ID: uc003qig.3_intron_17_0_chr6_139269051_r.3p
GENE: (1)
chr6:139269001-139269250-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(2)
B-CELL 		(6)
BRAIN 		(18)
BREAST 		(14)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(1)
HELA 		(5)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(4)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
GATGACCTTATTGCAAAGCAGTGACTTTTTGTTTGTAAACATATGAACCTGAAACTTGAGGAAGTTGGTTGTCAGTTGTGAGTATTATACCATCTATTAGATAGATATTTTGAGACGTTACAAACAAGTTGGGTAGCTGCTTATTTTTGAAGGGAGATTTTTGTTGTGAATCTTAATGTTAACATTATGTTATTTTATAGATCATGGAGCTTTGTGGTGCAACAAGACTTGGTTATTTTGGAAGAAGTCA
....................................................(((((....))))).....((((..(((((((...((((.(((((...)))))...((((........)))).......))))..)))))))..))))...(((((((.......)))))))............................................................................
..................................................51..........................................................................................................................175.........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782TAX577744(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577580(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		TAX577742(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784TAX577746(Rovira)
total RNA. (breast)		SRR189783SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR189787SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040024(GSM532909)
G613N. (cervix)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040028(GSM532913)
G026N. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR343336SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........................................................TGAGGAAGTTGGTTGTATAG..............................................................................................................................................................................2046.000.0018.001.002.002.00--1.003.002.00--1.001.00-2.001.001.001.00--3.00----1.00---1.00------------------1.00-1.00---------1.00-1.00---1.00--
........................................................TGAGGAAGTTGGTTGTGTGG..............................................................................................................................................................................2026.000.00--1.007.00----4.001.00---1.001.002.00------1.003.002.00------1.001.00----------------------------1.00-------
........................................................TGAGGAAGTTGGTTGTAT................................................................................................................................................................................1814.000.00-1.002.00-1.002.00-1.001.00-1.00------1.00------1.00---------1.001.00---1.00-----------------------------
........................................................TGAGGAAGTTGGTTGTTTGG..............................................................................................................................................................................2011.000.00-2.002.00--2.00-1.00-----1.00--1.00--1.00-----------1.00-------------------------------------
........................................................TGAGGAAGTTGGTTGTATA...............................................................................................................................................................................1911.000.00-1.001.00---2.001.00-2.00------1.00---------1.00-------------1.00-----1.00----------------------
........................................................TGAGGAAGTTGGTTGTA.................................................................................................................................................................................178.000.002.00-1.00----1.00-1.00--1.00----1.00--------1.00------------------------------------------
........................................................TGAGGAAGTTGGTTGTGTG...............................................................................................................................................................................198.000.00-----1.001.00--1.00---1.00--------2.00--1.00-1.00-----------------------------------------
........................................................TGAGGAAGTTGGTTGTATAT..............................................................................................................................................................................205.000.001.002.00----------------------------------------------------1.00-1.00------------
........................................................TGAGGAAGTTGGTTGTTTAG..............................................................................................................................................................................204.000.00-----2.00---------------1.00----------1.00------------------------------------
........................................................TGAGGAAGTTGGTTGTTTG...............................................................................................................................................................................194.000.00-----1.002.00-----------------------1.00--------------------------------------
........................................................TGAGGAAGTTGGTTGTGTGA..............................................................................................................................................................................204.000.00-1.00-2.001.00----------------------------------------------------------------
........................................................TGAGGAAGTTGGTTGTG.................................................................................................................................................................................174.000.00----1.00--1.00-1.00---------------------------1.00-------------------------------
........................................................TGAGGAAGTTGGTTGTGT................................................................................................................................................................................184.000.00--1.00---1.00----1.001.00--------------------------------------------------------
........................................................TGAGGAAGTTGGTTGTATAA..............................................................................................................................................................................204.000.00-2.00----------1.00-----1.00--------------------------------------------------
........................................................TGAGGAAGTTGGTTGTTGGG..............................................................................................................................................................................203.000.00----1.00--------1.00------------1.00------------------------------------------
........................................................TGAGGAAGTTGGTTGTATGG..............................................................................................................................................................................203.000.00----------1.00--------1.00---------1.00---------------------------------------
........................................................TGAGGAAGTTGGTTGTTTGA..............................................................................................................................................................................202.000.00--1.00-------------1.00----------------------------------------------------
........................................................TGAGGAAGTTGGTTGTCTG...............................................................................................................................................................................1912.001.00----1.00---------------------------------------1.00------------------------
........................................................TGAGGAAGTTGGTTGTATAC..............................................................................................................................................................................202.000.002.00--------------------------------------------------------------------
........................................................TGAGGAAGTTGGTTGTGTAT..............................................................................................................................................................................202.000.00----1.00-----1.00----------------------------------------------------------
.......................................................................................................................................................................................................GATCATGGAGCTTTGTGG.................................1812.002.00----------------------------2.00----------------------------------------
........................................................TGAGGAAGTTGGTTGTTCGG..............................................................................................................................................................................202.000.00-----1.00-------1.00-------------------------------------------------------
........................................................TGAGGAAGTTGGTTGTATTG..............................................................................................................................................................................202.000.002.00--------------------------------------------------------------------
........................................................TGAGGAAGTTGGTTGTCTAGT.............................................................................................................................................................................2112.001.00----------------------------------------------------------1.001.00---------
