ID: uc003pxp.1_intron_27_0_chr6_117704672_r.5p
GENE: ROS1(15)
chr6:117706646-117706895-


(1)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(7)
CELL-LINE 		(1)
LIVER 		(1)
OTHER 		(2)
SKIN

Sense strand
CTTTTGAGTGGCTGGGTCACTTTCTCTACTGGGCTGGAAAGACATATGTGGTGAGTTAAAGCATGGCATTCTGGATGCTCTAGAATGATACTTATCCACTTCAGTGACTTGCACACCAATTTCTTTTTTTTTTTTAAATACCTGTGCACCACTTATGCTATTATTTATTTAATGTTTATCTTTAAACCAAGTCACTTAAACATTTTTTTTTTCTTTTTTTGAGACACAATTTCACCCTGCTGCCCAGGCT
.............................................................................................................((((((...((((.............))))...))))))..........(((((......)))))............................................................................
.............................................................................................................110...................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		TAX577741(Rovira)
total RNA. (breast)
..................................................................................................................ACCAATTTCTTTTTTTTTTG....................................................................................................................2084.000.0032.0023.0017.0010.00--2.00-------
....................................................................................................................CAATTTCTTTTTTTTTTTTGG.................................................................................................................215.000.003.002.00------------
..................................................................................................................ACCAATTTCTTTTTTTTTCTTG..................................................................................................................223.000.00---3.00----------
.......................................................................................................................TTTCTTTTTTTTTTTTAAATAAATG..........................................................................................................253.000.00-1.001.001.00----------
..................................................................................................................ACCAATTTCTTTTTTTTTTGG...................................................................................................................212.000.00-1.001.00-----------
...................................................................................................................CCAATTTCTTTTTTTTTTTCG..................................................................................................................212.000.001.001.00------------
.........................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGAGTCGG.......................262.000.00-----2.00--------
..........................................................................................................................CTTTTTTTTTTTTAAATACAAG..........................................................................................................222.000.00--1.001.00----------
......................................................................................................................ATTTCTTTTTTTTTTTTACTTG..............................................................................................................222.000.00-1.001.00-----------
....................................................................................................................CAATTTCTTTTTTTTTTTTCTG................................................................................................................222.000.00--2.00-----------
..........................................................................................................................CTTTTTTTTTTTTAAATACCTTTAG.......................................................................................................252.000.001.00-1.00-----------
....................................................................................................................CAATTTCTTTTTTTTTTTTAAG................................................................................................................222.000.00-1.001.00-----------
..................................................................................................................ACCAATTTCTTTTTTTTTTTCTG.................................................................................................................232.000.00-1.00-1.00----------
.......................................................................................................................................................................................................ACATTTTTTTTTTCTTTTTTACTC...........................242.000.00----1.001.00--------
......................................................................................................................ATTTCTTTTTTTTTTTTAAAAGG.............................................................................................................232.000.002.00-------------
..................................................................................................................ACCAATTTCTTTTTTTTTTTT...................................................................................................................2191.441.440.440.670.110.22----------
.......................................................................................................................TTTCTTTTTTTTTTTTAAATACAAG..........................................................................................................251.000.001.00-------------
............................CTGGGCTGGAAAGACAGTG...........................................................................................................................................................................................................191.000.00---------1.00----
.........................CTACTGGGCTGGAAAGACGTGA...........................................................................................................................................................................................................221.000.00------------1.00-
..........................................................................................................................................................................................................TTTTTTTTTTCTTTTTTTGAGCCG........................241.000.00-----1.00--------
.................................................................................................................................................................................................ACTTAAACATTTTTTTTTTTTAG..................................231.000.00---1.00----------
..................................................................................................................ACCAATTTCTTTTTTTTTTTCG..................................................................................................................221.000.00--1.00-----------
.........................................................................................................................TCTTTTTTTTTTTTAAATTTGG...........................................................................................................221.000.001.00-------------
......................................................................................................................ATTTCTTTTTTTTTTTTATCTA..............................................................................................................221.000.001.00-------------
.........................................................................................................................TCTTTTTTTTTTTTAAATATATG..........................................................................................................231.000.001.00-------------
.......................................................................................................................................................................................................ACATTTTTTTTTTCTTACT................................191.000.00----1.00---------
.............................................................................................................................TTTTTTTTTTAAATACGCCG.........................................................................................................201.000.001.00-------------
....................................................................................................................CAATTTCTTTTTTTTTTCG...................................................................................................................191.000.00---1.00----------
...................................................................................................................CCAATTTCTTTTTTTTTTTTATG................................................................................................................231.000.001.00-------------
.........................................................................................................................................................................................................................................ACCCTGCTGCCCAGGCTGGGG211.000.00-----1.00--------
....................................................................................................................CAATTTCTTTTTTTTTCTTG..................................................................................................................201.000.00---1.00----------
...................................................................................................................CCAATTTCTTTTTTTTTTTTCAG................................................................................................................231.000.001.00-------------
...........................................................................................................................................................................................................TTTTTTTTTCTTTTTTTGAGCCGG.......................241.000.00----1.00---------
