ID: uc003pqu.1_intron_21_0_chr6_105298872_r.3p
GENE: HACE1(2)
chr6:105298822-105299071-


(1)
AGO1.ip 		(1)
AGO2.ip 		(1)
BRAIN 		(1)
BREAST 		(13)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(1)
HELA 		(2)
OTHER 		(6)
SKIN

Sense strand
CAGGAGAATTGCTTGAACCAGGGAGGTGGAGGTTGCAGTGAGCCAAGATCTCGCCACTGTACTCCAGCCTGGTGACAGAGCAAGACTCTTGTCTCAACAAACAAACAAACAAACAGAGCAGCTAAAGAGTTGTTAACTTGATTTATTATGTTTTTAAAAACTTTTTTTACACTTGATTCCTCATTTTTATTTTGGCATAGGTCTGTTTCTGAACTACTATCAAATTCAAAATTTGATGTCAATTATGCAT
..................................................................(((((....))).)).((((....))))....(((((((.((((((....(((((((....)))))))...))).))).)).))))).................................................................................................
................................................................65................................................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040029(GSM532914)
G026T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM532879(GSM532879)
G659N. (cervix)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................................................................................TGATTTATTATGTTTTTTGTT...........................................................................................2123.000.0023.00---------------------------
..........................................................................................................................................TGATTTATTATGTTTTTTGT............................................................................................2013.000.0013.00---------------------------
..........................................................................................................................................TGATTTATTATGTTTTTTTT............................................................................................208.000.008.00---------------------------
..........................................................................................................................................TGATTTATTATGTTTTGTGT............................................................................................207.000.006.00-----------1.00---------------
..........................................................................................................................................TGATTTATTATGTTTTTTTTT...........................................................................................217.000.007.00---------------------------
..........................................................................................................................................TGATTTATTATGTTTTGTTG............................................................................................206.000.005.00--------------------1.00------
..........................................................................................................................................TGATTTATTATGTTTTTTG.............................................................................................194.000.004.00---------------------------
..........................................................................................................................................TGATTTATTATGTTTTGTT.............................................................................................193.000.003.00---------------------------
...................................................................................................................................................................................................................AACTACTATCAAATTCAAAATTTG...............2412.002.00-------2.00--------------------
.....................................................................TGGTGACAGAGCAAGACTCAGCC..............................................................................................................................................................232.000.00--2.00-------------------------
..........................................................................................................................................TGATTTATTATGTTTTTTGTA...........................................................................................212.000.002.00---------------------------
..........................................................................................................................................TGATTTATTATGTTTTGTTT............................................................................................202.000.002.00---------------------------
..........................................................................................................................................TGATTTATTATGTTTTTTGGT...........................................................................................212.000.001.00---1.00-----------------------
.............TGAACCAGGGAGGTGGAGGTTGCAGTCTG................................................................................................................................................................................................................291.000.00----------------------1.00-----
..........................TGGAGGTTGCAGTGAGCCAAGCTAG.......................................................................................................................................................................................................251.000.00-1.00--------------------------
..........................................................................................................................................TGATTTATTATGTTTGTTT.............................................................................................191.000.001.00---------------------------
.............................................................................................................................................TTTATTATGTTTTTAAATTTG........................................................................................211.000.00---------------------------1.00
................................................TCTCGCCACTGTACTCTG........................................................................................................................................................................................181.000.00---------1.00------------------
................................................................................................................................................................................................TGGCATAGGTCTGTTTCTG.......................................1911.001.00--1.00-------------------------
..........................................................................................................................................TGATTTATTATGTTTTGTGG............................................................................................201.000.00------------------1.00---------
...........................................................TACTCCAGCCTGGTGACAGAGCAAGACCAAC................................................................................................................................................................311.000.00--1.00-------------------------
................ACCAGGGAGGTGGAGGTTGCAGTGAGCCCTG...........................................................................................................................................................................................................311.000.00----1.00-----------------------
...GAGAATTGCTTGAACCAGGTGAT................................................................................................................................................................................................................................231.000.00-----------1.00----------------
..........................................................................................................................................TGATTTATTATGTTTTGTGA............................................................................................201.000.001.00---------------------------
...GAGAATTGCTTGAACCAGGG...................................................................................................................................................................................................................................2001.001.00---------------1.00------------
..................CAGGGAGGTGGAGGTTGAAA....................................................................................................................................................................................................................201.000.00--------------------------1.00-
..........................................................................................................................................TGATTTATTATGTTTTGT..............................................................................................181.000.001.00---------------------------
...........................................CAAGATCTCGCCACTGTACTCTG........................................................................................................................................................................................231.000.00----1.00-----------------------
.............TGAACCAGGGAGGTGG.............................................................................................................................................................................................................................1601.001.00-----------------1.00----------
.........................................................................................................................................................TTAAAAACTTTTTTTACACTTG...........................................................................2211.001.00-------------------------1.00--
..........................................................................................................................................TGATTTATTATGTTTTTAAT............................................................................................201.000.001.00---------------------------
.............TGAACCAGGGAGGTGGAGGT.........................................................................................................................................................................................................................2001.001.00-----1.00----------------------
.................CCAGGGAGGTGGAGGTTGCAGTGAGCTCTG...........................................................................................................................................................................................................301.000.00----1.00-----------------------
............TTGAACCAGGGAGGTGGA............................................................................................................................................................................................................................1801.001.00-----1.00----------------------
................ACCAGGGAGGTGGAGGTTGCAACG..................................................................................................................................................................................................................241.000.00--1.00-------------------------
..........................................................................................................................................TGATTTATTATGTTTTGGT.............................................................................................191.000.001.00---------------------------
..........................................................................................................................................TGATTTATTATGTTTTTTAA............................................................................................201.000.001.00---------------------------
................................................................................................ACAAACAAACAAACAAACAG......................................................................................................................................2001.001.00-----------------------1.00----
...........................................................TACTCCAGCCTGGTGTAG.............................................................................................................................................................................181.000.00-1.00--------------------------

