ID: uc003pxe.2_intron_1_0_chr6_116944166_f.5p
GENE: RSPH4A(2)
chr6:116944116-116944365+


(10)
B-CELL
(3)
BRAIN
(10)
BREAST
(10)
CELL-LINE
(7)
CERVIX
(8)
HEART
(9)
LIVER
(2)
OTHER
(4)
SKIN
(1)
TESTES
(4)
UTERUS
(1)
XRN.ip

Sense strand
TTCTCCAGGGACATTTGGAAGGAGTTGACCAAGAATTGGAAGATGAAATAGTAAGTCACTACTACAAATTTTAATAATAAACCTTAGGATTTTATTTGGGACGAATGGCTGTGGCTTTAAATTCATACCAACTGTATTTTATAGCTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTAGACAGGCTCCCAGGCTTGGAGTACAATGGCGTGATCTTGGCTCACTGCAGCCTCTGCCTCTCAGGGTCAAGCA
..............................................................................................((((((.....(((.(((((........))))))))............(((((((((.........................)))))))))))))))...........................................................
....................................................................................85...........................................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
TAX577740(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040014(GSM532899)
G623N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR040024(GSM532909)
G613N. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR189782SRR553576(SRX182782)
source: Testis. (testes)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577746(Rovira)
total RNA. (breast)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
TAX577580(Rovira)
total RNA. (breast)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR040040(GSM532925)
G612N. (cervix)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
TAX577588(Rovira)
total RNA. (breast)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM532929(GSM532929)
G702N. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
TAX577742(Rovira)
total RNA. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
...........................................................................................................................................................................TGTTTAGACAGGCTCACAT............................................................19440.2515.25--13.25-6.002.752.250.251.750.25--1.001.750.250.250.751.250.25--1.501.000.25-0.25------0.250.750.500.50-----0.250.250.25-0.25-0.25--0.25----0.250.25--0.250.250.25-0.250.25----
...........................................................................................................................................................................TGTTTAGACAGGCTCACA.............................................................18425.7515.25--7.00-3.251.751.250.501.250.75--0.500.75-0.75-0.500.500.750.50-0.250.50--------0.25-0.250.250.250.500.250.500.25-----0.25-0.250.25-0.250.25-0.25---0.25------0.250.250.25-
...........................................................................................................................................................................TGTTTAGACAGGCTC................................................................15415.2515.25--4.50-1.000.750.253.501.003.00-----0.75----------------------0.25--------------0.25---------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTTTACC................................................................................2812.000.009.003.00-------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGTTTCC.............................................................................296.000.006.00--------------------------------------------------------------------
.........................................................................................TTTTATTTGGGACGAAAAAA.............................................................................................................................................206.000.00----------3.003.00---------------------------------------------------------
....................................................................................................................................................TTTTGTTTTGTTTTGTTTTGTTTTGTTTACG.......................................................................314.000.001.00--3.00-----------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGTTACG.............................................................................293.000.00---3.00-----------------------------------------------------------------
....................................................................................................................................................................TTTGTTTTGTTTAGACACC...................................................................193.000.003.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGCA................................................................................263.000.00-3.00-------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGTTCTG.............................................................................293.000.001.00--2.00-----------------------------------------------------------------
..................................................................................................................................................TGTTTTGTTTTGTTTTGTTTTGTTTTGTTCGC........................................................................322.000.002.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTTCGG...............................................................................272.000.002.00--------------------------------------------------------------------
.........................................................................................................................................................TTTTGTTTTGTTTTGTTTTGTTTAGAGC.....................................................................282.000.001.001.00-------------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTTTC..................................................................................262.000.00-2.00-------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTAGGG..................................................................................242.000.002.00--------------------------------------------------------------------
.....................................................................................................................................................................................................................TTGGCTCACTGCAGCCTCTGCCTGGGT..........272.000.002.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTCAG..................................................................................242.000.002.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGTTTTTGG...........................................................................312.000.002.00--------------------------------------------------------------------
...................................................................................................................................................GTTTTGTTTTGTTTTGTTTTGTTTTGTTCATC.......................................................................322.000.002.00--------------------------------------------------------------------
...................................................................................................................................................GTTTTGTTTTGTTTTGTTTTGTTTTGTTCACG.......................................................................321.000.00---1.00-----------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTCGC................................................................................261.000.00-1.00-------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTCTGG.................................................................................251.000.001.00--------------------------------------------------------------------
..................................................................................................................................................TGTTTTGTTTTGTTTTGTTTTGTTTTGTTCAC........................................................................321.000.001.00--------------------------------------------------------------------
..................................................................................................................................................................................................................ATCTTGGCTCACTGCAGCCTCTGCCTTGGG..........301.000.001.00--------------------------------------------------------------------
....................................................................................................................................................TTTTGTTTTGTTTTGTTTTGTTTTGTTTAGGCT.....................................................................331.000.00-1.00-------------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTTCTG....................................................................................241.000.00-1.00-------------------------------------------------------------------
.........................................................................................................................................................................................................................CTCACTGCAGCCTCTGCCCAGG...........221.000.00-1.00-------------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTTTACCT...............................................................................291.000.001.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGTTTTGGTT..........................................................................321.000.001.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTCTGC.................................................................................251.000.001.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTGATC................................................................................261.000.001.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGTGGC..............................................................................281.000.00-1.00-------------------------------------------------------------------
