ID: uc003qci.2_intron_4_0_chr6_131188722_r.5p
GENE: (13)
chr6:131190752-131191001-


(3)
B-CELL 		(5)
BRAIN 		(2)
BREAST 		(10)
CELL-LINE 		(2)
CERVIX 		(2)
FIBROBLAST 		(5)
HEART 		(1)
HELA 		(1)
KIDNEY 		(7)
LIVER 		(3)
OTHER 		(18)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
AACAGGAGTATGAAGAAGAGGTGGAGGAAGAACCCCGCCCGGCAGCCAAGGTAGTAGAGAGGGAGGAAGCAGTGCCCGAAGCCAGCCCAGTCACACAAGCAGGTGCCAGTGTAATCACAGTAGAAACAGTGATCCAGGAAAATGTAGGTGCCCAAAAGATACCCGGAGAGAAGAGTGTACACGAAGGCGCTCTTAAGCAAGACATGGGAGAAGAAGCAGAGGAAGAGCCACAGAAAGTTAACGGAGAGGT
..................................................((.((.((..(((.....((..........))...)))..)))))).....((..((......(((((.((....)).))))).((......))..))..))..................................................................................................
..................................................51........................................................................................................157...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR343335SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................................AGGAAAATGTAGGTGGTG.................................................................................................18185.000.00140.0043.00---2.00-----------------------------------------------------------
...........GAAGAAGAGGTGGAGGAAGAACCCCGCCCGGC...............................................................................................................................................................................................................3215.005.00------------------1.00------------1.00-1.00--1.00------------------1.00---------
.......................................................................................................................................AGGAAAATGTAGGTGGTGA................................................................................................195.000.003.001.00---1.00-----------------------------------------------------------
.......GTATGAAGAAGAGGTGGA.................................................................................................................................................................................................................................1813.003.00------3.00----------------------------------------------------------
...............................................................................................................................................................................................................GAGAAGAAGCAGAGGAAGAGC......................2112.002.00----------2.00------------------------------------------------------
.....................................................................................................................................................................................................CAAGACATGGGAGAAGAAGCAGAG.............................2412.002.00----------------------------------------------------1.00-------1.00----
.................................................................................................................................................................................................................GAAGAAGCAGAGGAAGTC.......................182.000.00-------------2.00---------------------------------------------------
...........................................................................................................................AAACAGTGATCCAGGAAAATGT.........................................................................................................2212.002.00-----------------1.00-------1.00---------------------------------------
.....................................................................................................................CAGTAGAAACAGTGATCC...................................................................................................................1812.002.00-------------------2.00---------------------------------------------
.................................................................................................................................................................................................TAAGCAAGACATGGGAGAAGAAGCA................................2511.001.00--1.00--------------------------------------------------------------
.....................................................................................................................................CCAGGAAAATGTAGGTGCCCAAAAGATACCCGG....................................................................................3311.001.00---------------------------------------1.00-------------------------
.....................................................GTAGAGAGGGAGGAAGCAG..................................................................................................................................................................................1921.001.00--------1.00--------------------------------------------------------
...............................................AAGGTAGTAGAGAGGGAGGAAGCA...................................................................................................................................................................................2411.001.00---1.00-------------------------------------------------------------
..............GAAGAGGTGGAGGAAGAACCCCGCCCGGC...............................................................................................................................................................................................................2911.001.00-------------------------------------1.00---------------------------
......................................................................................................................................................................................GAAGGCGCTCTTAAGGAAG.................................................191.000.00------------------------------------------1.00----------------------
.....................................................................................................................CAGTAGAAACAGTGATCCAGG................................................................................................................2111.001.00-----------------------------------------------------1.00-----------
.......................................................................................................................................AGGAAAATGTAGGTGGTTT................................................................................................191.000.001.00----------------------------------------------------------------
...............................................AAGGTAGTAGAGAGGGAGGA.......................................................................................................................................................................................2011.001.00------------------------------1.00----------------------------------
.....................................................................................................................CAGTAGAAACAGTGATCCAGGAAAATGT.........................................................................................................2811.001.00-----------------------------1.00-----------------------------------
.....................................................................................................................CAGTAGAAACAGTGATCCAGGAAAATGTAGGT.....................................................................................................3211.001.00----1.00------------------------------------------------------------
............................................................................................ACACAAGCAGGTGCCAG.............................................................................................................................................1711.001.00---------------------------------------------------------1.00-------
..........................................................................................................................................................................................................................GAGGAAGAGCCACAGAAAGTTA..........2211.001.00---------------------------1.00-------------------------------------
.............AGAAGAGGTGGAGGAACTCC.........................................................................................................................................................................................................................201.000.00-----------------------------------1.00-----------------------------
.........................................................................................................................AGAAACAGTGATCCAGGAAAATGTAGGTGC...................................................................................................3011.001.00--------------------------------------------------------1.00--------
..........................................CAGCCAAGGTAGTAGAGA..............................................................................................................................................................................................1811.001.00----------------------------------1.00------------------------------
..............................................................................................................................CAGTGATCCAGGAAAATGTAGGTGCCCAAAAGATA.........................................................................................3511.001.00--------------------1.00--------------------------------------------
.............................................................................................CACAAGCAGGTGCCAGTGTAATCACA...................................................................................................................................2611.001.00---1.00-------------------------------------------------------------
