ID: uc003qmo.1_intron_1_0_chr6_149833439_r.3p
GENE: (11)
chr6:149833389-149833638-


(2)
AGO2.ip
(11)
B-CELL
(3)
BRAIN
(16)
BREAST
(45)
CELL-LINE
(2)
FIBROBLAST
(6)
HEART
(1)
HELA
(3)
LIVER
(1)
OTHER
(1)
RRP40.ip
(41)
SKIN
(2)
UTERUS
(1)
XRN.ip

Sense strand
AGGATTAGGATTCTTTCCATTTCTCCTGACTATATAATGAAAGAAAATGTTAGTTTTGTTTTAGAAATGTACTATATTCTTTTGAGATGCTTTTTGCTTTAGTTACTTTTAGCCTTATGACCTCCTTTGTTTACCAGATCTTAAGTTTTGATGTCTTACCAGTATTATTTATCACATTTATCCTTAACTAACTACTGCAGTACAAAATACGATCTTATATTAGATGAGCAGGCCGAAGACTCAAAATCAA
..............................................................................................(((..((((((....................((((.....))))..(((((....(((((..((...........))..)))))....))))).))))))..)))...................................................
.............................................................................................94........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR037938(GSM510476)
293Red. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR029129(GSM416758)
SW480. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR343335SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR029126(GSM416755)
143B. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359190(GSM359190)
HepG2_3pM_4. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAGA.................................................221247.0072.00120.0014.0019.0011.004.004.006.006.00--1.002.001.001.002.001.001.004.001.001.004.002.00-1.001.001.001.001.001.001.001.001.002.00---3.00---3.00-----1.001.00--1.00-1.001.00--1.00--------1.00---1.00------1.00---1.001.001.00--1.00-1.00----------1.00-1.00---1.001.00-1.001.00-1.00-1.00------1.00---------1.00-1.00----
..................................................................................................................................................................................TATCCTTAACTAACTACTGCAGA.................................................23199.0038.0060.00--15.008.00--1.00----------1.00---------------1.00----1.00-----2.00-----------------1.00-------1.00-------1.00-----------1.00--1.00-1.00--1.00--------------------1.00-----------1.001.00--
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAG..................................................21172.0072.0022.0012.00-8.004.00--2.00--1.00--2.002.00---1.00--1.00-----------1.001.00----2.00-1.00----------1.001.00---------1.00------1.001.001.00----------1.00--1.00-------------------1.00----------1.001.00-----1.00-----------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAGAA................................................23163.0072.0039.004.00--------2.00-1.00--1.00---------1.00-2.00-2.00-1.00-2.00--------1.00---1.00--1.00-----------1.001.00-------1.00------------------------1.00------------------------------1.00---------
..................................................................................................................................................................................TATCCTTAACTAACTACTGCAG..................................................22138.0038.006.002.00--1.00-2.00----2.00-1.00--1.00--2.00-1.00--1.00-------1.00-1.00------1.001.00-------1.00---2.00-1.00---2.00----1.00---------1.00-------------1.00---1.00--------1.00-----------1.00------1.00--------1.00---1.00-
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAGT.................................................22129.0029.00-4.0016.00-2.005.00--------------------1.00---------------------------------------------1.00---------------------------------------------------------------
..................................................................................................................................................................................TATCCTTAACTAACTACTGCAGAA................................................24127.0038.0017.00---3.00--1.00----2.00------------------------------2.00-------------1.00----------------------------------1.00-------------------------------------------
......................................................................................................................................................................................CTTAACTAACTACTGCAGA.................................................1912.000.0011.00-----1.00---------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAGAATA..............................................2519.0072.00--------4.005.00------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAGTA................................................2316.006.00----------------------2.00--1.00-------------------------1.00-------------------------------------------------------------1.00-------------1.00--------
..................................................................................................................................................................................TATCCTTAACTAACTACTGCAGTATT..............................................266.000.00-----6.00----------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAGTAA...............................................2415.006.00----3.00-----2.00-----------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAGAAA...............................................2415.0072.004.00------------------------------------------------------1.00--------------------------------------------------------------------------------
..................................................................................................................................................................................TATCCTTAACTAACTACTGCAGT.................................................2314.004.00------------1.00---------1.00---1.00--------------------------------------------------1.00----------------------------------------------------------
.............................................................................................................................................................................ACATTTATCCTTAACTAACTACTGCAGTA................................................2913.003.00--------2.001.00------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTATCCTTAACTAACTACTGCAGA.................................................2413.001.003.00---------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAGAAT...............................................2412.0072.00-------------------1.00-----------------------------------1.00--------------------------------------------------------------------------------
..............................................................................................................................................................................CATTTATCCTTAACTAACTACTGCAG..................................................2612.002.00-------------------------------------------------1.00-------------------1.00------------------------------------------------------------------
..................................................................................................................................................................................TATCCTTAACTAACTACT......................................................1812.002.00------------------------------------------------2.00---------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................GATGAGCAGGCCGAAGACTCAAA.....2312.002.00--------------------------------------1.00----------------------------------1.00--------------------------------------------------------------
................................................................................................................CCTTATGACCTCCTTTGTTTACCAGATCT.............................................................................................................2912.002.00-------------------------------------------------------------------2.00--------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAGTATA..............................................2512.006.00--------------------------------------------------------------------2.00-------------------------------------------------------------------
...............................................................................................................................................................................ATTTATCCTTAACTAACTACTGCAG..................................................2512.002.00----------------2.00-----------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................ATTTATCCTTAACTAACTACTGCAGA.................................................2612.002.001.00------------------------------------------------------------1.00--------------------------------------------------------------------------
