ID: uc003skn.2_intron_24_0_chr7_1524839_r
GENE: INTS1(23)
chr7:1524789-1524975-


(1)
AGO1.ip 		(1)
AGO2.ip 		(1)
BRAIN 		(1)
BREAST 		(15)
CELL-LINE 		(3)
CERVIX 		(4)
HEART 		(2)
HELA 		(2)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGCCTCTGTTCGACAGCGTCAGGAGCACCACAGCCCTGGCCCTGCAGCAGGTGAGGGCGCTGACCGGGGCCGCGGCAGGGAAAGATGAGAGGGCCGCAGCCCTGCCCTGTTGCCGCTCAGACCACCCTCCCCTCCAGGCAATCCACATGGAGACTGATCCCCAGACCATCAGCGCCTACCTGATCTA
....................................................(((((...((....((((.(((((((((.........(((((....))))).))))))))).))))....)))))))..........................................................
..................................................51....................................................................................137................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040029(GSM532914)
G026T. (cervix)		SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189785SRR029128(GSM416757)
H520. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR040027(GSM532912)
G220T. (cervix)		SRR343334
.............................................................................................................TTGCCGCTCAGACCACCCTCCC........................................................22111.0011.0010.00------------------------------------1.00--
.............................................................................................................TTGCCGCTCAGACCACCCTCCCT.......................................................2319.0011.007.00----------------------1.001.00---------------
.............................................................................................................TTGCCGCTCAGACCACCCTCC.........................................................2119.009.006.00---2.00--1.00--------------------------------
..................................................GTGAGGGCGCTGACCGGGGTATC..................................................................................................................236.000.00--6.00-------------------------------------
...................................................TGAGGGCGCTGACCGGGGCCGCGGCAGGGAAAGATGAGAGGGCCGCAGCCCTGCCCTGTTGCCGCTCAGT..................................................................704.000.00-4.00--------------------------------------
.............................................................................................................TTGCCGCTCAGACCACCCTCT.........................................................214.000.00---3.00--------------------------------1.00---
..................................................GTGAGGGCGCTGACCGGG.......................................................................................................................1813.003.00---------------2.00---------1.00--------------
..................................................GTGAGGGCGCTGACCGGGGCCGCGGCAGGGAAAGATGAGAGGGCCGCAGCCCTGCCCTGTTGCCGCTCAGACCACCCTCCCCTCCAG..................................................8713.003.00---------3.00------------------------------
.............................................................................................................TTGCCGCTCAGACCACCCTCCAAT......................................................2413.009.003.00---------------------------------------
...................................................TGAGGGCGCTGACCGGGGCCGCGGCAGGGAAAGATGAGAGGGCCGCAGCCCTGCCCTGTTGCCGCTCAGA..................................................................7013.003.00-3.00--------------------------------------
.............................................................................................................TTGCCGCTCAGACCACCCTCCA........................................................2213.009.003.00---------------------------------------
........................................................................CGGCAGGGAAAGATGAGAGGGC.............................................................................................2213.003.00-----------2.00------------------1.00---------
.............................................................................................................TTGCCGCTCAGACCACCCTCCCCAT.....................................................2513.001.003.00---------------------------------------
.............................................................................................................TTGCCGCTCAGACCACCCTCCCCTTT....................................................262.000.002.00---------------------------------------
..............................................................................................................TGCCGCTCAGACCACCCTCCCC.......................................................2212.002.002.00---------------------------------------
.......GTTCGACAGCGTCAGGAG..................................................................................................................................................................1812.002.00--------------1.00-----1.00-------------------
.............................................................................................................TTGCCGCTCAGACCACCCTCCCCTA.....................................................251.000.00-------1.00--------------------------------
...................................................TGAGGGCGCTGACCGGGGCCGCGGA...............................................................................................................251.000.00----------------1.00-----------------------
...................................................................................................................................................TGGAGACTGATCCCCAGACCATCAGCGC............2811.001.00-----------1.00----------------------------
..................................................GTGAGGGCGCTGACCGGGGCCGCGGCAGG............................................................................................................2911.001.00----1.00-----------------------------------
...............................AGCCCTGGCCCTGCAGCATG........................................................................................................................................201.000.00--------1.00-------------------------------
................................................................................................CAGCCCTGCCCTGTTGCCGCTCA....................................................................2311.001.00-------------------1.00--------------------
........................................................................CGGCAGGGAAAGATGACACT...............................................................................................201.000.00--------------------------------------1.00-
.............................................................................................................TTGCCGCTCAGACCACCCTCCCC.......................................................2311.001.00-------1.00--------------------------------
..................................................GTGAGGGCGCTGACCGGT.......................................................................................................................181.000.00----------1.00-----------------------------
...............................................................................................................................................................CCCAGACCATCAGCGCCTAC........2011.001.00-----------------1.00----------------------
.............................................................................................................................................TCCACATGGAGACTGATCCCCAGACCA...................2711.001.00-----1.00----------------------------------
.............................................................................................................TTGCCGCTCAGACCACCCTT..........................................................201.000.00----------1.00-----------------------------
................................................................................................................................................ACATGGAGACTGATCCCCAGACC....................2311.001.00------1.00---------------------------------