...........................................................AGGGAGGAAGCAGTGGTG.............................................................................................................................................................................181.000.00----------------------------------------1.00------------------------
.....................................................................................................................CAGTAGAAACAGTGATCCAGGAAAATGTAGG......................................................................................................3111.001.00------------------------------------------------1.00----------------
...........GAAGAAGAGGTGGAGGAAGAACCCC......................................................................................................................................................................................................................2511.001.00---------------1.00-------------------------------------------------
.....................................................................................................................................................................................................CAAGACATGGGAGAAGAAGCAGAGGAAGA........................2911.001.00------------------------1.00----------------------------------------
............AAGAAGAGGTGGAGGAAGAAC.........................................................................................................................................................................................................................2111.001.00--1.00--------------------------------------------------------------
...............AAGAGGTGGAGGAAGA...........................................................................................................................................................................................................................1601.001.00--------------1.00--------------------------------------------------
...........................AAGAACCCCGCCCGGCAGCCAAGGCAG....................................................................................................................................................................................................271.000.00----------------1.00------------------------------------------------
..........TGAAGAAGAGGTGGAGGAAGAAC.........................................................................................................................................................................................................................2311.001.00-----------------------------------------------------------1.00-----
.........................................................................................................................................................................................................ACATGGGAGAAGAAGCAGAGGAT..........................231.000.00----------------------------------------------------------1.00------
.......................................................................................................................................................................................................AGACATGGGAGAAGAAGCAGAGGAAG.........................2611.001.00---------1.00-------------------------------------------------------
................................................................................................AAGCAGGTGCCAGTGTAATCAC....................................................................................................................................2211.001.00---1.00-------------------------------------------------------------
.......................................................................................................................................AGGAAAATGTAGGTGGTAA................................................................................................191.000.001.00----------------------------------------------------------------
........................................................................................................................................................................................AGGCGCTCTTAAGCAAGACATGGG..........................................2411.001.00----1.00------------------------------------------------------------
............................................................................................................................................................................................................TGGGAGAAGAAGCAGAGGAAGAGCCACAG.................2911.001.00----------------------------------------------1.00------------------
.......................................................................................................................................................................................AAGGCGCTCTTAAGCAAGACATGGGAGAA......................................2911.001.00--------------------------1.00--------------------------------------
..........................................CAGCCAAGGTAGTAGAG...............................................................................................................................................................................................1711.001.00-----------------------------------------------1.00-----------------
..........................................................................................................................................................................AAGAGTGTACACGAAGGCG.............................................................1911.001.00--------------------------------------------------1.00--------------
......................................................................................................................AGTAGAAACAGTGATCC...................................................................................................................1711.001.00-----------1.00-----------------------------------------------------
.......................................................................................................................................AGGAAAATGTAGGTGGTTA................................................................................................191.000.001.00----------------------------------------------------------------
.........................GGAAGAACCCCGCCCGGCA..............................................................................................................................................................................................................1911.001.00-------1.00---------------------------------------------------------
............................................................................................................................................................................................................TGGGAGAAGAAGCAGAGGAAG.........................2111.001.00---------------------------------------------1.00-------------------
..........................................................................................................................GAAACAGTGATCCAGGAAAATGTAGGTGC...................................................................................................2911.001.00------------------1.00----------------------------------------------
...............................................AAGGTAGTAGAGAGGGAGG........................................................................................................................................................................................1911.001.00--------1.00--------------------------------------------------------
......................................................................................................................AGTAGAAACAGTGATC....................................................................................................................1611.001.00-------1.00---------------------------------------------------------
...........................................................................................................................................................AAGATACCCGGAGAGAAGAG...........................................................................2011.001.00-----------1.00-----------------------------------------------------
.......................................................................................................................................AGGAAAATGTAGGTGCCCAAAAGATACCC......................................................................................2911.001.00-----------------------1.00-----------------------------------------
..............................................................................................................................CAGTGATCCAGGAAAATG..........................................................................................................1811.001.00----------------------------1.00------------------------------------
.......................................................................................CAGTCACACAAGCAGGTG.................................................................................................................................................1811.001.00--------------1.00--------------------------------------------------
........................................................GAGAGGGAGGAAGCAGAAA...............................................................................................................................................................................191.000.00------------------------------------------------------1.00----------
....................................................................................................................ACAGTAGAAACAGTGATCCAGGAAAAT...........................................................................................................2711.001.00--------------------------------1.00--------------------------------
