ID: uc003qsw.3_intron_0_0_chr6_160211672_f
GENE: (1)
chr6:160211622-160212021+


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(4)
AGO2.ip 		(1)
AGO3.ip 		(13)
B-CELL 		(3)
BRAIN 		(4)
BREAST 		(36)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(5)
HELA 		(6)
LIVER 		(1)
OTHER 		(20)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
GGCGCTTCGGTCGCGGTTTTGGGGGTTGTTCTCGGTTTGCAGGAACCCTGGTAATTAGTCTTGCCCCCCTTCTCCCAGCTCACTCGCCTGGGCTTGCACAGTACATTGGAACGTGCGGGTTCTATTTTGTATTCGACGTGCCGGATCGAAATAGAGCTCGCGGCACTGCGAAGACCACAGTAGGAAGTTAAGGACGGGGTCAGTGCTGACTCCACCCTGTGGGCATACGTATTTTTCGTCCCCTCGGGCCTAAAGATTGGGGGTGTAAAAGCGGATAGACGTTAGAGCGGGTTCGTGCGCTGTCCATATCCGTCATTTTTAAGCCCTGTGCGGTTTTTCCCGTTGCCCAGGGTGCAGGTTCGCAGCCCTGTCAACCAGCTCCGAGCCGGCAGCGAAACCT
............................................................................................................................................((.((((....(((.(((((.((....(((((((..((.(((....(((.(((..(((((((....)))))))..)))...))).)))))..)))))))..)).))))))))..)))).))...........................................................................................................................................
...........................................................................................................................................140.........................................................................................................................................280......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM339994(GSM339994)
hues6. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		TAX577590(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038860(GSM458543)
MM426. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040027(GSM532912)
G220T. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189783
................................................................................................................................................ATCGAAATAGAGCTCGCGG.............................................................................................................................................................................................................................................19118.0018.00-14.00---1.00---------------------------------------------1.00------1.00--------------------------1.00--------------
................................................................................................................................................ATCGAAATAGAGCTCGCGGCA...........................................................................................................................................................................................................................................21117.0017.00---2.00--2.003.00-----2.00-1.00-------------2.00----1.00--1.00------1.00------------------1.00-------1.00----------------------------
................................................................................................................................................ATCGAAATAGAGCTCGCGGCTT..........................................................................................................................................................................................................................................22111.003.00-------2.00-2.00----1.00---1.001.00----------------------------1.00----------------------------1.00------------1.00---1.00-----
................................................................................................................................................ATCGAAATAGAGCTCGCGGTT...........................................................................................................................................................................................................................................2117.0018.00-2.00-1.00-------------1.00------------1.00-----1.00---------------------------1.00-----------------------------------
................................................................................................................................................ATCGAAATAGAGCTCGCGGCT...........................................................................................................................................................................................................................................2117.003.001.00--3.00-----------------------1.001.00--------------1.00--------------------------------------------------------
................................................................................................................................................ATCGAAATAGAGCTCGCGGCAT..........................................................................................................................................................................................................................................2216.0017.00---------1.00-------2.00-1.00-----------------------------1.00-----------------------------------------1.00--------
.....................................................................................................................GGTTCTATTTTGTATC...........................................................................................................................................................................................................................................................................166.000.00----6.00-----------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................GATTGGGGGTGTAAAAGCGGAT............................................................................................................................2214.004.004.00---------------------------------------------------------------------------------------------------
...................................................................................................................CGGGTTCTATTTTGTTGGT..........................................................................................................................................................................................................................................................................193.000.00---------------------2.00-----------1.00------------------------------------------------------------------
................................................................................................................................................ATCGAAATAGAGCTCGCGGCAA..........................................................................................................................................................................................................................................2213.0017.00-------------------------1.00------------------------------1.00------------1.00------------------------------
...............................................................................................................................................................................................................................................................................CGGATAGACGTTAGAGCGGGTTCGTGCGCTGT.................................................................................................3213.003.00----------3.00-----------------------------------------------------------------------------------------
................................................................................................................................................ATCGAAATAGAGCTCGCGGCAC..........................................................................................................................................................................................................................................2213.003.00-------------1.00------------------------------------------------1.00--1.00----------------------------------
................................................................................................................................................ATCGAAATAGAGCTCGCGGC............................................................................................................................................................................................................................................2013.003.002.00------------------1.00--------------------------------------------------------------------------------
.............................................................................................................................................CGGATCGAAATAGAGCTCGCGGC............................................................................................................................................................................................................................................2312.002.00-----------------------------------------------------------------------------------1.00---------1.00------
...................................................................................................................................................GAAATAGAGCTCGCGGCAT..........................................................................................................................................................................................................................................192.000.00------------2.00---------------------------------------------------------------------------------------