..........................................................................GCAGGGAAAGATGAGAGGGCCG...........................................................................................2211.001.00----------------------------------1.00-----
...........................................................................CAGGGAAAGATGAGAGGGC.............................................................................................1911.001.00-------------------------------1.00--------
..................................................GTGAGGGCGCTGACCGGGGCCGCGGCAG.............................................................................................................2811.001.00------------------1.00---------------------
.......GTTCGACAGCGTCAGGAGCACC..............................................................................................................................................................2211.001.00-----1.00----------------------------------
....................................................................................................................................................GGAGACTGATCCCCAGACC....................1911.001.00------------1.00---------------------------
....TCTGTTCGACAGCGTCAGGAGCA................................................................................................................................................................2311.001.00------1.00---------------------------------
.........TCGACAGCGTCAGGAG..................................................................................................................................................................1611.001.00------------1.00---------------------------
............................................................................................................................................................ATCCCCAGACCATCAGCGCCTACCTGATC..2911.001.00-----1.00----------------------------------
..............................................................................................................TGCCGCTCAGACCACCCTCCCTTA.....................................................241.000.00-----------------------------------1.00----
.............................................................................................................TTGCCGCTCAGACCACCCTCCCTA......................................................2411.0011.00---------------------------1.00------------
.....................................................................................................................................................GAGACTGATCCCCAGACC....................1811.001.00------1.00---------------------------------
...........................................................................................................................................AATCCACATGGAGACTGATCCCC.........................2311.001.00------------1.00---------------------------
......TGTTCGACAGCGTCAGGA...................................................................................................................................................................1811.001.00-----1.00----------------------------------
.............................................................................................................TTGCCGCTCAGACCACCCTCCT........................................................2211.009.00-----------------------------1.00----------
...................................................TGAGGGCGCTGACCGGGGCCGCGGC...............................................................................................................2511.001.00----------1.00-----------------------------
................................................................CGGGGCCGCGGCAGGGA..........................................................................................................1711.001.00---------------------1.00------------------
..................................................GTGAGGGCGCTGACCGGGGCCGTC.................................................................................................................241.000.00----1.00-----------------------------------
...CTCTGTTCGACAGCGTCAGGAG..................................................................................................................................................................2211.001.00---1.00------------------------------------
................................................................................................................................................ACATGGAGACTGATCCCC.........................1811.001.00--------------1.00-------------------------
...................................................TGAGGGCGCTGACCGGGGC.....................................................................................................................1911.001.00----------------1.00-----------------------
.......................................................GGCGCTGACCGGGGC.....................................................................................................................1550.200.20---------------------------------------0.20

Antisense strand
TGCCTCTGTTCGACAGCGTCAGGAGCACCACAGCCCTGGCCCTGCAGCAGGTGAGGGCGCTGACCGGGGCCGCGGCAGGGAAAGATGAGAGGGCCGCAGCCCTGCCCTGTTGCCGCTCAGACCACCCTCCCCTCCAGGCAATCCACATGGAGACTGATCCCCAGACCATCAGCGCCTACCTGATCTA
....................................................(((((...((....((((.(((((((((.........(((((....))))).))))))))).))))....)))))))..........................................................
..................................................51....................................................................................137................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040029(GSM532914)
G026T. (cervix)		SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189785SRR029128(GSM416757)
H520. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR040027(GSM532912)
G220T. (cervix)		SRR343334
...................TGCTGCAGGGCCAGGGCTGTGGTGCTCCTG.......................................................................................................................................... 3011.001.00-------------1.00--------------------------
....................................................CCGGTCAGCGCCCTC........................................................................................................................ 1511.001.00----------------------------1.00-----------
.................................................................................................................CGCTCAGACCACCCTTG......................................................... 171.000.00---------------------------------1.00------
.......................................................................GCGGCAGGGAAAGATCGCC................................................................................................. 191.000.00--------------------------1.00-------------
...................................................................................................CCCTGCCCTGTTGCCGCTACCG.................................................................. 221.000.00--------1.00-------------------------------
......................................................................................GAGAGGGCCGCAGCCTCC................................................................................... 181.000.00----------------------1.00-----------------
..................................................................................................................GCTCAGACCACCCTCAC........................................................ 171.000.00--------------------------------1.00-------
...................................................................................................CCCTGCCCTGTTGCCGCTACTG.................................................................. 221.000.00--------1.00-------------------------------
......................GAGCACCACAGCCCTGTG................................................................................................................................................... 181.000.00-------------1.00--------------------------
.........................................................................................CAGGGCTGCGGCCCT................................................................................... 1590.110.11-------------0.11--------------------------