ID: uc003qam.2_intron_5_0_chr6_126319831_f.3p
GENE: (6)
chr6:126320403-126320652+


(1)
AGO3.ip
(11)
B-CELL
(3)
BRAIN
(12)
BREAST
(13)
CELL-LINE
(4)
CERVIX
(6)
HEART
(2)
HELA
(7)
LIVER
(4)
OTHER
(1)
RRP40.ip
(12)
SKIN
(1)
TESTES

Sense strand
AAAAAGTAAATGGAATGACATTAAGCAATAAAAGGCTTTGTTCATAACTACCTCAATTACATTATTTTAAATAAATAAGTTTAGAGCAGTAATAAGTGGAAAGAAGTTCTTATCAGCAAAATACAATGGTCTTATTGTGAGTGATTATCTTAAGTCTATTCTGTATGGCTATACTAACATAAGAAATATCTCTGATTTAGATTGCAGATGGACAGAGAGAGCTTATTGAGTCATACAGTGTCAAAAAGAG
......................................................................................................................................................((((((..((((.((((..........))))))))........))))))...................................................
.............................................................................................................................................142.......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
TAX577745(Rovira)
total RNA. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR038859(GSM458542)
MM386. (cell line)
TAX577738(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR037936(GSM510474)
293cand1. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR191428(GSM715538)
160genomic small RNA (size selected RNA from . (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR040031(GSM532916)
G013T. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR038858(GSM458541)
MEL202. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR040039(GSM532924)
G531T. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577579(Rovira)
total RNA. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343335SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
.....................................................................................................................................................................................AGAAATATCTCTGATAAAA..................................................1985.000.00-12.00-7.006.004.004.002.002.00-4.004.003.001.001.003.002.002.001.00--1.00---1.001.00-1.001.00-1.001.001.00--1.00-1.001.00-1.00-1.001.001.001.001.001.00--1.001.00-1.001.00-1.00--1.001.001.00-1.00----------
.....................................................................................................................................................................................AGAAATATCTCTGATAAA...................................................1829.000.00---1.001.001.001.001.002.002.00---1.002.00-1.00-1.00-2.00---2.001.00-1.00--1.00---1.001.00------1.00------1.001.00--1.00-----1.00---1.00-----------
.....................................................................................................................................................................................AGAAATATCTCTGATATC...................................................1815.000.0015.00--------------------------------------------------------------------------
.....................................................................................................................................................................................AGAAATATCTCTGATAA....................................................178.000.00---------2.00---1.00---1.00----2.00--------------1.00------------------1.00------------------
.................................................................................................................................TCTTATTGTGAGTGATTATCTTAAGTCTATTCTGTATGGCTATACTAACATAAGAAATATCTCTGATTTAG..................................................7118.008.00--8.00------------------------------------------------------------------------
..................................................................................................................................................ATCTTAAGTCTATTCTGTATGGC.................................................................................2312.002.00-----------------------2.00---------------------------------------------------
.......................................................................................AGTAATAAGTGGAAAGAAGTTCTAATC........................................................................................................................................271.000.00-------------------------------------------------------------------1.00-------
...................................................................................................................GCAAAATACAATGGTCTTATTGT................................................................................................................2311.001.00-------------------1.00-------------------------------------------------------
.............................................................................................AAGTGGAAAGAAGTTGGGG..........................................................................................................................................191.000.00-----------------------------------------------------------------1.00---------
........................................................................................................................................................................CTATACTAACATAAGAAATATAT...........................................................231.000.00-------1.00-------------------------------------------------------------------
..................................................................................................................................................................................................ATTTAGATTGCAGATGGTCAG...................................211.000.00------------------------------------------------------------------1.00--------
...........................................................................................ATAAGTGGAAAGAAGTTG.............................................................................................................................................181.000.00----------------------------------------------------------1.00----------------
......................................................................................................................................................................................................AGATTGCAGATGGACAGAGAGAG.............................2311.001.00-------1.00-------------------------------------------------------------------
...................................................................TAAATAAATAAGTTTAGAGCAGTAATAAGT.........................................................................................................................................................3011.001.00-------------------1.00-------------------------------------------------------
.....................................................................................................................................................................................AGAAATATCTCTGATAATA..................................................191.000.00---------------------1.00-----------------------------------------------------
.........................................................................................................................................................................................................TTGCAGATGGACAGAGAG...............................1820.500.50----------------------------------------------------------------------0.50----
.............................................................................................................................................................................................................AGATGGACAGAGAGAGCTTATTGAGTC..................2730.330.33------------------------------------------------------------------------0.33--
.............................................................................................................................................................................................................AGATGGACAGAGAGAGCT...........................1830.330.33-----------------------------------------------------------------------0.33---
...............................................................................................................................................................................................................ATGGACAGAGAGAGCTT..........................1740.250.25--------------------------------------------------------------------------0.25

Antisense strand
AAAAAGTAAATGGAATGACATTAAGCAATAAAAGGCTTTGTTCATAACTACCTCAATTACATTATTTTAAATAAATAAGTTTAGAGCAGTAATAAGTGGAAAGAAGTTCTTATCAGCAAAATACAATGGTCTTATTGTGAGTGATTATCTTAAGTCTATTCTGTATGGCTATACTAACATAAGAAATATCTCTGATTTAGATTGCAGATGGACAGAGAGAGCTTATTGAGTCATACAGTGTCAAAAAGAG
......................................................................................................................................................((((((..((((.((((..........))))))))........))))))...................................................
.............................................................................................................................................142.......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
TAX577745(Rovira)
total RNA. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR038859(GSM458542)
MM386. (cell line)
TAX577738(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR037936(GSM510474)
293cand1. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR191428(GSM715538)
160genomic small RNA (size selected RNA from . (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR040031(GSM532916)
G013T. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR038858(GSM458541)
MEL202. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR040039(GSM532924)
G531T. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577579(Rovira)
total RNA. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343335SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
................................................................................................TGGAAAGAAGTTCTTTTTG....................................................................................................................................... 191.000.00----------------------------------------1.00----------------------------------
.....................................................................................................................................ATTGTGAGTGATTATG..................................................................................................... 160.750.00--------------------------------------------------------------------0.250.50-----
.....................................................................................................................................ATTGTGAGTGATTATGAAG.................................................................................................. 190.380.00--------------------------------------------------------------------0.12----0.25-
.....................................................................................................................................ATAATCACTCACAAT...................................................................................................... 1580.250.25--------------------------------------------------------------------0.25------