........................................................................................................................................CGTGCCGGATCGAAATAGAGC...................................................................................................................................................................................................................................................2112.002.002.00---------------------------------------------------------------------------------------------------
..............................................................................................................................................................CGCGGCACTGCGAAGACCACAGTAG.........................................................................................................................................................................................................................2512.002.00--2.00-------------------------------------------------------------------------------------------------
................................................................................................................................................ATCGAAATAGAGCTCGCGGTTT..........................................................................................................................................................................................................................................2212.0018.00-----------------------2.00----------------------------------------------------------------------------
...................................................................................................................CGGGTTCTATTTTGTTG............................................................................................................................................................................................................................................................................172.000.00---------------------------------------1.00--------------------1.00---------------------------------------
................................................................................................................................................................................ACAGTAGGAAGTTAAGGACGG...........................................................................................................................................................................................................2112.002.00-----------------------------------2.00----------------------------------------------------------------
...............................................................................................................................................GATCGAAATAGAGCTCGCGGCA...........................................................................................................................................................................................................................................2212.002.00--1.00-----------------------------------------------------------------1.00-------------------------------
...........................................................................................................................................GCCGGATCGAAATAGAGCTCGCG..............................................................................................................................................................................................................................................2312.002.00----------------2.00-----------------------------------------------------------------------------------
...................................................................................................................................................GAAATAGAGCTCGCGGTTA..........................................................................................................................................................................................................................................192.000.00---------------2.00------------------------------------------------------------------------------------
.........................................................................................................................................GTGCCGGATCGAAATAGAGCTCGC...............................................................................................................................................................................................................................................2412.002.00--------------------------2.00-------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................TAGACGTTAGAGCGGGTTCGTG.......................................................................................................2212.002.00--------------------------------------2.00-------------------------------------------------------------
........................................................................................................................................................................CGAAGACCACAGTAGGAAGTTAAGGACGG...........................................................................................................................................................................................................2911.001.00-----------------------------------------------1.00----------------------------------------------------
........................................................................................................................................................AGAGCTCGCGGCACTGCGAAGACCAC..............................................................................................................................................................................................................................2611.001.00-------------------------------1.00--------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................AGACGTTAGAGCGGGTTCG.........................................................................................................1911.001.00----------------------------------------------------1.00-----------------------------------------------
................................CGGTTTGCAGGAACCCTGGG............................................................................................................................................................................................................................................................................................................................................................201.000.00---------------------------------------------------------------------------------1.00------------------
.................................................................................................................................................TCGAAATAGAGCTCGCGGCA...........................................................................................................................................................................................................................................2011.001.00----------------------------------------------------------------------------------1.00-----------------
..............................................................................................................................................................................................................................................................................GCGGATAGACGTTAGAGCG...............................................................................................................1911.001.00-------------------------------------1.00--------------------------------------------------------------
...................................................................................................................CGGGTTCTATTTTGTTGG...........................................................................................................................................................................................................................................................................181.000.00----------1.00-----------------------------------------------------------------------------------------
................................................................................................................................................ATCGAAATAGAGCTCGCGGTTA..........................................................................................................................................................................................................................................2211.0018.00-------------------------------------------------------------------------------1.00--------------------
................................................................................................................................................ATCGAAATAGAGCTCGCGGTAA..........................................................................................................................................................................................................................................2211.0018.00------------------------------------------------------------------1.00---------------------------------
......................................................................................................................................................ATAGAGCTCGCGGCACTGCGAAGACC................................................................................................................................................................................................................................2611.001.00-----------------------------------------------------------------------------------------1.00----------
