ID: uc003qjd.2_intron_7_0_chr6_143104753_r.3p
GENE: (2)
chr6:143104703-143104952-


(1)
AGO2.ip 		(1)
B-CELL 		(4)
BRAIN 		(20)
CELL-LINE 		(12)
CERVIX 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(3)
SKIN 		(1)
XRN.ip

Sense strand
TATTTATTCAAAAGATTTAAACTATGTTAAAAGAAAGGAAATTCTTTCCTGGGGGCAAAAAAAAAAAGCTTCTTGAGAGATCCAGTTCCAAATTTTCTTTCCTAAAGGAAGGCAGGTTCTGTGAGTGAAGAAGAATGAGCGTGCTTATTAAATTCATTACAGATGTCATCATCTTTTAAATCTTCTTATTCATCTTTTAGATTCCCAGAAGTTGTGCATGAGTTCCTGTGAGGAGAGTTGGCATCTTGGA
....................................................(((((...........((((((......(((((..((.......((((((....))))))..))..))).))...))))))........)))))........................................................................................................
..................................................51..............................................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR040023(GSM532908)
G575T. (cervix)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR038854(GSM458537)
MM653. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR040033(GSM532918)
G603T. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR029130(GSM416759)
DLD2. (cell line)		SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040020(GSM532905)
G699N_2. (cervix)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029125(GSM416754)
U2OS. (cell line)		GSM532872(GSM532872)
G652T. (cervix)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................GGGGGCAAAAAAAAAAA.......................................................................................................................................................................................1706.006.00-3.00----1.00-1.00--1.00----------------------------------
.................................................TGGGGGCAAAAAAAA..........................................................................................................................................................................................1506.006.00-1.00---2.001.00-1.00-------------------1.00-----------------
.................................................TGGGGGCAAAAAAAAACAAA.....................................................................................................................................................................................204.000.00--1.00------1.00--1.00--------------------------1.00------
..................................................GGGGGCAAAAAAAAAA........................................................................................................................................................................................1604.004.00-----1.002.00-1.00-------------------------------------
.................................................TGGGGGCAAAAAAAAAAAC......................................................................................................................................................................................1903.003.00----2.00---------------------1.00-------------------
.................................................TGGGGGCAAAAAAAAAAA.......................................................................................................................................................................................1803.003.00-1.00---------2.00----------------------------------
.................................................TGGGGGCAAAAAAAAAAACA.....................................................................................................................................................................................2003.003.00---------1.00------------1.00-1.00---------------------
..............................................................................................................................................................................................................AGAAGTTGTGCATGAGTTCCTGT.....................2312.002.00-------------------1.00-----1.00--------------------
.................................................TGGGGGCAAAAAAAAACAA......................................................................................................................................................................................192.000.00---------------------1.00--------------------1.00---
...................................................GGGGCAAAAAAAAAA........................................................................................................................................................................................1502.002.00-1.00---1.00----------------------------------------
.................................................TGGGGGCAAAAAAAAAAAG......................................................................................................................................................................................1921.001.00----0.50---------------------------------------0.50-
.................................................TGGGGGCAAAAAAAAAA........................................................................................................................................................................................1701.001.00--------1.00-------------------------------------
.................................................TGGGGGCAAAAAAAAAACAAA....................................................................................................................................................................................2101.001.00-----------------------------1.00----------------
................................................................................................................................................................................................................................CCTGTGAGGAGAGTTGGCAGC.....211.000.00-----------------------------------1.00----------
..................................................GGGGGCAAAAAAAAATAA......................................................................................................................................................................................1801.001.00------------------1.00---------------------------
................................................................................................................................................................................................................................CCTGTGAGGAGAGTTGGAA.......191.000.00-----------------------------------------1.00----
..................................................GGGGGCAAAAAAAAACAA......................................................................................................................................................................................1801.001.00--------------------------------------1.00-------
.................................................TGGGGGCAAAAAAAAAAACAA....................................................................................................................................................................................2101.003.00--1.00-------------------------------------------
......................................................................................................TAAAGGAAGGCAGGTTCTGTGAGTGAAGAAG.....................................................................................................................3111.001.00-----------------1.00----------------------------
........................................................AAAAAAAAAAAGCTTCTACTT.............................................................................................................................................................................211.000.00----------------1.00-----------------------------
.................................................TGGGGGCAAAAAAAAACA.......................................................................................................................................................................................181.000.00--1.00-------------------------------------------
.......................................................................................................................................................................................................................GCATGAGTTCCTGTGAGGAGAGTTGGCATC.....3011.001.00--------------------1.00-------------------------
.................................................TGGGGGCAAAAAAAAAAACAAA...................................................................................................................................................................................2201.003.00---------------------------1.00------------------
.................................................TGGGGGCAAAAAAAAAGAA......................................................................................................................................................................................191.000.00------------1.00---------------------------------
..................................................GGGGGCAAAAAAAAACAAA.....................................................................................................................................................................................1901.001.00------------------------------------1.00---------
................................................CTGGGGGCAAAAAAAAAAAC......................................................................................................................................................................................201.000.00---------------1.00------------------------------
.................................................TGGGGGCAAAAAAAAACCCA.....................................................................................................................................................................................201.000.00---------1.00------------------------------------
.................................................TGGGGGCAAAAAAAAAACAA.....................................................................................................................................................................................2001.001.00--1.00-------------------------------------------
..................................................GGGGGCAAAAAAAAAAACAC....................................................................................................................................................................................2001.006.00--1.00-------------------------------------------
..................................................GGGGGCAAAAAAAAA.........................................................................................................................................................................................1501.001.00-1.00--------------------------------------------
.................................................TGGGGGCAAAAAAAAATC.......................................................................................................................................................................................181.000.00----1.00-----------------------------------------
.................................................TGGGGGCAAAAAAAAACCAA.....................................................................................................................................................................................201.000.00--1.00-------------------------------------------
.................................................TGGGGGCAAAAAAAAAGA.......................................................................................................................................................................................181.000.00-----------------------1.00----------------------
..................................................GGGGGCAAAAAAAAACAAC.....................................................................................................................................................................................1901.001.00----1.00-----------------------------------------
...........................................................................................................................AGTGAAGAAGAATGAGCGTG...........................................................................................................2011.001.00----------------------------------------1.00-----
...................................................GGGGCAAAAAAAAAAACACA...................................................................................................................................................................................201.000.00--------------1.00-------------------------------
...................................................................................................................................................................................................................................GTGAGGAGAGTTGGCATCTTG..2111.001.00-------------1.00--------------------------------
...................................................................................................................................................................................................................................GTGAGGAGAGTTGGCATC.....1820.500.50-------------0.50--------------------------------
..................................................................................................................................................................................................................................TGTGAGGAGAGTTGGCATC.....1920.500.50---------0.50------------------------------------
.......................................................................................................AAAGGAAGGCAGGTTCT..................................................................................................................................1720.500.50-------------------------------------------0.50--
.....................................................................................................................................................................TCATCATCTTTTAAATCT...................................................................1820.500.50---------------------------------------------0.50
..................................................GGGGGCAAAAAAAAAAAG......................................................................................................................................................................................1850.400.40--------------0.200.20------------------------------

