------------------------------------------------
........................................................GGGGAGGGGCGGGGCCTCG..................................................................................................................................1950.200.20-------------0.20-----------------------------------------

Antisense strand
GGGGCAACCGGCCCCACATCTACTGTCTGGAGCAGTTGCTGCAGGAGGCGGTGAGGGGGGAGGGGCGGGGCCTCGGGAGGCTCGGGGTGGGCTGGGTGTCCAAGGCCATGGCCATAACTGTGTCCACACCTTGCACTCATCCCATGCCCTTCTAGATCATCGATGTGAGGCCAGCCTCCACTCGCTTCTTGCCACAAGGGACCAG
...................................................................((((((....))))))((((((((.((((((..(((((...(((.(((....))).)))..))))))))))).))))).)))........................................................
...................................................................68.....................................................................................155................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784GSM532876(GSM532876)
G547T. (cervix)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
.....................................................AGGGGGGAGGGGCGGGGT...................................................................................................................................... 181.000.00---------1.00---------------------------------------------
.......................................TGCAGGAGGCGGTGACTTT................................................................................................................................................... 191.000.00----------------1.00--------------------------------------
..............................................CCTCCCCCCTCACCGCC.............................................................................................................................................. 1730.330.33-----0.33-------------------------------------------------