...............................................................................................................................................GATCGAAATAGAGCTCGCGGCTTT.........................................................................................................................................................................................................................................241.000.00--------------------------------------------------------------------------1.00-------------------------
.......................................................................................................................................................................................................................................................................................................................................GTGCGGTTTTTCCCGCCTG......................................................191.000.00-------------------------------------------------------------------------------------------------1.00--
..................................GTTTGCAGGAACCCTGGGTGC.........................................................................................................................................................................................................................................................................................................................................................211.000.00------------------------------------------1.00---------------------------------------------------------
................................................................................................................................................ATCGAAATAGAGCTCGCGTCT...........................................................................................................................................................................................................................................211.000.00------------------------------1.00---------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................AGCCCTGTCAACCAGCTCCGAGCCGG...........2611.001.00--------------------1.00-------------------------------------------------------------------------------
...............................................................................................................................................GATCGAAATAGAGCTCGCGGCT...........................................................................................................................................................................................................................................221.000.00------------------1.00---------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................CTCCGAGCCGGCAGCGAAACCT2211.001.00-------------------------1.00--------------------------------------------------------------------------
.....................................................................................................................................................................................AGGAAGTTAAGGACGGGGTCAG.....................................................................................................................................................................................................2211.001.00---------------------------------------------1.00------------------------------------------------------
...................................................................................................................................................GAAATAGAGCTCGCGGCACTGCGAAGACC................................................................................................................................................................................................................................2911.001.00----------------------------------------1.00-----------------------------------------------------------
................................................................................................................................................ATCGAAATAGAGCTCGCGGTA...........................................................................................................................................................................................................................................2111.0018.00--------------------1.00-------------------------------------------------------------------------------
.............................................................................................................AACGTGCGGGTTCTATT..................................................................................................................................................................................................................................................................................1711.001.00-------------------------------------------------------------------1.00--------------------------------
........................................................................................................................................................AGAGCTCGCGGCACTGCGAAGACCA...............................................................................................................................................................................................................................2511.001.00------1.00---------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................CTGTCAACCAGCTCCGAGCCGGCAGCGA.....2811.001.00---------------------------------------------------------1.00------------------------------------------
.........................................................................................................................................GTGCCGGATCGAAATAGAGC...................................................................................................................................................................................................................................................2011.001.001.00---------------------------------------------------------------------------------------------------
................................................................................................................................................ATCGAAATAGAGCTCGCGGT............................................................................................................................................................................................................................................2011.0018.00-------------------------------------------------------1.00--------------------------------------------
......................................................................................................................................................ATAGAGCTCGCGGCACTGC.......................................................................................................................................................................................................................................1911.001.00----------------------------------------------1.00-----------------------------------------------------
........................................................................................................................................CGTGCCGGATCGAAATAGAG....................................................................................................................................................................................................................................................2011.001.00------------------------------------------------------------------------------------------------1.00---
..................................................................................................................................................................................................................................................CTCGGGCCTAAAGATTGGGG..........................................................................................................................................2011.001.00--------------------------------------------------------------------------------------1.00-------------
...........................................................................................................................................GCCGGATCGAAATAGAGCTCGCGGC............................................................................................................................................................................................................................................2511.001.00--1.00-------------------------------------------------------------------------------------------------
................................................................................................................................................ATCGAAATAGAGCTCGCGGTTAA.........................................................................................................................................................................................................................................2311.0018.00------------------------------------1.00---------------------------------------------------------------
