ID: uc003qxo.1_intron_5_0_chr6_170667407_f.3p
GENE: FAM120B(6)
chr6:170697175-170697424+


(2)
BRAIN 		(4)
BREAST 		(22)
CELL-LINE 		(2)
HELA 		(1)
LIVER 		(2)
OTHER 		(8)
SKIN 		(2)
UTERUS

Sense strand
CTGTCAGCTGAGGTTGTTTCCAAGGCCTCTGTAATCAGTAGAGCTGGTGAAGCTCAGCTTTGAGGATGCAGCTATGGTGATGCTGTCCAGTTACTGAGTGAGCATCCGTTCTGAGCAGAGTAACTTTGCAGAGCTGAGATCTGTTTCCTGCATGTGTGACTCCTGTCTTACATTTTTGGTGTGTGTTCTGGTCTCCACAGCCTGATTACATCAACCCCAGAGCCGTGCAGCTGGGCTCCCTTCTCGTCCG
...................................................................((((..((((.((((((...(((...)))....)))))).(((((..((((((...)))))))))))......))))...)))).((((.((..((.....(((((.......)))))....))..))))))...................................................
...................................................................68..................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037936(GSM510474)
293cand1. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189787SRR029129(GSM416758)
SW480. (cell line)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........................................................................TATGGTGATGCTGTCCAGTTACTGAGT.......................................................................................................................................................27195.0095.0025.0023.0012.007.005.00-3.002.00-2.002.00-1.002.002.002.001.00-1.001.00--1.00-------1.00-1.00--------1.00-
.......................................................................CTATGGTGATGCTGTCCAGTTACTGAGT.......................................................................................................................................................2817.007.004.00----1.00------1.00---------------1.00--------------
........................................................................TATGGTGATGCTGTCCAGTTAC............................................................................................................................................................2213.003.00--------2.00--------1.00-------------------------
........................................................................TATGGTGATGCTGTCCAGTTACTGAGTGA.....................................................................................................................................................2912.002.00---2.00---------------------------------------
.......................................................................CTATGGTGATGCTGTCCAGTTA.............................................................................................................................................................2212.002.00-----------------------1.00---------------1.00---
........................................................................TATGGTGATGCTGTCCAGTTACTGAGTGAGA...................................................................................................................................................312.000.00-----2.00-------------------------------------
.................................................................................................................................................................................................................ATCAACCCCAGAGCCGTG.......................1811.001.00------------------------------------1.00------
.........................................................................................................................................................................ACATTTTTGGTGTGTGTTCTGGT..........................................................2311.001.00---------------------------1.00---------------
...........................................................................GGTGATGCTGTCCAGTTACTGAGT.......................................................................................................................................................2411.001.001.00------------------------------------------
........................................................................TATGGTGATGCTGTCCAGTTACTGAAT.......................................................................................................................................................271.000.00----------1.00--------------------------------
......................................................CAGCTTTGAGGATGCAGCTATGGTGA..........................................................................................................................................................................2611.001.00--------------------1.00----------------------
........................................................................TATGGTGATGCTGTCCAGTTACT...........................................................................................................................................................2311.001.00--------1.00----------------------------------
.........................................................................................................CCGTTCTGAGCAGAGTAACTTTGCAGAGCTGAGA...............................................................................................................3411.001.00-----------------------------1.00-------------
......................................................................................................................................................................................................................................CTGGGCTCCCTTCTCGTCCGTGGC241.000.00-------------------------------------1.00-----
..................................................................................................................................................................................................................TCAACCCCAGAGCCGTG.......................1711.001.00---------------------------------1.00---------
........................................................................TATGGTGATGCTGTCCAGTTACTGAGTTAGA...................................................................................................................................................3111.0095.00-----1.00-------------------------------------
........................................................................TATGGTGATGCTGTCCAGTTACTGAG........................................................................................................................................................2611.001.00---------1.00---------------------------------
.........................................................................................................................AACTTTGCAGAGCTGAGC...............................................................................................................181.000.00-----------1.00-------------------------------
.............................TGTAATCAGTAGAGCTGGTGAAGC.....................................................................................................................................................................................................2411.001.00-----------------------------------1.00-------
........................................................................TATGGTGATGCTGTCCAGTTACTGAGTG......................................................................................................................................................2811.001.00-------1.00-----------------------------------
............................................................TGAGGATGCAGCTATGGTG...........................................................................................................................................................................1911.001.00--------------------------------------1.00----

Antisense strand
CTGTCAGCTGAGGTTGTTTCCAAGGCCTCTGTAATCAGTAGAGCTGGTGAAGCTCAGCTTTGAGGATGCAGCTATGGTGATGCTGTCCAGTTACTGAGTGAGCATCCGTTCTGAGCAGAGTAACTTTGCAGAGCTGAGATCTGTTTCCTGCATGTGTGACTCCTGTCTTACATTTTTGGTGTGTGTTCTGGTCTCCACAGCCTGATTACATCAACCCCAGAGCCGTGCAGCTGGGCTCCCTTCTCGTCCG
...................................................................((((..((((.((((((...(((...)))....)))))).(((((..((((((...)))))))))))......))))...)))).((((.((..((.....(((((.......)))))....))..))))))...................................................
...................................................................68..................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037936(GSM510474)
293cand1. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189787SRR029129(GSM416758)
SW480. (cell line)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................................................................................................CTGTTTCCTGCATGTCC............................................................................................. 173.000.00-----------1.00------------1.001.00-----------------
.......................................................................................................................................................................................................................CCCAGAGCCGTGCAGCAGAG............... 201.000.00---------------------1.00---------------------
.....AGCTGAGGTTGTTTCCACCG................................................................................................................................................................................................................................. 201.000.00--------------------------1.00----------------
....CAGCTGAGGTTGTTTCCACA.................................................................................................................................................................................................................................. 201.000.00----------------------------------------1.00--
...TCAGCTGAGGTTGTTTCCAAAGA................................................................................................................................................................................................................................ 231.000.00----------------------------------1.00--------
..........................................................................TGGTGATGCTGTCCAAG............................................................................................................................................................... 171.000.00-------------------------------1.00-----------
..........................................................................................................................................CATGCAGGAAACAGAT................................................................................................ 1630.330.33------------------------------------------0.33