..................................................................................................................................................................................TATCCTTAACTAACTACTGCAGTAC...............................................2512.002.00----------------------------2.00-----------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................AGCAGGCCGAAGACTCAAAACC..2212.001.00-----------------------------------2.00----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAGAAAA..............................................2512.0072.001.00-----------------------1.00---------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................AGCAGGCCGAAGACTCAA......1812.002.00---------------1.00-----------------------------------------------------------------------------------------------1.00------------------------
.................................................................................................................................................................................................................................GAGCAGGCCGAAGACTCAAAATC..2312.002.00----------------------------------------------------------2.00-----------------------------------------------------------------------------
.................................................................................................................................................................................................................................GAGCAGGCCGAAGACTCAAA.....2011.001.00----------------------------------------------------------------------------------------1.00-----------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAGTAAA..............................................2511.006.00--------------------------------------------1.00-------------------------------------------------------------------------------------------
....................................................................................AGATGCTTTTTGCTTTAGTTACTTTTAG..........................................................................................................................................2811.001.00-----------------------------------------------------------1.00----------------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAGTAT...............................................2411.006.00--------------------------------------------------------------------------------------------------------------------------1.00-------------
.................................................................................................................................................................................TTATCCTTAACTAACTACTGCAG..................................................2311.001.00--------------------------------------------------------------------------------------------------------------------1.00-------------------
.........................................................................................................................................................................................................................TATTAGATGAGCAGGCCGAAGACCC........251.000.00-----------------------------------1.00----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGTAGA.................................................221.000.001.00---------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAAGA................................................231.000.00--------------------------------------------------------------1.00-------------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAGC.................................................2211.0072.00--1.00-------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................CTTAACTAACTACTGCAGT.................................................1911.001.00---------------------------------------------------1.00------------------------------------------------------------------------------------
............................................................................................................................................................................CACATTTATCCTTAACTAACTACTGCAG..................................................2811.001.00-----------1.00----------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCCGA.................................................221.000.00---------------1.00------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................AGATGAGCAGGCCGAAGACT.........2011.001.00------------------------------------------------------------------------------1.00---------------------------------------------------------
..................................................................................................................................................................................TATCCTTAACTAACTACTGCAGCAA...............................................2511.0038.00------------------------------------------------------------------------------------1.00---------------------------------------------------
.................................................................................................................................................................................................................................GAGCAGGCCGAAGACATTG......191.000.00-------------------------------------------------------------------------------------------------------1.00--------------------------------
...............................................................................................................................................................................ATTTATCCTTAACTACTCA........................................................191.000.00--------------------------------------------------------------------------1.00-------------------------------------------------------------
......................................................................................................................................................................................................................TTATATTAGATGAGCAGGCCGAAGACT.........2711.001.00---------------------------------------------------------------------------------------------------------------------------1.00------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAGATA...............................................2411.0072.00---------------------------------------------------------1.00------------------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCATTAT...............................................241.000.00--------------------------------------1.00-------------------------------------------------------------------------------------------------
..................................................................................................TTAGTTACTTTTAGCCTTATGACC................................................................................................................................2411.001.00-------------------------------------------------------------------------------------------------1.00--------------------------------------
........................................................................................................ACTTTTAGCCTTATGACCTCCTG...........................................................................................................................231.000.00----------------------------------------------------------------1.00-----------------------------------------------------------------------
.......................................................................................................................................................................................................................TATATTAGATGAGCAGGCCGAAGA...........2411.001.001.00---------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................GATGAGCAGGCCGAAGACTAAAA.....231.000.00-------------------------------------------------------------------------------------------------------------1.00--------------------------
..................................................................................................................................................................................................................................AGCAGGCCGAAGACTCAAAA....2011.001.00------------------------------------------------------------------1.00---------------------------------------------------------------------
......................................................................................................................................................................................CTTAACTAACTACTGCAGTACA..............................................2211.001.00--------------------------------------------------------------------------------------------------------------------------------1.00-------