...............................................................................................................................................................................................................................................................................CGGATAGACGTTAGAGCGGG.............................................................................................................2011.001.00--------1.00-------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................ACCAGCTCCGAGCCGGC..........1711.001.00-----------------------------------------------------------1.00----------------------------------------
.......................................CAGGAACCCTGGTAATTAGTCTTGC................................................................................................................................................................................................................................................................................................................................................2511.001.00---------------------------------------------------------------------------------------1.00------------
...........................................................................................................................................GCCGGATCGAAATAG......................................................................................................................................................................................................................................................1511.001.00-----1.00----------------------------------------------------------------------------------------------
............................................................................................................................................CCGGATCGAAATAGAGCTCGCGG.............................................................................................................................................................................................................................................2311.001.00---------------------------------1.00------------------------------------------------------------------
............................................................................................................................................CCGGATCGAAATAGAGCTC.................................................................................................................................................................................................................................................1911.001.00-----1.00----------------------------------------------------------------------------------------------
...............................................................................................................................................GATCGAAATAGAGCTCGCGGTT...........................................................................................................................................................................................................................................221.000.00-------------1.00--------------------------------------------------------------------------------------
.....................................................................................................................................CGACGTGCCGGATCGAAATAGAGCT..................................................................................................................................................................................................................................................2511.001.00--------------------------------------------------1.00-------------------------------------------------
............................................................................................................................................CCGGATCGAAATAGAGC...................................................................................................................................................................................................................................................1711.001.00-----1.00----------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................CGGATAGACGTTAGAGCGGGTTCG.........................................................................................................2411.001.00------------------------------------------------------------------------------------1.00---------------
........................................................................................................................................................................................................................CTGTGGGCATACGTATTTTTCG..................................................................................................................................................................2211.001.00-----------1.00----------------------------------------------------------------------------------------
...................................................................................................................................................GAAATAGAGCTCGCGGCAA..........................................................................................................................................................................................................................................191.000.00------------1.00---------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................GCCTAAAGATTGGGGGGG.......................................................................................................................................181.000.00------------------------1.00---------------------------------------------------------------------------
...........................................................................................................................................GCCGGATCGAAATAGAGC...................................................................................................................................................................................................................................................1811.001.00-----1.00----------------------------------------------------------------------------------------------
.................................................................................................................................................TCGAAATAGAGCTCGCGG.............................................................................................................................................................................................................................................1811.001.00-----------------------------------------------------------------------------------------------1.00----
..........................................................................................................................................TGCCGGATCGAAATAGAGCTCGCGGC............................................................................................................................................................................................................................................2611.001.00----------------1.00-----------------------------------------------------------------------------------
...............................................................................................................CGTGCGGGTTCTATTTTGTATTC..........................................................................................................................................................................................................................................................................2311.001.00------------------------------------------------------------------------1.00---------------------------
.......................................................................................................................................................................................................................................................GCCTAAAGATTGGGGGTG.......................................................................................................................................1811.001.00--------------1.00-------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................CCGAGCCGGCAGCGAAACCT2011.001.00------------1.00---------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................AGCGGATAGACGTTAGAGCGGGTTCG.........................................................................................................2611.001.00------------------1.00---------------------------------------------------------------------------------
................................................................................................................................................ATCGAAATAGAGCTCGCGGCATT.........................................................................................................................................................................................................................................2311.0017.00--------------------------------------------------------------------------------------------1.00-------
