ID: uc003qrz.2_intron_6_0_chr6_159464688_r
GENE: (3)
chr6:159464638-159465059-


(3)
B-CELL 		(1)
BRAIN 		(12)
BREAST 		(9)
CELL-LINE 		(7)
CERVIX 		(6)
HEART 		(9)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
XRN.ip

Sense strand
AAACACTAAACGCCAATAATATGGAGACACTAATCGAATGTCAATCAGAGGTAAGAAAGCAATTTTTAAGACTTTTTATCTGTACTGTGAGAAGGTGGAAAACTTTGTTTTAATTGAATATTATTTGGGTTGAATAGTAATTATAAGAGTAGTAAACTAACATCACACATGTAGTAAATTAAGCACATTAATTAGGATCTTATATGATGACAATCAAGACCTTAATATTGCTTCTAGAAGCTAGAAAAAACATCAATGCACTCTACTGACTTCATTTTTAATATGAATAAAATGCTGTATGTGTGTTTTGTGGGGAAAGACTCGATAGGTTTCTTCAGTCACTATATTTAACTGAAATAAAAATGTTTTTAGGGTGATATCAAGGAACATCCCCTGTTGGCATCATGTGAGAGTGAAGACAG
.......................................................(((((((((((((...((((((((.......)))))))).))))))...)))))))...(((.((((((((.....)))))))).))).......................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150..............................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR040015(GSM532900)
G623T. (cervix)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		GSM532876(GSM532876)
G547T. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR343335SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
...................................................................AAGACTTTTTATCTGACCA................................................................................................................................................................................................................................................................................................................................................1954.000.0030.005.003.002.00--1.00--2.00--1.00-------1.001.00---1.001.00-1.001.00-----------------1.001.001.00-----1.00--
...................................................................AAGACTTTTTATCTGACAA................................................................................................................................................................................................................................................................................................................................................199.000.007.001.00------------1.00-------------------------------------------
...................................................................AAGACTTTTTATCTGACC.................................................................................................................................................................................................................................................................................................................................................188.000.002.00--1.00-1.00--------------------------1.00---1.00-------1.00-----1.00-------
.............................................................................ATCTGTACTGTGAGAAGGTG.....................................................................................................................................................................................................................................................................................................................................2014.004.00--------2.00--2.00----------------------------------------------
...................................................................AAGACTTTTTATCTGATA.................................................................................................................................................................................................................................................................................................................................................182.000.002.00---------------------------------------------------------
...................................................................AAGACTTTTTATCTGATCA................................................................................................................................................................................................................................................................................................................................................192.000.001.00-1.00-------------------------------------------------------
..................................................................TAAGACTTTTTATCTGACC.................................................................................................................................................................................................................................................................................................................................................192.000.00-----1.00--------1.00-------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................AAGGAACATCCCCTGTTGGCATC..................2312.002.00-------------2.00--------------------------------------------
.......................................GTCAATCAGAGGTAAGAAAGCAATTTT....................................................................................................................................................................................................................................................................................................................................................................2711.001.00-------------------------------------1.00--------------------
......................................................................................GTGAGAAGGTGGAAAACTTTGT..........................................................................................................................................................................................................................................................................................................................2211.001.00-------------------------------1.00--------------------------
.......................................................................................................................................................................................................................................................................................................................GGGGAAAGACTCGATAGGTTTA.........................................................................................221.000.00----1.00-----------------------------------------------------
..................................................................TAAGACTTTTTATCTGAGC.................................................................................................................................................................................................................................................................................................................................................191.000.00----------------------1.00-----------------------------------
...................................................................AAGACTTTTTATCTGAAC.................................................................................................................................................................................................................................................................................................................................................181.000.00------------------------------1.00---------------------------
......................................TGTCAATCAGAGGTAAGAAAGCA.........................................................................................................................................................................................................................................................................................................................................................................2311.001.00--------------------------------------1.00-------------------
.....................................................................................TGTGAGAAGGTGGAAAACTTTGTT.........................................................................................................................................................................................................................................................................................................................2411.001.00----1.00-----------------------------------------------------
.................................................................................GTACTGTGAGAAGGTGGAAA.................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------------1.00----------------------------------
.......................................................AAAGCAATTTTTAAGGTA.............................................................................................................................................................................................................................................................................................................................................................181.000.00-------1.00--------------------------------------------------
...................................................................AAGACTTTTTATCTGAACA................................................................................................................................................................................................................................................................................................................................................191.000.001.00---------------------------------------------------------
..............................................AGAGGTAAGAAAGCAATTTTA...................................................................................................................................................................................................................................................................................................................................................................211.000.00-----------------------------------------------------1.00----
...................................................................AAGACTTTTTATCTGCAA.................................................................................................................................................................................................................................................................................................................................................181.000.00-----1.00----------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................AAGGAACATCCCCTGTTGGCATCATG...............2611.001.00--1.00-------------------------------------------------------
............................................................AATTTTTAAGACTTTAG.........................................................................................................................................................................................................................................................................................................................................................171.000.00-----------------------------------1.00----------------------
......................................................................................GTGAGAAGGTGGAAAACTTTGTTTTA......................................................................................................................................................................................................................................................................................................................2611.001.00----1.00-----------------------------------------------------
................................................................................................................................................................................................................GACAATCAAGACCTTTCTC...................................................................................................................................................................................................191.000.00---------------------------------------------------1.00------
...................................................................AAGACTTTTTATCTGATC.................................................................................................................................................................................................................................................................................................................................................181.000.00-1.00--------------------------------------------------------
...................................................................AAGACTTTTTATCTGAAGA................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------------------------------------1.00---
...................................GAATGTCAATCAGAGGTAAGAAAG...........................................................................................................................................................................................................................................................................................................................................................................2411.001.00---------------------------1.00------------------------------
...................................................................AAGACTTTTTATCTGACAG................................................................................................................................................................................................................................................................................................................................................191.000.00-1.00--------------------------------------------------------
...................................................................AAGACTTTTTATCTGACTA................................................................................................................................................................................................................................................................................................................................................191.000.00------1.00---------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................CCCTGTTGGCATCATGTGAGAGTGAAGACA.3011.001.00------------------------1.00---------------------------------
...................................................................AAGACTTTTTATCTGACCT................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------------------------1.00----------------
....................................AATGTCAATCAGAGGGTG................................................................................................................................................................................................................................................................................................................................................................................181.000.00--1.00-------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAGAGTGAAGACA.1640.250.25---------------0.25------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................CACTATATTTAACTG....................................................................1580.120.12--------------------------------------------------------0.12-
...................................................................................................................................................................................................................................................................................................................................................................................................CATCCCCTGTTGGCA....................1580.120.12----------------0.12-----------------------------------------
.............................................................................................................................................................................................................................................................................................AATAAAATGCTGTATG.........................................................................................................................1680.120.12---------------------------------------------------------0.12