........................................................TGAGGAAGTTGGTTGTTTTG..............................................................................................................................................................................202.000.00--1.00-------------------------------1.00----------------------------------
........................................................TGAGGAAGTTGGTTGTGTTG..............................................................................................................................................................................202.000.00-1.00-1.00-----------------------------------------------------------------
.................................................................................................................................................................................................................CTTTGTGGTGCAACAAG........................1711.001.00-----------------------------------------------1.00---------------------
........................................................TGAGGAAGTTGGTTGTGCGA..............................................................................................................................................................................201.000.00--------1.00------------------------------------------------------------
........................................................TGAGGAAGTTGGTTGTTA................................................................................................................................................................................181.000.00-----------1.00---------------------------------------------------------
........................................................TGAGGAAGTTGGTTGTGAGG..............................................................................................................................................................................201.000.00--------------1.00------------------------------------------------------
.............................................................................................................................................................................................................GGAGCTTTGTGGTGCAACAAGAC......................2311.001.00-------------------------------------------1.00-------------------------
...........................................................................................................................................................................................................ATGGAGCTTTGTGGTGCAACAAG........................2311.001.00-----------------------------------------------------------------1.00---
.....................................................................................................................................................................................................................GTGGTGCAACAAGACTTGGTTA...............2211.001.00---------------------------1.00-----------------------------------------
........................................................TGAGGAAGTTGGTTGTCTCG..............................................................................................................................................................................2011.001.00--------------------------------------1.00------------------------------
.........................................................GAGGAAGTTGGTTGTGTAA..............................................................................................................................................................................191.000.00-----------1.00---------------------------------------------------------
........................................................TGAGGAAGTTGGTTGTCTATT.............................................................................................................................................................................2111.001.00----------1.00----------------------------------------------------------
........................................................TGAGGAAGTTGGTTGTGCGG..............................................................................................................................................................................201.000.00-1.00-------------------------------------------------------------------
........................................................TGAGGAAGTTGGTTGTGGGG..............................................................................................................................................................................201.000.00----------1.00----------------------------------------------------------
........................................................TGAGGAAGTTGGTTGTAGAG..............................................................................................................................................................................201.000.001.00--------------------------------------------------------------------
........................................................TGAGGAAGTTGGTTGTCTAT..............................................................................................................................................................................2011.001.00-----------1.00---------------------------------------------------------
..........................................................................................................................................................................................................CATGGAGCTTTGTGGTGCAACA..........................2211.001.00------------------------------------------1.00--------------------------
........................................................TGAGGAAGTTGGTTGTCTGGT.............................................................................................................................................................................2111.001.00---------------------------------1.00-----------------------------------
........................................................TGAGGAAGTTGGTTGTACT...............................................................................................................................................................................191.000.00------------1.00--------------------------------------------------------
...............AAGCAGTGACTTTTTTTGG........................................................................................................................................................................................................................191.000.00-------------------------------------------------------1.00-------------
.........................................................................................................................................................................................................TCATGGAGCTTTGTGGTGCAACAAGAC......................2711.001.00-----------------------------------------1.00---------------------------
........................................................TGAGGAAGTTGGTTGTCTAG..............................................................................................................................................................................2011.001.001.00--------------------------------------------------------------------
........................................................TGAGGAAGTTGGTTGTC.................................................................................................................................................................................1711.001.00----1.00----------------------------------------------------------------
........................................................TGAGGAAGTTGGTTGTAAGG..............................................................................................................................................................................201.000.00---------------1.00-----------------------------------------------------
........................................................TGAGGAAGTTGGTTGTATG...............................................................................................................................................................................191.000.00--1.00------------------------------------------------------------------
................................................................................................................................................................................................................................AGACTTGGTTATTTTTTAG.......191.000.00---------------------------------------------------------1.00-----------
........................................................TGAGGAAGTTGGTTGTTTGT..............................................................................................................................................................................201.000.00----1.00----------------------------------------------------------------
.......................................................................................................................................................................................................GATCATGGAGCTTTGTGC.................................181.000.00----------------------------1.00----------------------------------------
........................................................TGAGGAAGTTGGTTGTTGG...............................................................................................................................................................................191.000.00------1.00--------------------------------------------------------------
.....................................AACATATGAACCTGAAACTTGAGGAAGTT........................................................................................................................................................................................2911.001.00---------------------------1.00-----------------------------------------
..........................................................................................................................................................................................................CATGGAGCTTTGTGGTGCAACAA.........................2311.001.00-----------------------------------------------------1.00---------------