..........................................................................................................................................................AAAGATACCCGGAGAGAAGAG...........................................................................2111.001.00--1.00--------------------------------------------------------------
............................................................................................................................................................................................................TGGGAGAAGAAGCAGAGGAAGAGCC.....................2511.001.00--1.00--------------------------------------------------------------
...................................................................................................................CACAGTAGAAACAGTGATCC...................................................................................................................2011.001.00--------------------------------------1.00--------------------------
............................................................................................................................................................................................................TGGGAGAAGAAGCAGAGGAAGAGCCA....................2611.001.00---------------------1.00-------------------------------------------
.............................................................................................................................ACAGTGATCCAGGAAAATGT.........................................................................................................2011.001.00--------------------------------------------1.00--------------------
........TATGAAGAAGAGGTGAGGC...............................................................................................................................................................................................................................191.000.00---------------1.00-------------------------------------------------
..............................................................................................................................................................................................................GGAGAAGAAGCAGAGGACCC........................201.000.00------------1.00----------------------------------------------------
.....................................................................................................................CAGTAGAAACAGTGATCCAGGAAAATGTAGGTGCCG.................................................................................................361.000.00--------------------1.00--------------------------------------------
...................................................TAGTAGAGAGGGAGGTGTT....................................................................................................................................................................................191.000.00------------1.00----------------------------------------------------
.....................................................................................................................CAGTAGAAACAGTGATCCAGGAAA.............................................................................................................2411.001.00--1.00--------------------------------------------------------------
.............................................................................................................................................................GATACCCGGAGAGAAGAGT..........................................................................1911.001.00----1.00------------------------------------------------------------
...................................................................................................................................................................................................AGCAAGACATGGGAGAAGA....................................1911.001.00-------------------------------------------1.00---------------------
...............................................AAGGTAGTAGAGAGGGA..........................................................................................................................................................................................1711.001.00-------------------------------------------------1.00---------------
...............................................AAGGTAGTAGAGAGGGAGGAAGCAGTGCC..............................................................................................................................................................................2911.001.00---------1.00-------------------------------------------------------
.......................................................................................................................................AGGAAAATGTAGGTGGTT.................................................................................................181.000.001.00----------------------------------------------------------------
........................................................................................................................TAGAAACAGTGATCCAGG................................................................................................................1811.001.00---1.00-------------------------------------------------------------
............................................................................................................................................................................................................TGGGAGAAGAAGCAGAGGAAGAGCCACAGAAAGC............341.000.00----------------1.00------------------------------------------------
...................GGTGGAGGAAGAACCAGAA....................................................................................................................................................................................................................191.000.00-------------------------------------------------------------1.00---
......................................................................................................................................CAGGAAAATGTAGGTGCC..................................................................................................1820.500.50---------------------------------------------------------------0.50-
...........................................................................................................................................AAATGTAGGTGCCCAAAAG............................................................................................1920.500.50--------------------------------------------------------------0.50--
....................GTGGAGGAAGAACCCC......................................................................................................................................................................................................................1620.500.50----------------------------------------------------------------0.50
.......................................................................................................................GTAGAAACAGTGATCC...................................................................................................................1620.500.50-------0.50---------------------------------------------------------
......................................................TAGAGAGGGAGGAAGCA...................................................................................................................................................................................1730.330.33---------------------0.33-------------------------------------------
............................................................................................................................................................................................................TGGGAGAAGAAGCAGAG.............................1740.250.25--------0.25--------------------------------------------------------

Antisense strand
AACAGGAGTATGAAGAAGAGGTGGAGGAAGAACCCCGCCCGGCAGCCAAGGTAGTAGAGAGGGAGGAAGCAGTGCCCGAAGCCAGCCCAGTCACACAAGCAGGTGCCAGTGTAATCACAGTAGAAACAGTGATCCAGGAAAATGTAGGTGCCCAAAAGATACCCGGAGAGAAGAGTGTACACGAAGGCGCTCTTAAGCAAGACATGGGAGAAGAAGCAGAGGAAGAGCCACAGAAAGTTAACGGAGAGGT
..................................................((.((.((..(((.....((..........))...)))..)))))).....((..((......(((((.((....)).))))).((......))..))..))..................................................................................................
..................................................51........................................................................................................157...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR343335SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
............AAGAAGAGGTGGAGGACAG........................................................................................................................................................................................................................... 192.000.00----------------------1.00----------------------------1.00-------------
.....................................CCCGGCAGCCAAGGTAGTGCTC............................................................................................................................................................................................... 221.000.00-----------------------------------------1.00-----------------------
...................................................................................................................................................................................................TCTCCCATGTCTTGCT....................................... 1670.140.14---------0.14-------------------------------------------------------