ID: uc003qmm.2_intron_2_0_chr6_149773859_r.5p
GENE: (4)
chr6:149777602-149777851-


(3)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(8)
BREAST
(17)
CELL-LINE
(18)
CERVIX
(1)
HEART
(3)
LIVER
(1)
OTHER
(8)
SKIN
(1)
TESTES

Sense strand
AAGTGGTTCATCGAGCAGAGGCTGCTCATGTTCTCCTTCGTCAACGACCGGTAGGTCCGGCTGGGGTCCTGACACCCTGGGGGGCGGCGGGGCGGGGGGCCGGGGTCGAGGCAGTGGCCACGCCTGCTACCAGGTGGAGGAGCTTGGGGTCACCCGGTCACCCAGCCCCTCAGACAGAGCTCCCCCAGGTCCGCATTCTCGGCGGGCACGTCCCCAATAGGTGGGCTGCTTTGCTCTGACCTTGCTGTTC
.....................................................(((((..((...((((((...(((....)))...)))))))).))))).....................................................................................................................................................
..................................................51.................................................102..................................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM532874(GSM532874)
G699T. (cervix)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
GSM532877(GSM532877)
G691N. (cervix)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
GSM532876(GSM532876)
G547T. (cervix)
SRR189782GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040007(GSM532892)
G601T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
GSM956925PAZD5SRR040006(GSM532891)
G601N. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784TAX577580(Rovira)
total RNA. (breast)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189786TAX577589(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR040019(GSM532904)
G701T. (cervix)
SRR343336SRR343337SRR040015(GSM532900)
G623T. (cervix)
GSM532890(GSM532890)
G576T. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM532886(GSM532886)
G850T. (cervix)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR040031(GSM532916)
G013T. (cervix)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR040008(GSM532893)
G727N. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
.................................................................................GGGCGGCGGGGCGGGG.........................................................................................................................................................160239.00239.00211.00-16.00-6.00--1.00---1.00---2.00--------1.00------------1.00----------------------------
.................................................................................GGGCGGCGGGGCGGGGG........................................................................................................................................................1706.006.004.00----------2.00------------------------------------------------------
..............................................................................GGGGGGCGGCGGGGCGA...........................................................................................................................................................176.000.00---4.00-----2.00--------------------------------------------------------
.................................................................................GGGCGGCGGGGCGGGGGG.......................................................................................................................................................1874.864.86-0.29-1.14-0.29---1.14--0.710.14---0.14------------------------------0.430.29-0.14----------0.14---
................................................................................GGGGCGGCGGGGCGGGGTT.......................................................................................................................................................1904.001.00--------4.00---------------------------------------------------------
................................CTCCTTCGTCAACGACCG........................................................................................................................................................................................................1812.002.00---------------------1.00-------1.00------------------------------------
..............................................................................GGGGGGCGGCGGGGCGAGC.........................................................................................................................................................192.000.00---1.00------------------------------------1.00-------------------------
..............................................................................GGGGGGCGGCGGGGCGGGG.........................................................................................................................................................1951.201.20--0.200.40-------------------------------------------------0.200.20---0.20-------
...............................................................................GGGGGCGGCGGGGCGG...........................................................................................................................................................1601.001.001.00-----------------------------------------------------------------
..................................................GTAGGTCCGGCTGGGGAG......................................................................................................................................................................................181.000.00----------------------------1.00-------------------------------------
.................................................................................................................GTGGCCACGCCTGCTGCC.......................................................................................................................181.000.00------------1.00-----------------------------------------------------
...........................................................................................................................................................................AGACAGAGCTCCCCCATCT............................................................191.000.00----------1.00-------------------------------------------------------
...............................................................................GGGGGCGGCGGGGCG............................................................................................................................................................1501.001.00-------1.00----------------------------------------------------------
..............................................................................GGGGGGCGGCGGGGCGAG..........................................................................................................................................................181.000.00---------------------------------------1.00--------------------------
...................................................................................GCGGCGGGGCGGGGGGGGCT...................................................................................................................................................2001.001.00------------------1.00-----------------------------------------------
............................................................................CTGGGGGGCGGCGGGGCGGGG.........................................................................................................................................................2111.001.00-----------------1.00------------------------------------------------
...................................................................................GCGGCGGGGCGGGGGGGT.....................................................................................................................................................1801.001.00----------------1.00-------------------------------------------------
