| (1) B-CELL | (2) BRAIN | (4) BREAST | (22) CELL-LINE | (1) HELA | (1) LIVER | (2) OTHER | (1) SKIN | (1) UTERUS | (1) XRN.ip |
| GATTCACTTTTTTCAGGTTTGTGCATACTTATATATACATGATGTCTCTTGTAAGTATCACAGAGAATTTTTTAAATATAATCTGACAATCTCTGTCTTTTGATTGGAGTATTTAGATCCCTTTTATTTACTGTGGTTACTGATATATTTAAGTTTGGATCTATTATTTTACTATTTTTTTATTTAGTCCACCTGTTTTCCCTCCCTTCTCTCATTTCTTGCTTTTCTTTGGATTTAACCCGTATTTATT .............................................................(((......(((((((((.(((.((((.....))))...((((((.((((..((((.....))))..)))).))))))..))))))))))))......)))........................................................................................ .......................................................56...................................................................................................................................189........................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR037937(GSM510475) 293cand2. (cell line) | SRR037932(GSM510470) 293cand4_rep1. (cell line) | SRR037939(GSM510477) 293cand5_rep1. (cell line) | SRR037940(GSM510478) 293cand5_rep2. (cell line) | SRR029127(GSM416756) A549. (cell line) | SRR029131(GSM416760) MCF7. (cell line) | SRR037938(GSM510476) 293Red. (cell line) | SRR037943(GSM510481) 293DcrTN. (cell line) | SRR037942(GSM510480) 293DroshaTN_cand5. (cell line) | SRR029124(GSM416753) HeLa. (hela) | SRR037936(GSM510474) 293cand1. (cell line) | TAX577745(Rovira) total RNA. (breast) | SRR033729(GSM497074) splenic MZL (Splenic414). (B cell) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189784 | SRR444045(SRX128893) Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) | SRR029128(GSM416757) H520. (cell line) | TAX577741(Rovira) total RNA. (breast) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR038861(GSM458544) MM466. (cell line) | SRR037941(GSM510479) 293DroshaTN. (cell line) | SRR038857(GSM458540) D20. (cell line) | SRR107296(GSM677703) 18-30nt fraction of small RNA. (cell line) | SRR037934(GSM510472) 293cand4_rep3. (cell line) | TAX577738(Rovira) total RNA. (breast) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | GSM450597(GSM450597) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR037933(GSM510471) 293cand4_rep2. (cell line) | SRR029125(GSM416754) U2OS. (cell line) | SRR094131(GSM651907) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................CAGAGAATTTTTTAAATTAGA......................................................................................................................................................................... | 21 | 144.00 | 0.00 | 41.00 | 9.00 | 25.00 | 18.00 | 16.00 | 8.00 | 7.00 | 6.00 | 2.00 | 1.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | 1.00 | 1.00 | 1.00 | - | 1.00 | - | - | 1.00 | 1.00 | - | - | |
| ............................................................CAGAGAATTTTTTAAATTATA......................................................................................................................................................................... | 21 | 31.00 | 0.00 | 1.00 | 23.00 | - | - | 1.00 | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ............................................................CAGAGAATTTTTTAAATTAGT......................................................................................................................................................................... | 21 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TTTTACTATTTTTTTGGGT................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................CAGAGAATTTTTTAAATTCGA......................................................................................................................................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................TCACAGAGAATTTTTAGTG.............................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ............................................................CAGAGAATTTTTTAAGT............................................................................................................................................................................. | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................TATTTTACTATTTTTTTGTTG................................................................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................CAGAGAATTTTTTAAATTAAA......................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................CAGAGAATTTTTTAAATTACA......................................................................................................................................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................ACAATCTCTGTCTTTGTTT.................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................CAGAGAATTTTTTAAATATC.......................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................CAGAGAATTTTTTAAATCAGA......................................................................................................................................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TTTTACTATTTTTTTAAAAG................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................CAGAGAATTTTTTAAATTAG.......................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................CAGAGAATTTTTTAAATTAGG......................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................CAGAGAATTTTTTAAATTCGC......................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................GAATTTTTTAAATATCACA....................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................CAGAGAATTTTTTAAATA............................................................................................................................................................................ | 18 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - |
| ............................................................CAGAGAATTTTTTAAATAAGA......................................................................................................................................................................... | 21 | 4 | 0.25 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GATTCACTTTTTTCAGGTTTGTGCATACTTATATATACATGATGTCTCTTGTAAGTATCACAGAGAATTTTTTAAATATAATCTGACAATCTCTGTCTTTTGATTGGAGTATTTAGATCCCTTTTATTTACTGTGGTTACTGATATATTTAAGTTTGGATCTATTATTTTACTATTTTTTTATTTAGTCCACCTGTTTTCCCTCCCTTCTCTCATTTCTTGCTTTTCTTTGGATTTAACCCGTATTTATT .............................................................(((......(((((((((.(((.((((.....))))...((((((.((((..((((.....))))..)))).))))))..))))))))))))......)))........................................................................................ .......................................................56...................................................................................................................................189........................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR037937(GSM510475) 293cand2. (cell line) | SRR037932(GSM510470) 293cand4_rep1. (cell line) | SRR037939(GSM510477) 293cand5_rep1. (cell line) | SRR037940(GSM510478) 293cand5_rep2. (cell line) | SRR029127(GSM416756) A549. (cell line) | SRR029131(GSM416760) MCF7. (cell line) | SRR037938(GSM510476) 293Red. (cell line) | SRR037943(GSM510481) 293DcrTN. (cell line) | SRR037942(GSM510480) 293DroshaTN_cand5. (cell line) | SRR029124(GSM416753) HeLa. (hela) | SRR037936(GSM510474) 293cand1. (cell line) | TAX577745(Rovira) total RNA. (breast) | SRR033729(GSM497074) splenic MZL (Splenic414). (B cell) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189784 | SRR444045(SRX128893) Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) | SRR029128(GSM416757) H520. (cell line) | TAX577741(Rovira) total RNA. (breast) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR038861(GSM458544) MM466. (cell line) | SRR037941(GSM510479) 293DroshaTN. (cell line) | SRR038857(GSM458540) D20. (cell line) | SRR107296(GSM677703) 18-30nt fraction of small RNA. (cell line) | SRR037934(GSM510472) 293cand4_rep3. (cell line) | TAX577738(Rovira) total RNA. (breast) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | GSM450597(GSM450597) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR037933(GSM510471) 293cand4_rep2. (cell line) | SRR029125(GSM416754) U2OS. (cell line) | SRR094131(GSM651907) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................CTGTGGTTACTGATAACTC..................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................CTCCCTTCTCTCATTTCTATT............................ | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| .................................................................................................................................................................................................TGTTTTCCCTCCCTTAGC....................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................................TACGGGTTAAATCCA...... | 15 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................AAGGGAGGGAAAACAGG.......................................... | 17 | 5 | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.20 |