...............................................................................................................................................................................................................................................................................CGGATAGACGTTAGAGCGGGT............................................................................................................2111.001.00--------1.00-------------------------------------------------------------------------------------------
................................................................................................................................................................................ACAGTAGGAAGTTAAGGACG............................................................................................................................................................................................................2011.001.00---------------------------1.00------------------------------------------------------------------------
..........................................................................................................................................................AGCTCGCGGCACTGCGAAGACCACAG............................................................................................................................................................................................................................2611.001.00-------------------------------1.00--------------------------------------------------------------------
................................................................................................................................................ATCGAAATAGAGCTCGCGGCTAT.........................................................................................................................................................................................................................................2311.003.001.00---------------------------------------------------------------------------------------------------
.....................GGGGTTGTTCTCGGTTTGCAGGAAC..................................................................................................................................................................................................................................................................................................................................................................2511.001.00---------------------------------------------------------------------------1.00------------------------
..................................................................................................................GCGGGTTCTATTTTG...............................................................................................................................................................................................................................................................................1520.500.50--------------------------------------------------------------------------------------------------0.50-
.........................................................................................................................................................................................................................................................CTAAAGATTGGGGGT........................................................................................................................................1570.290.29---------------------------------------------------------------------------------------------------0.29

Antisense strand
GGCGCTTCGGTCGCGGTTTTGGGGGTTGTTCTCGGTTTGCAGGAACCCTGGTAATTAGTCTTGCCCCCCTTCTCCCAGCTCACTCGCCTGGGCTTGCACAGTACATTGGAACGTGCGGGTTCTATTTTGTATTCGACGTGCCGGATCGAAATAGAGCTCGCGGCACTGCGAAGACCACAGTAGGAAGTTAAGGACGGGGTCAGTGCTGACTCCACCCTGTGGGCATACGTATTTTTCGTCCCCTCGGGCCTAAAGATTGGGGGTGTAAAAGCGGATAGACGTTAGAGCGGGTTCGTGCGCTGTCCATATCCGTCATTTTTAAGCCCTGTGCGGTTTTTCCCGTTGCCCAGGGTGCAGGTTCGCAGCCCTGTCAACCAGCTCCGAGCCGGCAGCGAAACCT
............................................................................................................................................((.((((....(((.(((((.((....(((((((..((.(((....(((.(((..(((((((....)))))))..)))...))).)))))..)))))))..)).))))))))..)))).))...........................................................................................................................................
...........................................................................................................................................140.........................................................................................................................................280......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM339994(GSM339994)
hues6. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		TAX577590(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038860(GSM458543)
MM426. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040027(GSM532912)
G220T. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189783
....................................................................................................................GTCGAATACAAAATAGAACCC....................................................................................................................................................................................................................................................................... 2114.004.004.00---------------------------------------------------------------------------------------------------
......................................................................................................................TCCGGCACGTCGAATACAAAATAGAAC............................................................................................................................................................................................................................................................... 2712.002.00--2.00-------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................TGACGGATATGGACAGCG..................................................................................... 1812.002.00----------------------2.00-----------------------------------------------------------------------------
.......................................................................................................................CACGTCGAATACAAAATAGAA.................................................................................................................................................................................................................................................................... 2112.002.00------2.00---------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................AATGACGGATATGGACAGC................................................................................... 1911.001.00--------1.00-------------------------------------------------------------------------------------------
.....................................................................................................................CGATCCGGCACGTCGAATACAAAATAGAACC............................................................................................................................................................................................................................................................ 3111.001.00--1.00-------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................CAGGGCTTAAAAATGACGGAT........................................................................ 2111.001.001.00---------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................GACGGATATGGACAGCGCA...................................................................................... 1911.001.00--------1.00-------------------------------------------------------------------------------------------
.....................................................................................................................GTCGAATACAAAATAGAACC....................................................................................................................................................................................................................................................................... 2011.001.001.00---------------------------------------------------------------------------------------------------
............................................................CTGGGAGAAGGGGGGCAA.................................................................................................................................................................................................................................................................................................................................. 1811.001.00--------------------------------------------------------------------------------1.00-------------------
...............GTTTTGGGGGTTGTTCATTC............................................................................................................................................................................................................................................................................................................................................................................. 201.000.00---------1.00------------------------------------------------------------------------------------------
