ID: uc003pqv.1_intron_1_0_chr6_105406162_f.3p
GENE: LIN28B(2)
chr6:105473973-105474222+


(1)
AGO2.ip
(6)
B-CELL
(14)
BRAIN
(16)
BREAST
(23)
CELL-LINE
(5)
CERVIX
(1)
FIBROBLAST
(2)
HELA
(1)
KIDNEY
(7)
LIVER
(2)
OTHER
(4)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
GCCTTAAAAATTTTTTTCTCCCACTGCCAGTATTGCAAAAAGAAACTTTAAAATGGTATATGTTTCACTGAACTTAAGACTTTATACTTTTGTAATGCATGACAGAGTATCTTTCTTTTTTAAAATTATAGAGATAATTTATAAAGCAATGATAATTTTAATCTCTCTTTTTCTCCCCCACCCTCTTCTGCTCTTTACAGAGCAAACTATTCATGGAAGGATTTAGAAGCCTAAAAGAAGGAGAACCAGT
................................................................................................................................................((((..((...............................))...))))..........................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormTAX577742(Rovira)
total RNA. (breast)
SRR189782SRR029131(GSM416760)
MCF7. (cell line)
SRR189784SRR037937(GSM510475)
293cand2. (cell line)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189787GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR029127(GSM416756)
A549. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR038856(GSM458539)
D11. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR040018(GSM532903)
G701N. (cervix)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR191477(GSM715587)
2genomic small RNA (size selected RNA from to. (breast)
SRR037936(GSM510474)
293cand1. (cell line)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577740(Rovira)
total RNA. (breast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
GSM532879(GSM532879)
G659N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
TAX577743(Rovira)
total RNA. (breast)
GSM532872(GSM532872)
G652T. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
..........................................................................................................................................TTATAAAGCAATGATACTGA............................................................................................20103.000.00--14.00-1.004.008.00--2.002.003.003.00-2.003.003.003.003.00-2.00-1.00-3.003.001.003.001.00-2.002.00-1.00-2.002.00-1.001.001.00-1.001.00-1.00-1.001.001.00---1.00--1.001.00---1.001.001.001.001.00-1.00--1.001.001.001.00-1.00-1.00-1.001.00-1.001.001.00---
..........................................................................................................................................TTATAAAGCAATGATACTG.............................................................................................1944.000.00-23.002.0011.001.00--1.00-1.00-1.00-----------1.00--1.00--------------1.00-----------------1.00----------------------------
..........................................................................................................................................TTATAAAGCAATGATGATT.............................................................................................1925.000.0025.00---------------------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATAATGATT..........................................................................................2217.000.00----1.001.00---1.00--1.002.00--1.00--3.001.00-1.00---1.00-------1.00---------1.00-1.00---------------------1.00-------------------
............................................................................................................................................................................................................AACTATTCATGGAAGGATTTAGAAGC....................2616.006.00--------6.00-------------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATAATGAT...........................................................................................216.000.00----1.002.00-------1.00-----1.00-------------1.00------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATACTTA............................................................................................206.000.00--2.00-------2.00---1.00----------------------------------------------------------------------1.00--
..........................................................................................................................................TTATAAAGCAATGATACT..............................................................................................186.000.00--1.00----1.00---1.00-------------------------1.00----------------1.00-----1.00---------------------------
...........................................................................................................................................TATAAAGCAATGATACTG.............................................................................................185.000.00----5.00-----------------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATTAGA.............................................................................................193.000.00-------2.00------------------------------------------------------------------1.00-------------
..........................................................................................................................................TTATAAAGCAATGATACTGC............................................................................................202.000.00------1.00---------------------1.00-----------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATATTGA............................................................................................202.000.00--1.00---------1.00---------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATACCGA............................................................................................202.000.00---------------1.00------1.00-----------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATAGA..............................................................................................182.000.00-------2.00--------------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATAATTATT..........................................................................................222.000.00-----1.00----------------------------1.00-----------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATTGA..............................................................................................182.000.00-1.00-----1.00--------------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATGAA..............................................................................................182.000.00--------------------------------1.00----1.00--------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATATTT.............................................................................................192.000.00--1.00-1.00-----------------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATACTTT............................................................................................201.000.00------------------------------------------------------------------------------1.00---------
..........................................................................................................................................................................................................CAAACTATTCATGGAAGGATTTAGAAGC....................2811.001.00--------1.00-------------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATACGG.............................................................................................191.000.00-1.00--------------------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATAATCAT...........................................................................................211.000.00---------1.00------------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATAATTGTT..........................................................................................221.000.00------------------1.00---------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATAATGAA...........................................................................................211.000.00---------1.00------------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATAACTG............................................................................................201.000.00---1.00------------------------------------------------------------------------------------
............................................................................................................................................................................................................AACTATTCATGGAAGGATTTAGAAGCCTAAAAG.............3311.001.00-----------------------------1.00----------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATAATGAC...........................................................................................211.000.00-----1.00----------------------------------------------------------------------------------
..........................................................................................................................................................................................................CAAACTATTCATGGAAGGATTTAGAA......................2611.001.00--------1.00-------------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATTGC..............................................................................................181.000.00-------1.00--------------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATGGTT.............................................................................................191.000.001.00---------------------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATTGAT.............................................................................................191.000.00-----------------1.00----------------------------------------------------------------------
...............................................................TTCACTGAACTTAAGC...........................................................................................................................................................................161.000.00----------------------------------------------------1.00-----------------------------------
......................................................................................................................................................................................................................GGAAGGATTTAGAAGGGAG.................191.000.00--------------------------------------------------1.00-------------------------------------
