ID: uc003qmm.2_intron_1_0_chr6_149772616_r.3p
GENE: (5)
chr6:149772566-149772815-


(5)
AGO2.ip
(1)
BRAIN
(3)
BREAST
(12)
CELL-LINE
(4)
CERVIX
(2)
HEART
(1)
LIVER
(4)
OTHER
(11)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TCCCCACCTCGGCCCCGCGCCCAGATCTTGAGGCGTTTCCAGGGCGCTGAGTCTGAGGAGTCCGCGGCGGCCTGGGGGCCTGCTTGGAGGAATCTCCACGGAGAGGCCGCGGGCCGGCACTCCCCGGATGCACCAGGAACCACCGCCCCTCCGCGCCCCCGGGCCTCACGTCGCGCCCTCTCTGCCCCCGCCCCTTTCAGGCAAGAAATGCACCTATGGCATCAAGTGCAAGTTCTACCACCCGGAGAGG
......................................................................................................((((((.((((((((......))))..((...(((..........)))..))...))))))))))...................................................................................
.............................................................................................94........................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925PAZD5GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR040021(GSM532906)
G761T_2. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR189782GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038857(GSM458540)
D20. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040025(GSM532910)
G613T. (cervix)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR343334SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
..................................................................................................CGGAGAGGCCGCGGGCCG......................................................................................................................................18138.0038.0011.0010.004.004.004.00-3.00-1.00---------1.00--------------------
..................................................................................................CGGAGAGGCCGCGGGCCGGT....................................................................................................................................20112.0010.007.002.002.00-1.00----------------------------------
..................................................................................................CGGAGAGGCCGCGGGCCGG.....................................................................................................................................19110.0010.004.003.00-1.00--1.00-------1.00------------------------
..................................................................................................CGGAGAGGCCGCGGGCC.......................................................................................................................................1716.006.003.002.00-------1.00-----------------------------
...................................................................................................GGAGAGGCCGCGGGCCG......................................................................................................................................1724.504.500.50-3.50-----0.50------------------------------
..................................................................................................CGGAGAGGCCGCGGGCCGGTC...................................................................................................................................2114.0010.00-1.001.00------------1.00---1.00-------------------
..................................................................................................CGGAGAGGCCGCGGGC........................................................................................................................................1612.002.00-1.00----------------------1.00--------------
...................................................................................................GGAGAGGCCGCGGGCCGG.....................................................................................................................................1821.501.500.50-0.50-----------------------------0.50------
................................................................................................................................................GCCCCTCCGCGCCCCCCAAA......................................................................................201.000.00---------------------------1.00-----------
..............................................................................................................................................CCGCCCCTCCGCGCCCCCCCAA......................................................................................221.000.00--------------------1.00------------------
......................AGATCTTGAGGCGTTTCTCG................................................................................................................................................................................................................201.000.00---------------------1.00-----------------
.....................................................................................................AGAGGCCGCGGGCCGTTC...................................................................................................................................181.000.00----------------------------1.00----------
.......................................................................................................................................................CGCGCCCCCGGGCCTGG..................................................................................171.000.00-------------1.00-------------------------
...................................................................................................GGAGAGGCCGCGGGCCA......................................................................................................................................171.000.00----------1.00----------------------------
.................................CGTTTCCAGGGCGCTGA........................................................................................................................................................................................................1711.001.00-----------------------1.00---------------
......CCTCGGCCCCGCGCCCT...................................................................................................................................................................................................................................171.000.00-----------------1.00---------------------
..............................................................................................................................................CCGCCCCTCCGCGCCCCCCCT.......................................................................................211.000.00--1.00------------------------------------
...........................................................................................................................................................................................................AGAAATGCACCTATGGCA.............................1811.001.00-------------------------1.00-------------
.................................................................................................ACGGAGAGGCCGCGGGCCGGT....................................................................................................................................211.000.00----------------------1.00----------------
......CCTCGGCCCCGCGCCCTC..................................................................................................................................................................................................................................181.000.00----------------1.00----------------------
...............................................................................................CCACGGAGAGGCCGCGGGCCTGGC...................................................................................................................................241.000.00--1.00------------------------------------
..................................................................................................CGGAGAGGCCGCGGGCCAG.....................................................................................................................................1911.006.00-1.00-------------------------------------
..................................................................................................CGGAGAGGCCGCGGG.........................................................................................................................................1530.670.67----------------------------------0.33-0.33--
.............................................................................................................................................ACCGCCCCTCCGCGCCCCC..........................................................................................1920.500.50-------------------------------0.50-------
..............................................................CGCGGCGGCCTGGGGGG...........................................................................................................................................................................1730.330.33-----------------------------------0.33---
....................................................................................................GAGAGGCCGCGGGCCG......................................................................................................................................1630.330.33----------0.33----------------------------
..............................................................CGCGGCGGCCTGGGGG............................................................................................................................................................................1630.330.33---------0.33-----------------------------
....................................................................................................GAGAGGCCGCGGGCC.......................................................................................................................................1560.170.17-------------------------------------0.17-

Antisense strand
TCCCCACCTCGGCCCCGCGCCCAGATCTTGAGGCGTTTCCAGGGCGCTGAGTCTGAGGAGTCCGCGGCGGCCTGGGGGCCTGCTTGGAGGAATCTCCACGGAGAGGCCGCGGGCCGGCACTCCCCGGATGCACCAGGAACCACCGCCCCTCCGCGCCCCCGGGCCTCACGTCGCGCCCTCTCTGCCCCCGCCCCTTTCAGGCAAGAAATGCACCTATGGCATCAAGTGCAAGTTCTACCACCCGGAGAGG
......................................................................................................((((((.((((((((......))))..((...(((..........)))..))...))))))))))...................................................................................
.............................................................................................94........................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925PAZD5GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR040021(GSM532906)
G761T_2. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR189782GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038857(GSM458540)
D20. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040025(GSM532910)
G613T. (cervix)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR343334SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
............................................CGGACTCCTCAGACTCAGCG.......................................................................................................................................................................................... 2014.004.00-----4.00---------------------------------
.....................CTGGAAACGCCTCAAGATCTG................................................................................................................................................................................................................ 2112.002.00-------2.00-------------------------------
......................................................................................................................................................................................TGCCCCCGCCCCTTTCCA.................................................. 181.000.00--------------------------1.00------------
...........................................................................GGGCCTGCTTGGAGGGGCC............................................................................................................................................................ 191.000.00------------------------------1.00--------
............CAAGATCTGGGCGCGGGG............................................................................................................................................................................................................................ 1811.001.00-----1.00---------------------------------
..........GGCCCCGCGCCCAGATCG.............................................................................................................................................................................................................................. 181.000.00------------1.00--------------------------
..............................................................................................................................................................................CGGGGGCAGAGAGGGC............................................................ 1611.001.00-----------------------------1.00---------
................................................................................................................................................GCCCCTCCGCGCCCCCGC........................................................................................ 181.000.00-----------1.00---------------------------
............................................................................................................................................GGGCGCGGAGGGGCGGTG............................................................................................ 1820.500.50---------------------------------0.50-----
......................................................................AAGCAGGCCCCCAGG..................................................................................................................................................................... 1570.140.14--------------------------------------0.14