Antisense strand
TATTTATTCAAAAGATTTAAACTATGTTAAAAGAAAGGAAATTCTTTCCTGGGGGCAAAAAAAAAAAGCTTCTTGAGAGATCCAGTTCCAAATTTTCTTTCCTAAAGGAAGGCAGGTTCTGTGAGTGAAGAAGAATGAGCGTGCTTATTAAATTCATTACAGATGTCATCATCTTTTAAATCTTCTTATTCATCTTTTAGATTCCCAGAAGTTGTGCATGAGTTCCTGTGAGGAGAGTTGGCATCTTGGA
....................................................(((((...........((((((......(((((..((.......((((((....))))))..))..))).))...))))))........)))))........................................................................................................
..................................................51..............................................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR040023(GSM532908)
G575T. (cervix)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR038854(GSM458537)
MM653. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR040033(GSM532918)
G603T. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR029130(GSM416759)
DLD2. (cell line)		SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040020(GSM532905)
G699N_2. (cervix)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029125(GSM416754)
U2OS. (cell line)		GSM532872(GSM532872)
G652T. (cervix)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................GAGAGATCCAGTTCCATC.............................................................................................................................................................. 188.000.007.00---------------------------------1.00-----------
.................................AAAGGAAATTCTTTCTGGG...................................................................................................................................................................................................... 194.000.00-------4.00--------------------------------------
..........................................................................GAGAGATCCAGTTCCATCCG............................................................................................................................................................ 202.000.002.00---------------------------------------------
......................................................GCAAAAAAAAAAAGCTTAGG................................................................................................................................................................................ 202.000.00----------1.00----------------------1.00------------
......................................................................................................................................ATGAGCGTGCTTATTAATG................................................................................................. 191.000.00-------------------------------1.00--------------
..........................................................AAAAAAAAAGCTTCTTCTA............................................................................................................................................................................. 191.000.00---1.00------------------------------------------
.......................................................................................................................................................................ATCATCTTTTAAATCTATGC............................................................... 201.000.00-------------------------------------1.00--------
..TTTATTCAAAAGATTAGA...................................................................................................................................................................................................................................... 181.000.00--------------------------------1.00-------------
....................................................GGGCAAAAAAAAAAAGGGCG.................................................................................................................................................................................. 201.000.00---1.00------------------------------------------
.........................................................AAAAAAAAAAGCTTCTTGAG............................................................................................................................................................................. 201.000.00---1.00------------------------------------------
......................................................GCAAAAAAAAAAAGCTAAG................................................................................................................................................................................. 191.000.00---1.00------------------------------------------
.....................................................GGCAAAAAAAAAAAGCTACC................................................................................................................................................................................. 201.000.00---1.00------------------------------------------
..........................................................................GAGAGATCCAGTTCCATCC............................................................................................................................................................. 191.000.00------------------------------1.00---------------
..................................................GGGGGCAAAAAAAAAACCTC.................................................................................................................................................................................... 2001.000.00----------1.00-----------------------------------
..................................................GGGGGCAAAAAAAAAACGGA.................................................................................................................................................................................... 2001.000.00----------1.00-----------------------------------
...............................................TTTTTTTTTTTGCCCCCAGG....................................................................................................................................................................................... 2030.330.33----------0.33-----------------------------------
.....................................................AAGCTTTTTTTTTTTGCC................................................................................................................................................................................... 1870.140.14----------0.14-----------------------------------