Antisense strand
AAACACTAAACGCCAATAATATGGAGACACTAATCGAATGTCAATCAGAGGTAAGAAAGCAATTTTTAAGACTTTTTATCTGTACTGTGAGAAGGTGGAAAACTTTGTTTTAATTGAATATTATTTGGGTTGAATAGTAATTATAAGAGTAGTAAACTAACATCACACATGTAGTAAATTAAGCACATTAATTAGGATCTTATATGATGACAATCAAGACCTTAATATTGCTTCTAGAAGCTAGAAAAAACATCAATGCACTCTACTGACTTCATTTTTAATATGAATAAAATGCTGTATGTGTGTTTTGTGGGGAAAGACTCGATAGGTTTCTTCAGTCACTATATTTAACTGAAATAAAAATGTTTTTAGGGTGATATCAAGGAACATCCCCTGTTGGCATCATGTGAGAGTGAAGACAG
.......................................................(((((((((((((...((((((((.......)))))))).))))))...)))))))...(((.((((((((.....)))))))).))).......................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150..............................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR040015(GSM532900)
G623T. (cervix)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		GSM532876(GSM532876)
G547T. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR343335SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
...................................................................................................................................................................................................................................................................................................................................TAGTGACTGAAGAAACCTATC.............................................................................. 2111.001.00----------------------------------1.00-----------------------
.................................................................................................................................................................ATCACACATGTAGTAACTGT................................................................................................................................................................................................................................................. 201.000.00---------------------------------------------1.00------------
..........................................................................................................................................................................................................................................................................................................................................AAATATAGTGACTGAAGAA......................................................................... 1911.001.00----------------------------------------------1.00-----------
.............................................................................................................................................................................................................................................................AAATGAAGTCAGTAGAGTGCATTG................................................................................................................................................. 2411.001.00-------------------1.00--------------------------------------
................................................................................................................................................................................................................................................................................................................................................................TGAAATAAAAATGTTTTAAT.................................................. 201.000.00-------1.00--------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................CACATGATGCCAACAGGGGATG............. 2211.001.00------------------------------------------1.00---------------
.........................................................................................................................................................................................................................................................................................................................................AGTTAAATATAGTGACTGAAGAAA..................................................................... 2411.001.00----------------------------------------1.00-----------------
.....................................................................................................................................................................................................................................................................................................................................ATAGTGACTGAAGAAACCTA............................................................................. 2011.001.00----------------------------------------------------1.00-----
.........................................................................................................................................................................................................................................................................................................................................ATATAGTGACTGAAGAAA........................................................................... 1811.001.00-----------------1.00----------------------------------------
......................................................................................................................................................................................................................................................................................................................................AGGTTTCTTCAGTCACTATATTG......................................................................... 231.000.00----------------1.00-----------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAACAGGGGATGTT................... 1811.001.00------------1.00---------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................ACATGATGCCAACAGGGGA.............. 1911.001.00----------1.00-----------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................CTCTCACATGATGCCAACAGGG......... 2211.001.00---------------------------------1.00------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................CATGTGAGAGTGAAGACTACG 211.000.00------------------1.00---------------------------------------
.......................................GTCAATCAGAGGTAAGCTC............................................................................................................................................................................................................................................................................................................................................................................ 191.000.00------1.00---------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................AGTGACTGAAGAAACCTATCGAGT............................................................................... 2411.001.00---------------------------------------1.00------------------
...................................................................................................................................................................................................................................................................................................................TTGTGGGGAAAGACTCAA................................................................................................. 181.000.00-------------------------------------------1.00--------------
.........................................................................................................................................................................................................................................................................................................................................AAATATAGTGACTGAAGAAA......................................................................... 2011.001.00-1.00--------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................ATGATGCCAACAGGGGATG................ 1911.001.00---------------1.00------------------------------------------
..........................................................................................................................................................................................................................................................................................................TTTCCCCACAAAACACACAT........................................................................................................ 2011.001.00----------1.00-----------------------------------------------
.............................................................................................................................................................................................................................................................................................CATACAGCATTTTATT......................................................................................................................... 1680.120.12-------0.12--------------------------------------------------