| (12) CELL-LINE | (1) CERVIX | (2) LIVER | (5) OTHER | (1) SKIN | (1) UTERUS | (1) XRN.ip |
| CCTTATAGACTTGCTTTAAATTCTCATATATCGAAGTAAAATCAGAGAACTAGTCATATAGTTTATTTTGTTTTTAAGGACACATTTTTATTTATTTTTCTTTATATTTATTTTTAATCCTGTTTATCTAGCTTATCTGATTTACTTTTTCTGTTTCTAATGTAAGCATTTTCATAACAAAAAATTCATGTGTTTTGTAGTGCCTGGTCCCGTACCAGTAAAATCTCTTCAAGGAACATCCTTTGAAAAT ............................................................................((((........((..(((........)))..)).......)))).........((((((..((...((.......)).))....))))))................................................................................... ..........................................................................75.............................................................................................................186.............................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037935(GSM510473) 293cand3. (cell line) | SRR189784 | SRR343335 | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR040010(GSM532895) G529N. (cervix) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR189783 | SRR094131(GSM651907) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR189782 | SRR189785 | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR330868(SRX091706) tissue: skin psoriatic involveddisease state:. (skin) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | SRR037939(GSM510477) 293cand5_rep1. (cell line) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR037943(GSM510481) 293DcrTN. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................ACACATTTTTATTTATTTTTCT..................................................................................................................................................... | 22 | 1 | 19.00 | 19.00 | 6.00 | 8.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................ACACATTTTTATTTATTTTTCTTTATATTTAT........................................................................................................................................... | 32 | 1 | 4.00 | 4.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................ACATTTTTATTTATTTTTTCTG................................................................................................................................................... | 22 | 3.00 | 0.00 | 1.00 | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................TTTTTATTTATTTTTCCTGG.................................................................................................................................................. | 20 | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................ACACATTTTTATTTATTTTTC...................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................ATTTTTATTTATTTTTCGG.................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................TTTTTATTTATTTTTCTTTATATTTATTTAC....................................................................................................................................... | 31 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................TCCCGTACCAGTAAAATCT........................ | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................TTTTTATTTATTTTTCTTTTTTC............................................................................................................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................AAGCATTTTCATAACAACG.................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ...................................................................................................CTTTATATTTATTTTTAAAAC.................................................................................................................................. | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................TTTTATTTATTTTTCTTATAG................................................................................................................................................ | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................TCTTTATATTTATTTTTTTTG................................................................................................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................GTTTTTAAGGACACAGC.................................................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................GTTTATCTAGCTTATCTCA.............................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................CATTTTTATTTATTTTTCTTTATCTCA............................................................................................................................................. | 27 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................CATTTTTATTTATTTTTCTTTCTC................................................................................................................................................ | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................ATTTACTTTTTCTGTTTCTTAT......................................................................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................ACACATTTTTATTTATTTTTTT..................................................................................................................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................ACACATTTTTATTTATTTTTCTTTATATCTAT........................................................................................................................................... | 32 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................GTCCCGTACCAGTAAAATA......................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........TTGCTTTAAATTCTCCTGT............................................................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ................................................................................................................................TAGCTTATCTGATTTATG........................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................TAGCTTATCTGATTTGAC........................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ..............................................................................................................................................................................................................GTCCCGTACCAGTAAAATC......................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................ACATTTTTATTTATTTTTTTTG................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................ATTTTTATTTATTTTTCTGGAG................................................................................................................................................. | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CATTTTCATAACAAAATCAG................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................................CCGTACCAGTAAAATCTCTTCA................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...................................................................................................CTTTATATTTATTTTTCTTT................................................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................ACACATTTTTATTTATTTT........................................................................................................................................................ | 19 | 3 | 0.67 | 0.67 | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - |
| .................................................................................ACATTTTTATTTATTTTTCT..................................................................................................................................................... | 20 | 4 | 0.50 | 0.50 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................ACACATTTTTATTTATTTTCCT..................................................................................................................................................... | 22 | 3 | 0.33 | 0.67 | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................TTATTTTTCTTTATATTTAT........................................................................................................................................... | 20 | 6 | 0.17 | 0.17 | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CCTTATAGACTTGCTTTAAATTCTCATATATCGAAGTAAAATCAGAGAACTAGTCATATAGTTTATTTTGTTTTTAAGGACACATTTTTATTTATTTTTCTTTATATTTATTTTTAATCCTGTTTATCTAGCTTATCTGATTTACTTTTTCTGTTTCTAATGTAAGCATTTTCATAACAAAAAATTCATGTGTTTTGTAGTGCCTGGTCCCGTACCAGTAAAATCTCTTCAAGGAACATCCTTTGAAAAT ............................................................................((((........((..(((........)))..)).......)))).........((((((..((...((.......)).))....))))))................................................................................... ..........................................................................75.............................................................................................................186.............................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037935(GSM510473) 293cand3. (cell line) | SRR189784 | SRR343335 | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR040010(GSM532895) G529N. (cervix) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR189783 | SRR094131(GSM651907) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR189782 | SRR189785 | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR330868(SRX091706) tissue: skin psoriatic involveddisease state:. (skin) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | SRR037939(GSM510477) 293cand5_rep1. (cell line) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR037943(GSM510481) 293DcrTN. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................TTTTCTGTTTCTAATCTGC..................................................................................... | 19 | 3.00 | 0.00 | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................ATCAGAGAACTAGTCGAGA............................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ......................................................................................................................................................................................................................................AAGGAACATCCTTTGTTG.. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................TTGTAGTGCCTGGTCG........................................ | 16 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................TAAAATCAGAGAACTAT..................................................................................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................CATAACAAAAAATTCATTAG.......................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................TATAGTTTATTTTGTTTAT............................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TCATAACAAAAAATTGAAA............................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| .........................................................................................................................................................................................TCATGTGTTTTGTAGCCG............................................... | 18 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AATTTTTTGTTATGAAAA................................................................ | 18 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 |