......................................................................................................................................................................................CTTAACTAACTACTGCAGAAT...............................................211.000.00--------------------------------------------1.00-------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GAGCAGGCCGAAGACTCAAAAT...2211.001.00-------------------------------1.00--------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAGTATT..............................................2511.006.00---1.00------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................AGATGAGCAGGCCGAAGAC..........1911.001.00-----------------------1.00----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................ATCTTATATTAGATGAGCAGGCCGAAGA...........2811.001.00-----------------------1.00----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAGACTT..............................................2511.0072.00-----------------------------------------------------------------------------------------------------------------------------1.00----------
......................................................................................................................................................................................CTTAACTAACTACTGCCGA.................................................191.000.00-1.00--------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGAGA..................................................211.000.001.00---------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACTGCAGTTT...............................................2411.0029.00-------------------------------------------------------------------------------------------------------------------1.00--------------------
..................................................................................................................................................................................TATCCTTAACTAACTACTGCAGAAA...............................................2511.0038.00------1.00---------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................AGGCCGAAGACTCAAAA....1711.001.00-----------------------------------------------1.00----------------------------------------------------------------------------------------
....................................................................................................................................................................................TCCTTAACTAACTACTGCAGA.................................................211.000.001.00---------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................TGAGCAGGCCGAAGACTCAAA.....2111.001.00------------------------------------------------------------------1.00---------------------------------------------------------------------
..............................................................................................................................................................................CATTTATCCTTAACTAACTACTGCAGA.................................................2711.002.00-1.00--------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................CATTTATCCTTAACTAACTACTGCAT..................................................261.000.00-------------------------------------------------------------------------1.00--------------------------------------------------------------
..................................................................................................................................................................................TATCCTTAACTAACTACTGCATA.................................................231.000.00--------------------------------------1.00-------------------------------------------------------------------------------------------------
....................................................................................AGATGCTTTTTGCTTTAGTTACTTTTAGCC........................................................................................................................................3011.001.00-----------------------------------------------------------1.00----------------------------------------------------------------------------
......................................................................................................................................................................................CTTAACTAACTACTGCAGAA................................................201.000.00----------------------1.00-----------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................AGGCCGAAGACTCAA......1511.001.00------------------1.00---------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TATCCTTAACTAACTACTGC....................................................2011.001.001.00---------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ATCCTTAACTAACTACT......................................................1720.500.50---------------------------------------------------------------------------------------------------------------------------------------0.50
...................................................................................................................................................................................ATCCTTAACTAACTACTACAG..................................................2120.500.50---0.50------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................TTAACTAACTACTGCAG..................................................1730.330.33-------------0.33--------------------------------------------------------------------------------------------------------------------------

Antisense strand
AGGATTAGGATTCTTTCCATTTCTCCTGACTATATAATGAAAGAAAATGTTAGTTTTGTTTTAGAAATGTACTATATTCTTTTGAGATGCTTTTTGCTTTAGTTACTTTTAGCCTTATGACCTCCTTTGTTTACCAGATCTTAAGTTTTGATGTCTTACCAGTATTATTTATCACATTTATCCTTAACTAACTACTGCAGTACAAAATACGATCTTATATTAGATGAGCAGGCCGAAGACTCAAAATCAA
..............................................................................................(((..((((((....................((((.....))))..(((((....(((((..((...........))..)))))....))))).))))))..)))...................................................
.............................................................................................94........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR037938(GSM510476)
293Red. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR029129(GSM416758)
SW480. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR343335SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR029126(GSM416755)
143B. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359190(GSM359190)
HepG2_3pM_4. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
.........................................................................................................................................................TCTTACCAGTATTATAAA............................................................................... 183.000.00-------------------------------------3.00--------------------------------------------------------------------------------------------------
....................TTCTCCTGACTATATCAAA................................................................................................................................................................................................................... 192.000.00------------------------------2.00---------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................ACTAACTACTGCAGTACCAG............................................ 201.000.00-----------------------------------------------------------------------------------------------------1.00----------------------------------
.........................................AGAAAATGTTAGTTTTCATG............................................................................................................................................................................................. 201.000.00----------------------------------------------------------------1.00-----------------------------------------------------------------------
.................................ATAATGAAAGAAAATGTCAGT.................................................................................................................................................................................................... 211.000.00------------------------------------------------------------------------------------------1.00---------------------------------------------