...............................................................................GGGGGCGGCGGGGCGGGCA........................................................................................................................................................191.000.00----------------------1.00-------------------------------------------
...............................................................................................................CAGTGGCCACGCCTGTAGA........................................................................................................................191.000.00----------------------------------1.00-------------------------------
................................CTCCTTCGTCAACGAG..........................................................................................................................................................................................................161.000.00-------------------------1.00----------------------------------------
................................CTCCTTCGTCAACGACCT........................................................................................................................................................................................................181.000.00--------------------------------------1.00---------------------------
...................................................................................GCGGCGGGGCGGGGG........................................................................................................................................................1501.001.00-------1.00----------------------------------------------------------
....................................................................................CGGCGGGGCGGGGGGCCGCCGG................................................................................................................................................221.000.00-1.00----------------------------------------------------------------
................................................................................GGGGCGGCGGGGCGGGG.........................................................................................................................................................1701.001.00----1.00-------------------------------------------------------------
..............................................................................GGGGGGCGGCGGGGCGAA..........................................................................................................................................................181.000.00---1.00--------------------------------------------------------------
............................................................................................CGGGGGGCCGGGGTCGGAT...........................................................................................................................................191.000.00-----------------------------------------1.00------------------------
...............................................................................GGGGGCGGCGGGGCGAGC.........................................................................................................................................................1801.001.00--------------1.00---------------------------------------------------
...................................................................................GCGGCGGGGCGGGGGGGAA....................................................................................................................................................1901.001.00-------------------------------1.00----------------------------------
..................................................................................GGCGGCGGGGCGGGGGGGT.....................................................................................................................................................191.000.00-------1.00----------------------------------------------------------
...............CAGAGGCTGCTCATGTTATGA......................................................................................................................................................................................................................211.000.00----------1.00-------------------------------------------------------
................................................................................................GGGCCGGGGTCGAGGCGGCC......................................................................................................................................201.000.00---------------------------------1.00--------------------------------
..................................................................................GGCGGCGGGGCGGGGG........................................................................................................................................................1601.001.00-------1.00----------------------------------------------------------
..............................................................................GGGGGGCGGCGGGGCGAGG.........................................................................................................................................................191.000.00---1.00--------------------------------------------------------------
...................................................................................GCGGCGGGGCGGGGGGGC.....................................................................................................................................................1801.001.00-1.00----------------------------------------------------------------
......................................................................................GCGGGGCGGGGGGCCGGG..................................................................................................................................................1811.001.00------1.00-----------------------------------------------------------
..............................................................................GGGGGGCGGCGGGGCGGGGGC.......................................................................................................................................................211.000.00-------------1.00----------------------------------------------------
...................................................................................GCGGCGGGGCGGGGGG.......................................................................................................................................................1601.001.00------------------------------------1.00-----------------------------
...........................................................................................................................................................................AGACAGAGCTCCCCCCATC............................................................191.000.00----------1.00-------------------------------------------------------
.........................................................................................GGGCGGGGGGCCGGGCGAG..............................................................................................................................................191.000.00---1.00--------------------------------------------------------------
..............................................................................GGGGGGCGGCGGGGCGACC.........................................................................................................................................................191.000.00---1.00--------------------------------------------------------------