............................................................................................................................................ATAGCTTGTTTTGTTTTGTTTTGTC.....................................................................................251.000.001.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGTTCCC.............................................................................291.000.001.00--------------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTGTGG......................................................................................221.000.00-1.00-------------------------------------------------------------------
...........................................................................................................................................................................TGTTTAGACAGGCTCAT..............................................................1741.0015.25--0.25-----0.25----0.25------------------------------0.25------------------------
...............................................................................................................................................GCTTGTTTTGTTTTGTTTTGTTTTCTCC...............................................................................281.000.001.00--------------------------------------------------------------------
......................................................................................................................................................................................................................TGGCTCACTGCAGCCTCTGCCTCAGGC.........271.000.001.00--------------------------------------------------------------------
...............................................................................................................................................GCTTGTTTTGTTTTGTTTTGTTTCC..................................................................................251.000.00-1.00-------------------------------------------------------------------
.....................................................................................................................................................................................................................TTGGCTCACTGCAGCCTCTGCCTCTCCGG........291.000.001.00--------------------------------------------------------------------
...........CATTTGGAAGGAGTTAGC.............................................................................................................................................................................................................................181.000.00----------------------------1.00----------------------------------------
............................................................ACTACAAATTTTAATATTG...........................................................................................................................................................................191.000.00---1.00-----------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGCC................................................................................261.000.001.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGTTTCCA............................................................................301.000.00-1.00-------------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTTTGTTTTGTG...........................................................................331.000.001.00--------------------------------------------------------------------
..........................................................................................................................................................................................................................TCACTGCAGCCTCTGCCCGT............201.000.00-----------------------------1.00---------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTACC................................................................................261.000.001.00--------------------------------------------------------------------
.......................................................................................................................................................TGTTTTGTTTTGTTTTGTTTTGTTTAGCTT.....................................................................301.000.001.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGGC................................................................................261.000.001.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGTTTCTGG...........................................................................311.000.001.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGGGC...............................................................................271.000.001.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTCTTC...............................................................................271.000.00-1.00-------------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTTTGG....................................................................................241.000.00-1.00-------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGGAG....................................................................................221.000.00-1.00-------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGTTTCCCC...........................................................................311.000.001.00--------------------------------------------------------------------
...........................................................................................................................................................................TGTTTAGACAGGCTCCCC.............................................................181.000.00-------------------------------1.00-------------------------------------
............................................................................................................................................................................GTTTAGACAGGCTCCCATC...........................................................191.000.00------------1.00--------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGTTTGGC............................................................................301.000.001.00--------------------------------------------------------------------
...................................................................................................................................................GTTTTGTTTTGTTTTGTTTTGTTTTGTTCGCT.......................................................................321.000.001.00--------------------------------------------------------------------
...................................................................................................................................................GTTTTGTTTTGTTTTGTTTTGTTTTGTTTACG.......................................................................321.000.001.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTATC................................................................................261.000.00-1.00-------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGGCT...............................................................................271.000.001.00--------------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTTTAAC................................................................................281.000.001.00--------------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTTTTG....................................................................................241.000.00-1.00-------------------------------------------------------------------
................................................................................................................................................................................................................TGATCTTGGCTCACTGCAGCCTCTGCCCCCC...........311.000.00-1.00-------------------------------------------------------------------
..................................................................................................................................................................................................................ATCTTGGCTCACTGCAGCCTCTGCCTCGGG..........301.000.00-1.00-------------------------------------------------------------------
.................................................................................................................................................TTGTTTTGTTTTGTTTTGTTTTGTTTTGTTGGC........................................................................331.000.001.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGGTTA..............................................................................281.000.001.00--------------------------------------------------------------------
