ID: uc003pva.1_intron_12_0_chr6_111678329_r.5p
GENE: REV3L(4)
chr6:111679825-111680074-


(1)
B-CELL 		(8)
BRAIN 		(8)
BREAST 		(7)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(3)
HELA 		(4)
OTHER 		(3)
SKIN 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
ACTCACAGGTGTAATAGTGATTGATAAAGACAAGACAGTTTTCAGTCAAGGTATTGTCCATTTTTATTAATGATATACCTGCCCACTCTAGGGTGAATGTTTTAATGGGGAATTCCTGTGCTGAAGATCTAATCTAAGCAAGCATGATGACTCTTTTCTAAAATGTTTGCTGAGGTAGGGGTAGGAGATTGTGTATAACTTTGTCCTAGATTTATTATTCTTACTTGGATTAGTCAGAAGCAGCCAGGCA
........................................................................................................................................(((((((((...((......))....)))))))))...............................................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR189783GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040036(GSM532921)
G243N. (cervix)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577590(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040038(GSM532923)
G531N. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577743(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
.................................................................................................................................................................................GGGGTAGGAGATTGTATAG......................................................1920.000.0014.002.00---1.00----1.00--------1.00------------------1.00-
................................................................................................................................................................................AGGGGTAGGAGATTGTATAG......................................................207.000.002.00-1.00-------1.00-1.00-------1.00--------------1.00----
.................................................................................................................................................................................GGGGTAGGAGATTGTATAA......................................................194.000.004.00---------------------------------------
............AATAGTGATTGATAAAGA............................................................................................................................................................................................................................1813.003.00----3.00-----------------------------------
..............................................................................................GAATGTTTTAATGGGGAATTCCTGTGCTGAAGATCTAATCTAAGCAAGCATGATGACTCTTTTC............................................................................................6413.003.00-------3.00--------------------------------
................................................................................................................................................................................AGGGGTAGGAGATTGTGTAGTT....................................................222.000.00---------------------1.00--1.00---------------
............................................................................................................................................AGCATGATGACTCTTAAT............................................................................................182.000.00--------2.00-------------------------------
....................................................................................................................TGTGCTGAAGATCTAATCTAAGCAAGCATGATGA....................................................................................................3412.002.00-------------2.00--------------------------
.................................................................................................................................................................................GGGGTAGGAGATTGTAAAA......................................................192.000.002.00---------------------------------------
................................................................................................................................................................................AGGGGTAGGAGATTGTGCT.......................................................191.000.00-----------------------1.00----------------
..........................................................................................................GGGGAATTCCTGTGCCCGA.............................................................................................................................191.000.00------------------------------1.00---------
..................GATTGATAAAGACAAAAGA.....................................................................................................................................................................................................................191.000.00-----------------------------1.00----------
.................................................................................................................................................................................GGGGTAGGAGATTGTACAG......................................................191.000.001.00---------------------------------------
................................................................................................................................................................................AGGGGTAGGAGATTGTAT........................................................181.000.00------1.00---------------------------------
.................................................................................................................................................................................GGGGTAGGAGATTGTGTAG......................................................191.000.001.00---------------------------------------
................................................................................................................................................................................AGGGGTAGGAGATTGTGAAG......................................................201.000.00---------------------------1.00------------
................................................................................................................................................................................AGGGGTAGGAGATTGTTTAG......................................................201.000.001.00---------------------------------------
.................................................................................................................................................................................GGGGTAGGAGATTGTGTAGTT....................................................211.000.00---1.00------------------------------------
................................................................................................................................................................................AGGGGTAGGAGATTGTCACA......................................................201.000.00-----1.00----------------------------------
.................................................................................................................................................................................GGGGTAGGAGATTGTAGAA......................................................191.000.001.00---------------------------------------
.................................................................................................................................................................................GGGGTAGGAGATTGTGTAGGT....................................................211.000.00---1.00------------------------------------
.................................................................................................................................................................................GGGGTAGGAGATTGTGTAGCTT...................................................221.000.00---1.00------------------------------------
................................................................................................................................................................................AGGGGTAGGAGATTGTGTGGGT....................................................221.000.00-----------1.00----------------------------
................................................................................................................................................................................AGGGGTAGGAGATTGTATA.......................................................191.000.00--1.00-------------------------------------
...........TAATAGTGATTGATAAAGACAAGAT......................................................................................................................................................................................................................251.000.00---------1.00------------------------------
................................................................................................................................................................................AGGGGTAGGAGATTGTGTAGGT....................................................221.000.00-1.00--------------------------------------
