ID: uc003pxh.2_intron_4_0_chr6_117019962_f.3p
GENE: (5)
chr6:117022982-117023231+


(1)
B-CELL
(1)
BREAST
(8)
CELL-LINE
(1)
CERVIX
(2)
HEART
(2)
OTHER
(3)
SKIN

Sense strand
TTTCTGTAATCAGTGATCTTTGATGACAATTACTTTTTTTTCTATGAGTTTTTATCCTTAAATCTGACTTCACAATGAATCTTAATATAAGTCAGTCTTTCACACTTGTCCTGGCAGGTCTTTACTCCCTCTCTTTCCTTCTTTGCCTTTCTGACAATTCTTTGGTTCTTTCATTTATTTTACCTTTTTTTTCTTCTTAGTTTGAAGCTGCATGGGCATTAACAAATATAGCATCTGGAACTTTTCTGCA
.........................................................................................................(((((..((((((.......................)))))).....)))))......(((...............)))..................................................................
.................................................................................................98....................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189784SRR189782SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
TAX577579(Rovira)
total RNA. (breast)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
..........................................................................................................................................................................TCATTTATTTTACCTTTTTTTTTTT.......................................................253.000.001.002.00----------------
..........................CAATTACTTTTTTTTCTAAG............................................................................................................................................................................................................202.000.002.00-----------------
...................................................................................................................................................................................TTACCTTTTTTTTCTGAC.....................................................182.000.00--1.001.00--------------
..........................................................................................................................................................................TCATTTATTTTACCTTTTTTTTTT........................................................242.000.001.00---1.00-------------
.....................................................................................................................................................................................ACCTTTTTTTTCTTCTTTAAG................................................212.000.00--1.00---1.00-----------
..........................................................................................................................................................................TCATTTATTTTACCTTTTTTTTT.........................................................232.000.00-1.00--1.00-------------
...................................................................................................................................................................................TTACCTTTTTTTTCTTCTTT...................................................202.000.00--2.00---------------
............................................................................................................................................................................ATTTATTTTACCTTTCG.............................................................171.000.001.00-----------------
..........................................................................................................................................................................TCATTTATTTTACCTTTTTTTTTTTA......................................................261.000.00------1.00-----------
.....................................................................................................................................................................................ACCTTTTTTTTCTTCTTTAA.................................................201.000.001.00-----------------
...............................................................................................................................................................................TATTTTACCTTTTTTTTCTTAG.....................................................221.000.00-1.00----------------
.....................................................................................................................................................................................ACCTTTTTTTTCTTCTTCG..................................................191.000.00------1.00-----------
..................................................................................................................................................................................................................CATGGGCATTAACAAACA......................181.000.00-------1.00----------
..........................................................................................................................................................................TCATTTATTTTACCTTTTTTGTT.........................................................231.000.00----1.00-------------
......................................................................................................................................................................TCTTTCATTTATTTTACCTTTTTTTCCT........................................................281.000.00---1.00--------------
............................................................................................................................................................ATTCTTTGGTTCTTTCTG............................................................................181.000.00---1.00--------------
................................................................................................................................................................................ATTTTACCTTTTTTTTCTTG......................................................201.000.001.00-----------------
.....................................................................................................................................................................TTCTTTCATTTATTTTACCTTTTTTTTCC........................................................291.000.00----1.00-------------
......................................................................................................................................................................TCTTTCATTTATTTTACCTTTTTTCTCT........................................................281.000.001.00-----------------
...........................AATTACTTTTTTTTCCAAT............................................................................................................................................................................................................191.000.00----1.00-------------
...................................................................................................................................................................................TTACCTTTTTTTTCTTCTTTCTG................................................231.000.00-1.00----------------
.........................ACAATTACTTTTTTTTTCTG.............................................................................................................................................................................................................201.000.00-1.00----------------
.....................................................................................................................................................................................ACCTTTTTTTTCTTCGC....................................................171.000.00--1.00---------------
.............TGATCTTTGATGACAATTACTTTTTTT..................................................................................................................................................................................................................2711.001.00----1.00-------------
.................................TTTTTTTTCTATGAGTAGA......................................................................................................................................................................................................191.000.00----1.00-------------
..............................................................................ATCTTAATATAAGTCAGTCTTTCAAGA.................................................................................................................................................271.000.00---------1.00--------
.....................................................................................................................................................................TTCTTTCATTTATTTTACCTTTTTTTTCTTTAG....................................................331.000.001.00-----------------
.................................................................................................................................................................................TTTTACCTTTTTTTTCTTCTTAAAAG...............................................261.000.00-1.00----------------
............................................................................................................................................................................ATTTATTTTACCTTTTTTTTCTTCTC....................................................261.000.00---1.00--------------
............................ATTACTTTTTTTTCTACTC...........................................................................................................................................................................................................191.000.00--1.00---------------
..................................................................................................................................................................................TTTACCTTTTTTTTCTTCTTGCTG................................................241.000.00---1.00--------------