......................AGTTGACCAAGAATTGGAAG................................................................................................................................................................................................................2011.001.00--------------------------1.00------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTTTGTTTTGTC...........................................................................331.000.00-1.00-------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGTTTTCG............................................................................301.000.001.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGAC................................................................................261.000.001.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTGCCC................................................................................261.000.001.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGTTTCGC............................................................................301.000.001.00--------------------------------------------------------------------
................................................................................................................................................................................................................TGATCTTGGCTCACTGCAGCCCCGG.................251.000.00-1.00-------------------------------------------------------------------
.....................................................................................................................................................................................................GTACAATGGCGTGATAGA...................................181.000.00---------------------------1.00-----------------------------------------
...................................................................................................................................................................................................................TCTTGGCTCACTGCAGCCTCTGAAA..............251.000.00------------------------------1.00--------------------------------------
........................................................................................................................................................................................................................GCTCACTGCAGCCTCTGCCTCAAA..........241.000.00----------------1.00----------------------------------------------------
....................................................................................................................................................TTTTGTTTTGTTTTGTTTTGTTTTGTTTAGTGT.....................................................................331.000.00---1.00-----------------------------------------------------------------
.............................................................................................................................................................................TTTAGACAGGCTCCCAT............................................................1711.001.00--1.00------------------------------------------------------------------
.........................................................................................................................................................................................................AATGGCGTGATCTTGTTT...............................181.000.00-------------------1.00-------------------------------------------------
........................................................................................................................................................................................................CAATGGCGTGATCTTGGCATT.............................211.000.00--------------------1.00------------------------------------------------
........................................................................................................................................................................................................................GCTCACTGCAGCCTCTGCCCTGG...........231.000.00-1.00-------------------------------------------------------------------
..................................................................................................................................................................................................................ATCTTGGCTCACTGCAGCCTCTGCCATCC...........291.000.001.00--------------------------------------------------------------------
...............................................................................................................................................GCTTGTTTTGTTTTGTTGG........................................................................................191.000.00-1.00-------------------------------------------------------------------
............................................................................................................................................................................................................................ACTGCAGCCTCTGCCTCGGGG.........211.000.00-1.00-------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTCGGG.....................................................................................211.000.001.00--------------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTTTAC.................................................................................271.000.001.00--------------------------------------------------------------------
................................................................................................................................................CTTGTTTTGTTTTGTTTTGTTTTGTTTTGGC...........................................................................311.000.001.00--------------------------------------------------------------------
........................................................................................................................................................................................................................GCTCACTGCAGCCTCTGCCTCGGGT.........251.000.00-1.00-------------------------------------------------------------------
................................................................................................................................................................TTGTTTTGTTTTGTTTAGAAGAG...................................................................231.000.001.00--------------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTTTGTT................................................................................2821.001.00-1.00-------------------------------------------------------------------
.............................................................................................................................................................................TTTAGACAGGCTCCCA.............................................................1611.001.00------1.00--------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTTTGTTTTT.............................................................................311.000.00-1.00-------------------------------------------------------------------
........................................................................................................................................................GTTTTGTTTTGTTTTGTTTTGTTTACG.......................................................................271.000.001.00--------------------------------------------------------------------
........................................................................................................................................................................................................CAATGGCGTGATCTTGGCTCAAA...........................231.000.00------------------1.00--------------------------------------------------
...........................................................................................................................................................................TGTTTAGACAGGCTCCCCT............................................................191.000.00-------------------------1.00-------------------------------------------
..........................................................................................................................................................................................................ATGGCGTGATCTTGGCTCACTGCAGCCC....................281.000.001.00--------------------------------------------------------------------
.....................................................................................................................................................................................................................TTGGCTCACTGCAGCCTCTGCCTAGGG..........271.000.001.00--------------------------------------------------------------------
...........................................................................................................................................................................TGTTTAGACAGGCTCACT.............................................................1840.7515.25-----0.25------------------0.25-------------------------------------------0.25
...........................................................................................................................................................................TGTTTAGACAGGCTCAA..............................................................1740.7515.25--------------------------------0.25---0.25-------------------------0.25------
...........................................................................................................................................................................TGTTTAGACAGGCTCGC..............................................................1740.5015.25--0.25-0.25----------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTTTGTTTTG.............................................................................3120.500.500.50--------------------------------------------------------------------