................................................................................................................................................................................AGGGGTAGGAGATTGGAT........................................................181.000.00---------------------------------1.00------
................................................................................................................................................................................AGGGGTAGGAGATTGTGTTGG.....................................................211.000.00--------------------------1.00-------------
.................................................................................................................................................................................GGGGTAGGAGATTGTTTAG......................................................191.000.00-1.00--------------------------------------
.................................................................................................................................................................................GGGGTAGGAGATTGTAT........................................................171.000.00-------------------------1.00--------------
................................................................................................................................................................................AGGGGTAGGAGATTGTACAG......................................................201.000.001.00---------------------------------------
................................................................................................................................................................................AGGGGTAGGAGATTGTGTTGTT....................................................221.000.00--1.00-------------------------------------
................................................................................................................................................................................AGGGGTAGGAGATTGTCCC.......................................................191.000.00-------------------------------1.00--------
................................................................................................................................................................................AGGGGTAGGAGATTGTA.........................................................171.000.00------1.00---------------------------------
...........TAATAGTGATTGATAAAGACAAGAC......................................................................................................................................................................................................................2511.001.00---------1.00------------------------------
.......................ATAAAGACAAGACAGTAC.................................................................................................................................................................................................................181.000.00--------------1.00-------------------------
................................................................................................................................................................................................................................TTGGATTAGTCAGAAGTA........181.000.00-----------1.00----------------------------
................................................................................................................................................................................AGGGGTAGGAGATTGGGT........................................................181.000.00-----------------1.00----------------------
...CACAGGTGTAATAGTGATTGATAAAGACAAGA.......................................................................................................................................................................................................................3211.001.00-------------------------------------1.00--
................................................................................................................................................................................AGGGGTAGGAGATTGTATAA......................................................201.000.00------1.00---------------------------------
...................................CAGTTTTCAGTCAAGATG.....................................................................................................................................................................................................181.000.00--------------------------------1.00-------
...................................................................................................................................................................................GGTAGGAGATTGTGTAGT.....................................................181.000.00------------1.00---------------------------
...................................................................................................................................................................................GGTAGGAGATTGTGTAGTT....................................................191.000.00----------------------------1.00-----------
.................................................................................................................................................................................GGGGTAGGAGATTGTGTAGT.....................................................201.000.00----------------------------------1.00-----
.................................................................................................................................................................................GGGGTAGGAGATTGTATA.......................................................181.000.00----------------------1.00-----------------
..................................................................................................................................................................................GGGTAGGAGATTGTGTAGTT....................................................201.000.00------------------1.00---------------------
.................................................................................................................................................................................GGGGTAGGAGATTGTCTAG......................................................191.000.001.00---------------------------------------
................................................................................................................................................................................AGGGGTAGGAGATTGTAG........................................................181.000.00-----1.00----------------------------------
.................................................................................................................................................................................GGGGTAGGAGATTGTGCTG......................................................191.000.00----------------1.00-----------------------
..................................ACAGTTTTCAGTCAAG........................................................................................................................................................................................................1640.250.25---------------------------------------0.25

Antisense strand
ACTCACAGGTGTAATAGTGATTGATAAAGACAAGACAGTTTTCAGTCAAGGTATTGTCCATTTTTATTAATGATATACCTGCCCACTCTAGGGTGAATGTTTTAATGGGGAATTCCTGTGCTGAAGATCTAATCTAAGCAAGCATGATGACTCTTTTCTAAAATGTTTGCTGAGGTAGGGGTAGGAGATTGTGTATAACTTTGTCCTAGATTTATTATTCTTACTTGGATTAGTCAGAAGCAGCCAGGCA
........................................................................................................................................(((((((((...((......))....)))))))))...............................................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR189783GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040036(GSM532921)
G243N. (cervix)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577590(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040038(GSM532923)
G531N. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577743(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
.........TGTAATAGTGATTGATT................................................................................................................................................................................................................................ 171.000.00--------------1.00-------------------------
.....................................................................................................................................................................................................ATAAATCTAGGACAAAGT................................... 1811.001.00------------------------------------1.00---
....................................AGTTTTCAGTCAAGGTG..................................................................................................................................................................................................... 171.000.00---------------1.00------------------------