ID: uc003slx.2_intron_6_0_chr7_2406084_f
GENE: (7)
chr7:2406034-2406209+


(2)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(6)
BREAST 		(12)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(5)
HELA 		(4)
LIVER 		(2)
OTHER 		(11)
SKIN 		(2)
XRN.ip

Sense strand
AAGAAGAGGGGTTTTCACTGTGAGAGCTCAGCCCATTGGCCTATTTTTAAGTAAGTGGACCATTGTAACGAGCTCTGTAGCCTTTGTCTTTTCATGGGAATACCCTGGCACTTTTGTTTTTCTTAGGTGGAGCCATGATGGCAAATTCTTTGCCAGAATGACCCTGGATACGCTTA
.....................................................((((..((......(((((((....)))..))))........(((....))).))))))................................................................
..................................................51...........................................................112..............................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM532876(GSM532876)
G547T. (cervix)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR040037(GSM532922)
G243T. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
..................................................GTAAGTGGACCATTGTAACGAGCTCTGTAGCCTTTGTCTTTTCATGGGAATACCCTGGCACTTTTGTTTTTCTTAGA.................................................77113.004.006.00--7.00------------------------------------------
..................................................GTAAGTGGACCATTGTAACGAGCTCTGTAGCCTTTGTCTTTTCATGGGAATACCCTGGCACTTTTGTTTTTCTTAGT.................................................77110.004.0010.00---------------------------------------------
..................................................GTAAGTGGACCATTGTAACGAGCTCTGTAGCCTTTGTCTTTTCATGGGAATACCCTGGCACTTTTGTTT.........................................................6918.008.008.00---------------------------------------------
...............................................................................................................................................AATTCTTTGCCAGAATG................1717.007.00----7.00-----------------------------------------
..................................................GTAAGTGGACCATTGTAACGAGCTCTGTAGCCTTTGTCTTTTCATGGGAATACCCTGGCACTTTTGTTTTTCTTATT.................................................7717.001.007.00---------------------------------------------
..................................................GTAAGTGGACCATTGTAACGAGCTCTGTAGCCTTTGTCTTTTCATGGGAATACCCTGGCACTTTTGTTTTTCTTAG..................................................7614.004.00---3.00----------1.00-------------------------------
.............TTCACTGTGAGAGCTCAGC................................................................................................................................................1914.004.00-2.00--2.00-----------------------------------------
....AGAGGGGTTTTCACTGTGAG........................................................................................................................................................2014.004.00-2.002.00-------------------------------------------
...AAGAGGGGTTTTCACTGTGAG........................................................................................................................................................2114.004.00--4.00-------------------------------------------
..........................................................................................................................................................AGAATGACCCTGGATATTT...193.000.00--------3.00-------------------------------------
..........................................................................................................................................................AGAATGACCCTGGATACGCT..2013.003.00------3.00---------------------------------------
..................................................GTAAGTGGACCATTGTAACGAGC.......................................................................................................2313.003.00-2.00---------------1.00----------------------------
..................................................GTAAGTGGACCATTGTAACGAGCTC.....................................................................................................2513.003.00--3.00-------------------------------------------
...................GTGAGAGCTCAGCCCATTGGCCTT.....................................................................................................................................242.000.00-------2.00--------------------------------------
..................................................GTAAGTGGACCATTGTAAC...........................................................................................................1912.002.00-2.00--------------------------------------------
....AGAGGGGTTTTCACTGTGA.........................................................................................................................................................1912.002.00-2.00--------------------------------------------
............................................................................................CATGGGAATACCCTGGCACTTTTGTTTTTCTTA...................................................3312.002.00----------------1.00-----------------------1.00-----
..................................................GTAAGTGGACCATTGTAACGAGCTCTGTAGCCTTTGTCTTTTCATGGGAATACCCTGGCACTT...............................................................6312.002.002.00---------------------------------------------
................................................................................................................................GGAGCCATGATGGCAAAT..............................1812.002.00---------2.00------------------------------------
.AGAAGAGGGGTTTTCACTGTGAGAG......................................................................................................................................................2512.002.00-----2.00----------------------------------------
..........................................................ACCATTGTAACGAGCTTTGT..................................................................................................201.000.00---------------------------1.00------------------
...............CACTGTGAGAGCTCAGCCCATTG..........................................................................................................................................2311.001.00-1.00--------------------------------------------
....AGAGGGGTTTTCACTGTGAGAGC.....................................................................................................................................................2311.001.00---------------------1.00------------------------
...................GTGAGAGCTCAGCCCATTGGCCTA.....................................................................................................................................2411.001.00--------------------1.00-------------------------
................ACTGTGAGAGCTCAGCCCATTGGC........................................................................................................................................2411.001.00--1.00-------------------------------------------
..............................................................................................TGGGAATACCCTGGCACTTTTGTTTTTCTTAG..................................................3211.001.00-----------1.00----------------------------------
.................CTGTGAGAGCTCAGCCCATTGGCCTA.....................................................................................................................................2611.001.00------------------------------------1.00---------
...........TTTTCACTGTGAGAGCTCAGCCCATTG..........................................................................................................................................2711.001.00----------1.00-----------------------------------
.....................GAGAGCTCAGCCCATTG..........................................................................................................................................1711.001.00--------------------------------1.00-------------
..GAAGAGGGGTTTTCACTGT...........................................................................................................................................................1911.001.00-----1.00----------------------------------------
...............................................................................................................................................AATTCTTTGCCAGAATGACCCT...........2211.001.00-----1.00----------------------------------------
.......................................................................................CTTTTCATGGGAATACCCTGG....................................................................2111.001.00-----------1.00----------------------------------
..................................................GTAAGTGGACCATTGTAACGAGCTCTGTAG................................................................................................3011.001.00---------------------------------------1.00------