.........................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGAGGGAG.......................261.000.00-----1.00--------
......................................................................................................................ATTTCTTTTTTTTTTTTAAATTAAG...........................................................................................................251.000.00---1.00----------
......................................................................................................................ATTTCTTTTTTTTTTTTAAAAAAG............................................................................................................241.000.00-1.00------------
.......................................................................................................................................................................................................ACATTTTTTTTTTCTTTTACTC.............................221.000.00----1.00---------
.........................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGAGAAGG.......................261.000.00----1.00---------
.........................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGAGGCGG.......................261.000.00----1.00---------
.......................................................................................................................TTTCTTTTTTTTTTTTAAATTTGG...........................................................................................................241.000.00-1.00------------
.....................................................................................................................AATTTCTTTTTTTTTTTTAACC...............................................................................................................221.000.00------1.00-------
.................................................................................................................CACCAATTTCTTTTTTTTTTTTG..................................................................................................................231.000.00---1.00----------
.......................................................................................................................................................................................................ACATTTTTTTTTTCTTTTTTTGGGG..........................251.000.00----1.00---------
........................................................................................................................................................................................................CATTTTTTTTTTCTTTTTTTCCTT..........................241.000.00---1.00----------
....................................................................................................................CAATTTCTTTTTTTTTTTCAAG................................................................................................................221.000.00--1.00-----------
........................................................................................................................................................................................................CATTTTTTTTTTCTTTTTTTCTAT..........................241.000.00------1.00-------
......................................................................................................................ATTTCTTTTTTTTTTTTAAATATG............................................................................................................241.000.001.00-------------
.......................................................................................................................................................................................................ACATTTTTTTTTTCTTTTTTTGAGAGTGA......................291.000.00-----1.00--------
.....................................................................................................................AATTTCTTTTTTTTTTTTAAAAA..............................................................................................................231.000.001.00-------------
.........................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGAGGG.........................241.000.00-----1.00--------
....................................................................................................................CAATTTCTTTTTTTTTTTCAG.................................................................................................................211.000.00--1.00-----------
.......................................................................................................................TTTCTTTTTTTTTTTTAAATACATG..........................................................................................................251.000.00---1.00----------
....................................................................................................................CAATTTCTTTTTTTTTTTTATG................................................................................................................221.000.00-1.00------------
..................................................................................................................ACCAATTTCTTTTTTTTTTCCG..................................................................................................................221.000.00---1.00----------
.........................................................................................................................TCTTTTTTTTTTTTAAATACTAAA.........................................................................................................241.000.001.00-------------
....................................................................................................................CAATTTCTTTTTTTTTTTTAGG................................................................................................................221.000.001.00-------------
.......................................................................................................................................................................................................ACATTTTTTTTTTCTTTTTTCTC............................231.000.00-----1.00--------
.......................................................................................................................................................................................................ACATTTTTTTTTTCTTTTCTTT.............................221.000.00---1.00----------
........................................................................................................................TTCTTTTTTTTTTTTAAATACTTCG.........................................................................................................251.000.00---1.00----------
.........................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGAGACGGGA.....................281.000.00----1.00---------
...................................GGAAAGACATATGTGGTGA....................................................................................................................................................................................................1911.001.00-------1.00------
.......................................................................................................................................................................................................ACATTTTTTTTTTCTTTGGTG..............................211.000.00----1.00---------
............................................................................................................................................................................................................TTTTTTTTCTTTTTTTGAGACCGGC.....................251.000.00----1.00---------
....................................................................................................................CAATTTCTTTTTTTTTTTTATGTG..............................................................................................................241.000.00--1.00-----------
......................................................................................................................................................................................................AACATTTTTTTTTTCTTTATG...............................211.000.001.00-------------
........................................................................................................................................................................................................CATTTTTTTTTTCTTTTTTTAAG...........................231.000.00---1.00----------
.................................................................................................................................................................................................ACTTAAACATTTTTTTTTTTTTG..................................231.000.001.00-------------
.......................................................................................................................TTTCTTTTTTTTTTTTAAATACCG...........................................................................................................241.000.001.00-------------
.......................................................................................................................................................................................................ACATTTTTTTTTTCTTTTTTTCTG...........................241.000.00------1.00-------
..................................................................................................................ACCAATTTCTTTTTTTTTATG...................................................................................................................211.000.00------1.00-------
......................................................................................................................ATTTCTTTTTTTTTTTTAACTCG.............................................................................................................231.000.00-1.00------------