..........................................................................................................................................................................................................CAAACTATTCATGGAAG...............................1711.001.00-1.00--------------------------------------------------------------------------------------
...........................................................................................................................................TATAAAGCAATGATAATGATT..........................................................................................211.000.00----1.00-----------------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATACTGT............................................................................................201.000.00----------1.00-----------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATAATGA............................................................................................201.000.00-----1.00----------------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATACTT.............................................................................................191.000.00-----------------------1.00----------------------------------------------------------------
...................................................................................................................................................................................................................CATGGAAGGATTTAGAAGCCTG.................221.000.00----------------------------------------------------------1.00-----------------------------
..........................................................................................................................................TTATAAAGCAATGATAATGGTT..........................................................................................221.000.00--------------------1.00-------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATAGTGA............................................................................................201.000.00-------------1.00--------------------------------------------------------------------------
...................................................................................................................................................................................ACCCTCTTCTGCTCTATA.....................................................181.000.00----------------------------------------------------------------------------1.00-----------
..........................................................................................................................................TTATAAAGCAATGATAAGT.............................................................................................191.000.001.00---------------------------------------------------------------------------------------
.......................................................................................................................................................ATAATTTTAATCTCTCCCAG...............................................................................201.000.00---------------------------------------------------1.00------------------------------------
..................................................................................................................................................................................................................TCATGGAAGGATTTAGAAGCCCAA................241.000.00-----------------------------1.00----------------------------------------------------------
........................................................................................................................................................................TTTTCTCCCCCACCCGAC................................................................181.000.00---------------------------------------------------------------------1.00------------------
..........................................................................................................................................TTATAAAGCAATGATAATGTGT..........................................................................................221.000.00----------1.00-----------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATAATAT............................................................................................201.000.00----------------------1.00-----------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATAATAATT..........................................................................................221.000.00-----1.00----------------------------------------------------------------------------------
.......................................................................................................................................................................................................................GAAGGATTTAGAAGCCTAAAAGAAGGA........2711.001.00---------------------------------------------------------------------------------1.00------
..........................................................................................................................................TTATAAAGCAATGATAATGCTT..........................................................................................221.000.00---------1.00------------------------------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATGCT..............................................................................................181.000.00--------------------------------1.00-------------------------------------------------------
..........................................................................................................................................TTATAAAGCAATGATGTA..............................................................................................181.000.00-------1.00--------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGGAAGGATTTAGAAGCC...................1820.500.50--------------------------------------------------------------------------------------0.50-

Antisense strand
GCCTTAAAAATTTTTTTCTCCCACTGCCAGTATTGCAAAAAGAAACTTTAAAATGGTATATGTTTCACTGAACTTAAGACTTTATACTTTTGTAATGCATGACAGAGTATCTTTCTTTTTTAAAATTATAGAGATAATTTATAAAGCAATGATAATTTTAATCTCTCTTTTTCTCCCCCACCCTCTTCTGCTCTTTACAGAGCAAACTATTCATGGAAGGATTTAGAAGCCTAAAAGAAGGAGAACCAGT
................................................................................................................................................((((..((...............................))...))))..........................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormTAX577742(Rovira)
total RNA. (breast)
SRR189782SRR029131(GSM416760)
MCF7. (cell line)
SRR189784SRR037937(GSM510475)
293cand2. (cell line)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189787GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR029127(GSM416756)
A549. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR038856(GSM458539)
D11. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR040018(GSM532903)
G701N. (cervix)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR191477(GSM715587)
2genomic small RNA (size selected RNA from to. (breast)
SRR037936(GSM510474)
293cand1. (cell line)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577740(Rovira)
total RNA. (breast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
GSM532879(GSM532879)
G659N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
TAX577743(Rovira)
total RNA. (breast)
GSM532872(GSM532872)
G652T. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.........................................................................................................AGTATCTTTCTTTTTGCTA.............................................................................................................................. 195.000.00---------------------4.00--------------------------------------------1.00---------------------
..................................................................................................................................................................CTCTCTTTTTCTCCCCCACTGC.................................................................. 221.000.00-------------------------------------------------------1.00--------------------------------
.........................................................................................................................................................................TTTCTCCCCCACCCTCCT............................................................... 181.000.00--------------1.00-------------------------------------------------------------------------
.........................................................................................................................................................................TTTCTCCCCCACCCTCTTCGT............................................................ 211.000.00------1.00---------------------------------------------------------------------------------
.............................................................................................................................................TAAAGCAATGATAATTTCAAG........................................................................................ 211.000.00-----------------------1.00----------------------------------------------------------------
........................................................................................................................................................................AGAGGGTGGGGGAGAAAA................................................................ 1860.170.17---------------------------------------------------------------------------------------0.17
........................................................................................................................................................................TTTTCTCCCCCACCCTCTTTT............................................................. 210.170.00---------------------------------------------------------------------------------------0.17