.............................................................................................GGGGGGCCGGGGTCGCACG..........................................................................................................................................191.000.00-------------1.00----------------------------------------------------
................................................................................GGGGCGGCGGGGCGGTGGA.......................................................................................................................................................191.000.00---------1.00--------------------------------------------------------
......................................................................................GCGGGGCGGGGGGCCGCGC.................................................................................................................................................191.000.00--------------1.00---------------------------------------------------
................................................................................GGGGCGGCGGGGCGGTCGG.......................................................................................................................................................191.000.00--------------------1.00---------------------------------------------
................................................................................GGGGCGGCGGGGCGGGGGG.......................................................................................................................................................1950.800.80---0.40----------------------------------------------------0.20--0.20------
............................................................................CTGGGGGGCGGCGGGGCG............................................................................................................................................................1830.670.67------------0.67-----------------------------------------------------
..............................................................................GGGGGGCGGCGGGGCGGG..........................................................................................................................................................1880.620.62---0.25---------------------------------------------0.12-------------0.120.12-
..............................................................................GGGGGGCGGCGGGGCGG...........................................................................................................................................................1790.560.56---0.11---0.11-0.11-----------------------------------------0.11-------------0.11
.................................................................................GGGCGGCGGGGCGGGGGGC......................................................................................................................................................1920.500.50---------------------------------------------0.50--------------------
.........................................................................ACCCTGGGGGGCGGC..................................................................................................................................................................1560.330.33--------------------------------------------------0.33---------------
.......................................................................................CGGGGCGGGGGGCCGGG..................................................................................................................................................1740.250.25----------------------------------------------------0.25-------------
..............................................................................GGGGGGCGGCGGGGCGGGGCGG......................................................................................................................................................2250.201.20-------------------------------------------------------0.20----------
..............................................................................GGGGGGCGGCGGGGCGGGGC........................................................................................................................................................2050.201.20-0.20----------------------------------------------------------------
................................................................................GGGGCGGCGGGGCGGGGGGGCGG...................................................................................................................................................2350.200.80---------------------------------------------------------0.20--------
..............................................................................GGGGGGCGGCGGGGCGGGGCG.......................................................................................................................................................2150.201.20-----0.20------------------------------------------------------------
.................................................................................GGGCGGCGGGGCGGGGGGGCGG...................................................................................................................................................2270.144.86---0.14--------------------------------------------------------------
.................................................................................GGGCGGCGGGGCGGGGGGATT....................................................................................................................................................2170.144.86-------------------------------------------------------------0.14----
.................................................................................GGGCGGCGGGGCGGGGGGGTC....................................................................................................................................................2170.144.86---0.14--------------------------------------------------------------
.................................................................................GGGCGGCGGGGCGGGGGGGGT....................................................................................................................................................2170.144.86---------0.14--------------------------------------------------------
..............................................................................GGGGGGCGGCGGGGCGGGCGG.......................................................................................................................................................2180.120.62---0.12--------------------------------------------------------------
...............................................................................GGGGGCGGCGGGGCGGGGG........................................................................................................................................................1980.120.12---------------------------------------------0.12--------------------
..............................................................................GGGGGGCGGCGGGGCGGT..........................................................................................................................................................1890.110.56---0.11--------------------------------------------------------------

Antisense strand
AAGTGGTTCATCGAGCAGAGGCTGCTCATGTTCTCCTTCGTCAACGACCGGTAGGTCCGGCTGGGGTCCTGACACCCTGGGGGGCGGCGGGGCGGGGGGCCGGGGTCGAGGCAGTGGCCACGCCTGCTACCAGGTGGAGGAGCTTGGGGTCACCCGGTCACCCAGCCCCTCAGACAGAGCTCCCCCAGGTCCGCATTCTCGGCGGGCACGTCCCCAATAGGTGGGCTGCTTTGCTCTGACCTTGCTGTTC
.....................................................(((((..((...((((((...(((....)))...)))))))).))))).....................................................................................................................................................