.........................................................................................ATGTACTGTGCAAGCCC...................................................................................................................................................................................................................................................................................................... 1711.001.00--1.00-------------------------------------------------------------------------------------------------
..............................................................................................................................................................................CCCGTCCTTAACTTCCTACTGTGG.......................................................................................................................................................................................................... 2411.001.00----------------------------------------------------------------------------1.00-----------------------
.....................................................................................ATGTACTGTGCAAGCCCAGGC...................................................................................................................................................................................................................................................................................................... 2111.001.00--------------1.00-------------------------------------------------------------------------------------
....................................................................................................................................GCGAGCTCTATTTCGATCCGGCACGTCGA............................................................................................................................................................................................................................................... 2911.001.00-----1.00----------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................CAGGGCTTAAAAATGACGGA........................................................................ 2011.001.00-----------1.00----------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................ATGACGGATATGGACAGC.................................................................................... 1811.001.00------------------------1.00---------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................ACGGATATGGACAGCGCAC....................................................................................... 1911.001.00--------1.00-------------------------------------------------------------------------------------------
...............................................................................................................................ATCCGGCACGTCGAATACA.............................................................................................................................................................................................................................................................. 1911.001.00--------------------------------1.00-------------------------------------------------------------------
..........TCGCGGTTTTGGGGGAAA.................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00------------------------------------------------------1.00---------------------------------------------
.............................................................GAGTGAGCTGGGAGAAGGGGGGCA........................................................................................................................................................................................................................................................................................................................... 2411.001.00----------------------------------------------------------------------------------------1.00-----------
...................................................................................TTCCAATGTACTGTGCAAGCCCAGGCGA................................................................................................................................................................................................................................................................................................. 2811.001.00----------------------------1.00-----------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................AGGGCTTAAAAATGACGGATATG......................................................................... 2311.001.00-----------------------------------------------------1.00----------------------------------------------
............................................................................................................................................................................................................TACGTATGCCCACAGGGTGGAGTCAGC......................................................................................................................................................................... 2711.001.00------------------------------------------------------------------------------1.00---------------------
..................................................................CCCTTCTCCCAGCTCTGC............................................................................................................................................................................................................................................................................................................................ 181.000.00-------------------------------------------------------------------------1.00--------------------------
.........................................................................................CCAATGTACTGTGCAAGCCC................................................................................................................................................................................................................................................................................................... 2011.001.001.00---------------------------------------------------------------------------------------------------
.......................................................................................................................GTCGAATACAAAATAGAA....................................................................................................................................................................................................................................................................... 1811.001.00-----------1.00----------------------------------------------------------------------------------------
...................................................................................................................AATACAAAATAGAACCCG........................................................................................................................................................................................................................................................................... 1811.001.00--1.00-------------------------------------------------------------------------------------------------
...............................................................................TGTACTGTGCAAGCCCAGGCGAGTGA....................................................................................................................................................................................................................................................................................................... 2611.001.00-----------1.00----------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................ACGGATATGGACAGCGCACGAA....................................................................................... 2211.001.00----------------------------------------------------------------------1.00-----------------------------
........................................................................................................................................................................................................................................................................................................GACGGATATGGACAGCGC...................................................................................... 1811.001.00-----------------------------------------1.00----------------------------------------------------------
..................................................................GAGTGAGCTGGGAGAAGGG........................................................................................................................................................................................................................................................................................................................... 1911.001.00----------------------------------1.00-----------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................CGGAGCTGGTTGACAGGGCTGC................. 2211.001.00-------------------------------------------------------------1.00--------------------------------------
..............................................................AGCTGGGAGAAGGGGGGC................................................................................................................................................................................................................................................................................................................................ 1830.330.33---------------------------------------0.33------------------------------------------------------------