..................................................GTAAGTGGACCATTGTAACGAGCTCTGTAGCCTTTGTCTTTTCATGGGAATACCCTGGCACTTTTGTTTTTCTTA...................................................7511.001.00-----------------------------------------1.00----
..................................................GTAAGTGGACCATTGTAACGAGCTCTGTAGC...............................................................................................3111.001.00-------------------------------1.00--------------
.............TTCACTGTGAGAGCTCAGCC...............................................................................................................................................2011.001.00-------------------------------------1.00--------
..................TGTGAGAGCTCAGCCCATTGGCCTAT....................................................................................................................................2611.001.00--------------------------1.00-------------------
....AGAGGGGTTTTCACTGTGAGA.......................................................................................................................................................2111.001.00---------------1.00------------------------------
..........GTTTTCACTGTGAGAGCT....................................................................................................................................................1811.001.00------------1.00---------------------------------
.....GAGGGGTTTTCACTGTGAGAGCTCAGCC...............................................................................................................................................2811.001.00----------------------1.00-----------------------
.....GAGGGGTTTTCACTGTGAGAGCTC...................................................................................................................................................2411.001.00----------------------------1.00-----------------
..........GTTTTCACTGTGAGAGCTCAGCCCATTG..........................................................................................................................................2811.001.00-----------------------1.00----------------------
..........................................................................................................................................................AGAATGACCCTGGATACGCTT.2111.001.00-----1.00----------------------------------------
.................................CATTGGCCTATTTTTAAGTGGA.........................................................................................................................221.000.00--------------------------------------1.00-------
.AGAAGAGGGGTTTTCACTGTGAG........................................................................................................................................................2311.001.00-----1.00----------------------------------------
...................................................TAAGTGGACCATTGTAACG..........................................................................................................1911.001.00-------1.00--------------------------------------
..................................................GTAAGTGGACCATTGTAACGAGCTCTGGAGC...............................................................................................311.000.00----------1.00-----------------------------------
...................GTGAGAGCTCAGCCCATTGGCC.......................................................................................................................................2211.001.00-----1.00----------------------------------------
....................TGAGAGCTCAGCCCATTGGC........................................................................................................................................2011.001.00----------------------------------1.00-----------
...................GTGAGAGCTCAGCCCATTGGA........................................................................................................................................211.000.00-1.00--------------------------------------------
...........................................................................................................................................................GAATGACCCTGGATACGCT..1911.001.00-----------------------------1.00----------------
.........................................................GACCATTGTAACGAGCTCTGTAG................................................................................................2311.001.00-------------------1.00--------------------------
..............................................................................................................CTTTTGTTTTTCTTAGGTGGAGCC..........................................2411.001.00-------------1.00--------------------------------
.....................................................................................................ACCCTGGCACTTTTGTTTTTCTTAG..................................................2511.001.00------------------1.00---------------------------
...................GTGAGAGCTCAGCCCATTGGCCTTT....................................................................................................................................251.000.00-1.00--------------------------------------------
....................TGAGAGCTCAGCCCATTGGCCTATT...................................................................................................................................2511.001.00-----1.00----------------------------------------
............................................................CATTGTAACGAGCTCTGTAG................................................................................................2011.001.00-------------------------1.00--------------------
..............................................................................................................................................AAATTCTTTGCCAGAATGACCCTGGATACG....3011.001.00---------------------------------1.00------------
..........................................................ACCATTGTAACGAGCTCTGTAG................................................................................................2211.001.00-----------------------------------1.00----------
.AGAAGAGGGGTTTTCACT.............................................................................................................................................................1820.500.50------------0.50---------------------------------
................................................................................................................................GGAGCCATGATGGCAAA...............................1720.500.50---------0.50------------------------------------
..............................................................................................................................GTGGAGCCATGATGGCTA................................1840.250.25--------------------------------------------0.25-
..............................................................................................................................GTGGAGCCATGATGGC..................................1640.250.25-------------------------------------------0.25--
.....GAGGGGTTTTCACTGTG..........................................................................................................................................................1750.200.20---------------------------------------------0.20

Antisense strand
AAGAAGAGGGGTTTTCACTGTGAGAGCTCAGCCCATTGGCCTATTTTTAAGTAAGTGGACCATTGTAACGAGCTCTGTAGCCTTTGTCTTTTCATGGGAATACCCTGGCACTTTTGTTTTTCTTAGGTGGAGCCATGATGGCAAATTCTTTGCCAGAATGACCCTGGATACGCTTA
.....................................................((((..((......(((((((....)))..))))........(((....))).))))))................................................................
..................................................51...........................................................112..............................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM532876(GSM532876)
G547T. (cervix)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR040037(GSM532922)
G243T. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
......................................................................................................CCCTGGCACTTTTGTATTT....................................................... 191.000.00------------------------------------------1.00---
......................................................................................................CCCTGGCACTTTTGTAT......................................................... 171.000.00------------------------1.00---------------------
......................................................................................................CCCTGGCACTTTTGTATCT....................................................... 191.000.00------------------------------1.00---------------