..................................................51.................................................102..................................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM532874(GSM532874)
G699T. (cervix)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
GSM532877(GSM532877)
G691N. (cervix)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
GSM532876(GSM532876)
G547T. (cervix)
SRR189782GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040007(GSM532892)
G601T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
GSM956925PAZD5SRR040006(GSM532891)
G601N. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784TAX577580(Rovira)
total RNA. (breast)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189786TAX577589(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR040019(GSM532904)
G701T. (cervix)
SRR343336SRR343337SRR040015(GSM532900)
G623T. (cervix)
GSM532890(GSM532890)
G576T. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM532886(GSM532886)
G850T. (cervix)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR040031(GSM532916)
G013T. (cervix)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR040008(GSM532893)
G727N. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
..................................................................................................................................................................................GCTCCCCCAGGTCCGGC....................................................... 1714.000.00-12.00---2.00------------------------------------------------------------
.........................................................................................GGGCGGGGGGCCGGGGTCCC............................................................................................................................................. 205.000.00------3.00---------1.00----------1.00--------------------------------------
..................................................................................GGCGGCGGGGCGGGGGGGGC.................................................................................................................................................... 2004.000.00-2.00---2.00------------------------------------------------------------
..................................................................................................................................................................................GCTCCCCCAGGTCCGGG....................................................... 173.000.00-2.00---1.00------------------------------------------------------------
..................................................................................................................................................................................GCTCCCCCAGGTCCGGT....................................................... 171.000.00-1.00----------------------------------------------------------------
............................................................................................................................................................................................................................GTGGGCTGCTTTGCTGGCT........... 191.000.00--------------------------------1.00---------------------------------
............................................................................................................................................................GTCACCCAGCCCCTCTCTG........................................................................... 191.000.00-------------------------------------------1.00----------------------
........CATCGAGCAGAGGCTGG................................................................................................................................................................................................................................. 171.000.00------------------------------------------1.00-----------------------
.......................................................................................................................................................ACCCGGTCACCCAGCCTT................................................................................. 181.000.00-----------------------------------1.00------------------------------
..................................................................................................................................................................................GCTCCCCCAGGTCCGCGC...................................................... 181.000.00-1.00----------------------------------------------------------------
.......................................................................................CGGGGCGGGGGGCCGGGGGT............................................................................................................................................... 2041.000.00-1.00----------------------------------------------------------------
...........................................................................................GCGGGGGGCCGGGGTGC.............................................................................................................................................. 171.000.00--------------------------------------------1.00---------------------
...........................................................................................GCGGGGGGCCGGGGTACCC............................................................................................................................................ 191.000.00--------------------------1.00---------------------------------------
........................................................................................................................................................................................................................ATAGGTGGGCTGCTTATCT............... 191.000.00-------------------1.00----------------------------------------------
...................................................................................................................................CCCAAGCTCCTCCACCT...................................................................................................... 1721.001.00----------------------------------------------0.500.50------------------
.........................................................................................GGGCGGGGGGCCGGGGTCCA............................................................................................................................................. 201.000.00------1.00-----------------------------------------------------------
.........................................................................................GGGCGGGGGGCCGGGGTACC............................................................................................................................................. 201.000.00------1.00-----------------------------------------------------------
......................................................................................GCGGGGCGGGGGGCCGGGGTG............................................................................................................................................... 211.000.00------------------------------1.00-----------------------------------
.......................................................................................................................................................................CCTCAGACAGAGCTCCGA................................................................. 181.000.00--------1.00---------------------------------------------------------
..................................................................................GGCGGCGGGGCGGGGGGCAG.................................................................................................................................................... 2001.000.00-----1.00------------------------------------------------------------
......................................................................................GCGGGGCGGGGGGCCGGTC................................................................................................................................................. 191.000.00-----------------------1.00------------------------------------------
..............................................................................CCCCCCGCCCCGCCGCCCCCC....................................................................................................................................................... 2130.330.33-0.33----------------------------------------------------------------
..............................................................................CCCCCGCCCCGCCGCCCCCC........................................................................................................................................................ 2040.250.25-0.25----------------------------------------------------------------
.............................................................................................................................................................CTGAGGGGCTGGGTGA............................................................................. 1660.170.17------------------------------------------------------------0.17-----
...............................................................................CCCCCGCCCCGCCGCCCCC........................................................................................................................................................ 1980.120.12-----0.12------------------------------------------------------------