.........................................................................................................................................................................................................................CTCACTGCAGCCTCTGCCTCTCAGGGT......2730.330.330.33--------------------------------------------------------------------
.............................................................................................................................................................................TTTAGACAGGCTCCC..............................................................1560.330.33--0.17-0.17----------------------------------------------------------------
............................................................................................................................................................................GTTTAGACAGGCTCCC..............................................................1630.330.33--0.33------------------------------------------------------------------
...........................................................................................................................................................................TGTTTAGACAGGCTCACAG............................................................1940.2515.25---------------------------------------------------------0.25-----------
...........................................................................................................................................................................TGTTTAGACAGGCTCAAA.............................................................1840.2515.25-----------------------0.25---------------------------------------------
...........................................................................................................................................................................TGTTTAGACAGGCTCATA.............................................................1840.2515.25-----------------------0.25---------------------------------------------
...........................................................................................................................................................................TGTTTAGACAGGCTCATGT............................................................1940.2515.25------------0.25--------------------------------------------------------
...........................................................................................................................................................................TGTTTAGACAGGCTCTCAT............................................................1940.2515.25------0.25--------------------------------------------------------------
...........................................................................................................................................................................TGTTTAGACAGGCTCACTA............................................................1940.2515.25--------------------------------0.25------------------------------------
...........................................................................................................................................................................TGTTTAGACAGGCTCACTT............................................................1940.2515.25----------------------0.25----------------------------------------------
...........................................................................................................................................................................TGTTTAGACAGGCTCTTA.............................................................1840.2515.25----------------------------------------0.25----------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTTTG..................................................................................2650.200.20-0.20-------------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTTTGGG................................................................................2850.200.20-0.20-------------------------------------------------------------------
.............................................................................................................................................TAGCTTGTTTTGTTTTGTTTTGTTT....................................................................................2550.200.20-0.20-------------------------------------------------------------------
..................................................................AATTTTAATAATAAACC.......................................................................................................................................................................1760.170.17---0.17-----------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTTCACC................................................................................2870.140.140.14--------------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTT....................................................................................2470.140.14-0.14-------------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTTC...................................................................................2570.140.140.14--------------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTTAG..................................................................................2670.140.140.14--------------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTTAGAG................................................................................2870.140.140.14--------------------------------------------------------------------
..............................................................................................................................................AGCTTGTTTTGTTTTGTTTTGTTTCGTT................................................................................2870.140.140.14--------------------------------------------------------------------

Antisense strand
TTCTCCAGGGACATTTGGAAGGAGTTGACCAAGAATTGGAAGATGAAATAGTAAGTCACTACTACAAATTTTAATAATAAACCTTAGGATTTTATTTGGGACGAATGGCTGTGGCTTTAAATTCATACCAACTGTATTTTATAGCTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTAGACAGGCTCCCAGGCTTGGAGTACAATGGCGTGATCTTGGCTCACTGCAGCCTCTGCCTCTCAGGGTCAAGCA
..............................................................................................((((((.....(((.(((((........))))))))............(((((((((.........................)))))))))))))))...........................................................
....................................................................................85...........................................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
TAX577740(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040014(GSM532899)
G623N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR040024(GSM532909)
G613N. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR189782SRR553576(SRX182782)
source: Testis. (testes)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577746(Rovira)
total RNA. (breast)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
TAX577580(Rovira)
total RNA. (breast)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR040040(GSM532925)
G612N. (cervix)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
TAX577588(Rovira)
total RNA. (breast)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM532929(GSM532929)
G702N. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
TAX577742(Rovira)
total RNA. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
....................................................................................................................TTAAATTCATACCAACCT.................................................................................................................... 182.000.00--------------2.00------------------------------------------------------
..............................................................................................................................................................................................................CGTGATCTTGGCTCACTGCAGCCTACAG................ 282.000.002.00--------------------------------------------------------------------
............................................................................................................................................................................................................................ACTGCAGCCTCTGCCTCGC........... 191.000.00------------------------1.00--------------------------------------------
...............................................................................................................................................GCTTGTTTTGTTTTGTTTTGTTTTGTTAAC............................................................................. 301.000.00---1.00-----------------------------------------------------------------
......................................................................................................................................................................................................................TGGCTCACTGCAGCCTCTGCCTCTCG.......... 261.000.001.00--------------------------------------------------------------------
.....................................................................................................................................................................................................................TTGGCTCACTGCAGCCTCTGACC.............. 231.000.00-1.00-------------------------------------------------------------------