........................................................TGAGGAAGTTGGTTGTGTGT..............................................................................................................................................................................201.000.00--1.00------------------------------------------------------------------
..............................................................................................................................................................................................................................CAAGACTTGGTTATTTTGGAAG......2211.001.00----------------------------------------------------------------1.00----
........................................................TGAGGAAGTTGGTTGTTGGT..............................................................................................................................................................................201.000.00---------------------------------1.00-----------------------------------
........................................................TGAGGAAGTTGGTTGTGC................................................................................................................................................................................181.000.00----------------------------------------------------1.00----------------
........................................................TGAGGAAGTTGGTTGTATGT..............................................................................................................................................................................201.000.00-------------------1.00-------------------------------------------------
........................................................TGAGGAAGTTGGTTGTTCAG..............................................................................................................................................................................201.000.00------------------1.00--------------------------------------------------
...............................................................................................................................................................TTTGTTGTGAATCTTCTT.........................................................................181.000.00---------------------------------------------1.00-----------------------
.......................................................................................................................................................................................................GATCATGGAGCTTTGTGGTGCAACAA.........................2611.001.00-----------------1.00---------------------------------------------------
...................................................AAACTTGAGGAAGTTTTTA....................................................................................................................................................................................191.000.00---------------------------------------------------1.00-----------------
........................................................................................................................................................................................................ATCATGGAGCTTTGTGGTGC..............................2011.001.00------------------------------------1.00--------------------------------
.........................................................GAGGAAGTTGGTTGTGTGG..............................................................................................................................................................................191.000.00---------------------1.00-----------------------------------------------
........................................................TGAGGAAGTTGGTTGTCTAC..............................................................................................................................................................................2011.001.00----1.00----------------------------------------------------------------
.........................................................GAGGAAGTTGGTTGTCAAATT............................................................................................................................................................................211.000.00---------------------1.00-----------------------------------------------
..................................................................................................................................................................................................................................ACTTGGTTATTTTGGAAGA.....1911.001.00-------------------------1.00-------------------------------------------
........................................................TGAGGAAGTTGGTTGTGAG...............................................................................................................................................................................191.000.00---------1.00-----------------------------------------------------------
........................................................TGAGGAAGTTGGTTGGTT................................................................................................................................................................................181.000.00------------------------------1.00--------------------------------------
............................................................................................................................................................................................................TGGAGCTTTGTGGTGCAAC...........................1911.001.00---------------------------------------------------------------1.00-----
........................................................TGAGGAAGTTGGTTGTAGGG..............................................................................................................................................................................201.000.001.00--------------------------------------------------------------------
........................................................TGAGGAAGTTGGTTGTTGA...............................................................................................................................................................................191.000.00-1.00-------------------------------------------------------------------
......................................................CTTGAGGAAGTTGGTTGTCAGTTGTGAGTA......................................................................................................................................................................3011.001.00-------------------------------------------------1.00-------------------
........................................................TGAGGAAGTTGGTTGTCTCGT.............................................................................................................................................................................2111.001.00-------------------------------------------------------------------1.00-
........................................................TGAGGAAGTTGGTTGCGTG...............................................................................................................................................................................191.000.00----------1.00----------------------------------------------------------
........................................................TGAGGAAGTTGGTTGTGGGA..............................................................................................................................................................................201.000.00-1.00-------------------------------------------------------------------
...............................................................................................................................................................................................................AGCTTTGTGGTGCAAC...........................1620.500.50--------------------------------------------------------------------0.50

Antisense strand
GATGACCTTATTGCAAAGCAGTGACTTTTTGTTTGTAAACATATGAACCTGAAACTTGAGGAAGTTGGTTGTCAGTTGTGAGTATTATACCATCTATTAGATAGATATTTTGAGACGTTACAAACAAGTTGGGTAGCTGCTTATTTTTGAAGGGAGATTTTTGTTGTGAATCTTAATGTTAACATTATGTTATTTTATAGATCATGGAGCTTTGTGGTGCAACAAGACTTGGTTATTTTGGAAGAAGTCA
....................................................(((((....))))).....((((..(((((((...((((.(((((...)))))...((((........)))).......))))..)))))))..))))...(((((((.......)))))))............................................................................
..................................................51..........................................................................................................................175.........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782TAX577744(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577580(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		TAX577742(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784TAX577746(Rovira)
total RNA. (breast)		SRR189783SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR189787SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040024(GSM532909)
G613N. (cervix)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040028(GSM532913)
G026N. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR343336SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................TAGATAGATATTTTGAGCTAG.................................................................................................................................... 211.000.001.00--------------------------------------------------------------------
........................................................................................................................................................GGAGATTTTTGTTGTACC................................................................................ 181.000.00------------------1.00--------------------------------------------------