.........................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGTCGT.........................241.000.00-----1.00--------
..................................................................................................................ACCAATTTCTTTTTTTTCTG....................................................................................................................201.000.00--1.00-----------
.......................................................................................................................................................................................................ACATTTTTTTTTTCTTTTTAATG............................231.000.00---1.00----------
.......................................................................................................................................................................................................ACATTTTTTTTTTCTTTTTTTGGC...........................241.000.00----1.00---------
......................................................................................................................ATTTCTTTTTTTTTTTTAACCCG.............................................................................................................231.000.001.00-------------
.............................................................................................................................................................CTATTATTTATTTAATTAG..........................................................................191.000.00--1.00-----------
.........................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGAGTACT.......................261.000.00----1.00---------
..................................................................................................................ACCAATTTCTTTTTTTTTTTCTTG................................................................................................................241.000.00--1.00-----------
......................................................................................................................ATTTCTTTTTTTTTTTTAAAATG.............................................................................................................231.000.00-1.00------------
....................................................................................................................................................................................................................................ATTTCACCCTGCTGCTTAG...191.000.00--------1.00-----
.........................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGACGG.........................241.000.00-----1.00--------
.......................................................................................................................................................................................................ACATTTTTTTTTTCTTTTCGGG.............................221.000.00-----1.00--------
..................................................................................................................ACCAATTTCTTTTTTTTTACTG..................................................................................................................221.000.00---1.00----------
........................................................................................................................................................................................................CATTTTTTTTTTCTTTTTTTACAG..........................241.000.00---1.00----------
....................................................................................................................CAATTTCTTTTTTTTTAAAG..................................................................................................................201.000.00-1.00------------
.........................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGGTTG.........................241.000.00-----1.00--------
.........................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGAGTTGG.......................261.000.00----1.00---------
........................................................................................................................TTCTTTTTTTTTTTTAAATTGGG...........................................................................................................231.000.00----1.00---------
.........................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGGAAC.........................241.000.00-----1.00--------
..........................................................................................................................................................................................................TTTTTTTTTTCTTTTTTTGAGCAGG.......................251.000.00----1.00---------
......................................................................................................................................................................................................................................TTCACCCTGCTGCCCAGGCTGCTC241.000.00----1.00---------
.......................................................................................................................................................................................................ACATTTTTTTTTTCTTTTTTCTCC...........................241.000.00----1.00---------
........................................................................................................................................................................................................CATTTTTTTTTTCTTTTTTATG............................221.000.00-1.00------------
......................................................................................................................ATTTCTTTTTTTTTTTTACAGC..............................................................................................................221.000.00-----1.00--------
.................................................................................................................CACCAATTTCTTTTTTTTTTTTTG.................................................................................................................241.000.00--1.00-----------
..................................................................................................................ACCAATTTCTTTTTTTTTTTTA..................................................................................................................2220.500.50---0.50----------
..................................................................................................................ACCAATTTCTTTTTTTTTTTTGG.................................................................................................................2390.331.44-0.33------------
....................................................................................................................CAATTTCTTTTTTTTTTTTAAA................................................................................................................2240.250.25-0.25------------
....................................................................................................................CAATTTCTTTTTTTTTTTTAAACG..............................................................................................................2440.250.250.25-------------
..................................................................................................................ACCAATTTCTTTTTTTTTTTTCTG................................................................................................................2490.221.44--0.110.11----------
......................................................................................................................................................................................................AACATTTTTTTTTTCTTTTTTTG.............................2360.170.17---0.17----------
..................................................................................................................ACCAATTTCTTTTTTTTTTTTCG.................................................................................................................2390.111.44--0.11-----------
..................................................................................................................ACCAATTTCTTTTTTTTTTTTCCG................................................................................................................2490.111.440.11-------------
..................................................................................................................ACCAATTTCTTTTTTTTTTTTCCGG...............................................................................................................2590.111.44---0.11----------

Antisense strand
CTTTTGAGTGGCTGGGTCACTTTCTCTACTGGGCTGGAAAGACATATGTGGTGAGTTAAAGCATGGCATTCTGGATGCTCTAGAATGATACTTATCCACTTCAGTGACTTGCACACCAATTTCTTTTTTTTTTTTAAATACCTGTGCACCACTTATGCTATTATTTATTTAATGTTTATCTTTAAACCAAGTCACTTAAACATTTTTTTTTTCTTTTTTTGAGACACAATTTCACCCTGCTGCCCAGGCT
.............................................................................................................((((((...((((.............))))...))))))..........(((((......)))))............................................................................
.............................................................................................................110...................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		TAX577741(Rovira)
total RNA. (breast)
.................................................................................................................................TTTTTTAAATACCTGCC........................................................................................................ 171.000.00----------1.00---
........................................GACATATGTGGTGAGGGG................................................................................................................................................................................................ 181.000.00-------------1.00