.................................................................................................................................................................................................................GCATGGGCATTAACAAAAAA.....................201.000.00--------1.00---------
........................................................................................................................................................................................................................CATTAACAAATATAGCATCTG.............2111.001.00--------1.00---------
......................................................................................................CACTTGTCCTGGCAGGTCTTTACT............................................................................................................................2411.001.00----------1.00-------
......................................................................................................................................................................TCTTTCATTTATTTTACCTTTTTTTTCTTCCTA...................................................331.000.001.00-----------------
.........................ACAATTACTTTTTTTTCTTTTG...........................................................................................................................................................................................................221.000.001.00-----------------
..........................................................................................................................................................................TCATTTATTTTACCTTTTTTTTTTCT......................................................261.000.00----1.00-------------
...................................................................................................................................................................................TTACCTTTTTTTTCTTCTTTTT.................................................221.000.00--1.00---------------
......................................................................................................................................................................................CCTTTTTTTTCTTCTTCCCC................................................201.000.00---1.00--------------
.................................................................................................................................................................................TTTTACCTTTTTTTTCTGAGG....................................................211.000.00--1.00---------------
............................................................................................................................................................................ATTTATTTTACCTTTTTTTTCTTCTCA...................................................271.000.00---1.00--------------
.....................................................................................................................................................................................ACCTTTTTTTTCTTCTTG...................................................181.000.00-1.00----------------
............................................................................................................TCCTGGCAGGTCTTTACTCCCTCTCTT...................................................................................................................2711.001.00---------------1.00--
......................................................................................................................................................................................CCTTTTTTTTCTTCTTATTG................................................201.000.001.00-----------------
.................................................................................................................................................................TTGGTTCTTTCATTTATTAGTA...................................................................221.000.00-------------1.00----
.........................................................................................................................................................................TTCATTTATTTTACCTTTTACTG..........................................................231.000.00-------1.00----------
.........................ACAATTACTTTTTTTCTG...............................................................................................................................................................................................................181.000.00-1.00----------------
.....................................................................................................................................................................................ACCTTTTTTTTCTTCTTAAAG................................................211.000.00-1.00----------------
.........................................................................................................................................................................TTCATTTATTTTACCTTTTTG............................................................211.000.001.00-----------------
.....................................................................................................................................................................TTCTTTCATTTATTTTACCTTTTTTCTCT........................................................291.000.00-1.00----------------
......................................................................................................................................................................TCTTTCATTTATTTTACCTTTTTTTTCTTCTTA...................................................3311.001.00--------------1.00---
................................................................................................................................................................................................................................AATATAGCATCTGGAACTTT......2011.001.00------------1.00-----
....................................................................................................................................................................................TACCTTTTTTTTCTTGCC....................................................181.000.00--1.00---------------
..................................................................................................................................................................................................................CATGGGCATTAACAAATACA....................201.000.00-------1.00----------
..............................................................................................................................................................................TTATTTTACCTTTTTTTTCTTCTTAG..................................................2611.001.00---1.00--------------
............................ATTACTTTTTTTTCTATTTAA.........................................................................................................................................................................................................211.000.00------1.00-----------
...................................................................................................................................................................................TTACCTTTTTTTTCTTGG.....................................................181.000.00--1.00---------------
......................................................................................................................................................................TCTTTCATTTATTTTACCT.................................................................1920.500.50--0.50---------------
........................................................................................................................................................................................................TTTGAAGCTGCATGGGC.................................1730.330.33----------------0.33-
.......................................................................................................................................................................................................GTTTGAAGCTGCATGG...................................1640.250.25-----------------0.25

Antisense strand
TTTCTGTAATCAGTGATCTTTGATGACAATTACTTTTTTTTCTATGAGTTTTTATCCTTAAATCTGACTTCACAATGAATCTTAATATAAGTCAGTCTTTCACACTTGTCCTGGCAGGTCTTTACTCCCTCTCTTTCCTTCTTTGCCTTTCTGACAATTCTTTGGTTCTTTCATTTATTTTACCTTTTTTTTCTTCTTAGTTTGAAGCTGCATGGGCATTAACAAATATAGCATCTGGAACTTTTCTGCA
.........................................................................................................(((((..((((((.......................)))))).....)))))......(((...............)))..................................................................
.................................................................................................98....................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189784SRR189782SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
TAX577579(Rovira)
total RNA. (breast)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
.............................................................................................................................TCCCTCTCTTTCCTTTATC.......................................................................................................... 196.000.00-----6.00------------
.......................................................................................................................CTTTACTCCCTCTCTTTCTT............................................................................................................... 201.000.00-----------1.00------