Antisense strand
CAGGAGAATTGCTTGAACCAGGGAGGTGGAGGTTGCAGTGAGCCAAGATCTCGCCACTGTACTCCAGCCTGGTGACAGAGCAAGACTCTTGTCTCAACAAACAAACAAACAAACAGAGCAGCTAAAGAGTTGTTAACTTGATTTATTATGTTTTTAAAAACTTTTTTTACACTTGATTCCTCATTTTTATTTTGGCATAGGTCTGTTTCTGAACTACTATCAAATTCAAAATTTGATGTCAATTATGCAT
..................................................................(((((....))).)).((((....))))....(((((((.((((((....(((((((....)))))))...))).))).)).))))).................................................................................................
................................................................65................................................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040029(GSM532914)
G026T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM532879(GSM532879)
G659N. (cervix)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.............................................................................................TCAACAAACAAACAAACAAAATC...................................................................................................................................... 236.000.00---6.00------------------------
................................................................................................ACAAACAAACAAACAAACAGAAGAG................................................................................................................................. 254.000.00-4.00--------------------------
...............................................................................................AACAAACAAACAAACAAACAGAGG................................................................................................................................... 244.000.00-4.00--------------------------
...............................................................................................AACAAACAAACAAACAAACAGAAGG.................................................................................................................................. 253.000.00-1.002.00-------------------------
...............................................................................................AACAAACAAACAAACAAACAGACTTG................................................................................................................................. 263.000.00-3.00--------------------------
................................................................................................ACAAACAAACAAACAAACAGACTTG................................................................................................................................. 252.000.00-2.00--------------------------
..................................................................................................AAACAAACAAACAAACAGAGTGAG................................................................................................................................ 242.000.00-2.00--------------------------
...............................................................................................AACAAACAAACAAACAAACAGACCT.................................................................................................................................. 252.000.00--2.00-------------------------
...............................................................................................AACAAACAAACAAACAAACAGAAGGA................................................................................................................................. 262.000.00--2.00-------------------------
......AATTGCTTGAACCAGAG................................................................................................................................................................................................................................... 172.000.00------2.00---------------------
................................................................................................ACAAACAAACAAACAAACAGACAGG................................................................................................................................. 252.000.00-2.00--------------------------
..............................................................................................CAACAAACAAACAAACAAACAGAG.................................................................................................................................... 242.000.00-2.00--------------------------
..........................................................GTACTCCAGCCTGGTGACTCTG.......................................................................................................................................................................... 222.000.00--------2.00-------------------
....................................................................................................ACAAACAAACAAACAGACTTC................................................................................................................................. 211.000.00-1.00--------------------------
................................................................................................ACAAACAAACAAACAAACAGAGAG.................................................................................................................................. 241.000.00--1.00-------------------------
......................................................CACTGTACTCCAGCCTGGTGATTTT........................................................................................................................................................................... 251.000.00--------------------1.00-------
........................................................CTGTACTCCAGCCTGGTGACAGAGCAACAGC................................................................................................................................................................... 311.000.00-1.00--------------------------
................ACCAGGGAGGTGGAGGTTGCAGTGACCGG............................................................................................................................................................................................................. 291.000.00--1.00-------------------------
..................................................................................................AAACAAACAAACAAACAGAACCT................................................................................................................................. 231.000.00--1.00-------------------------
....................................................................CTGGTGACAGAGCAAGAAGA.................................................................................................................................................................. 201.000.00-------------------1.00--------
..................................................TCGCCACTGTACTCCAGTCTG................................................................................................................................................................................... 211.000.00--1.00-------------------------
....................................................GCCACTGTACTCCAGCCTGGTGACACCGG......................................................................................................................................................................... 291.000.00-1.00--------------------------
.................................................................................................CAAACAAACAAACAAACAGAGCAGG................................................................................................................................ 251.000.00-1.00--------------------------
.....................GGAGGTGGAGGTTGCAGTGAGCCAAGATGGC...................................................................................................................................................................................................... 311.000.00--1.00-------------------------
....................................................................................................ACAAACAAACAAACAGACTGG................................................................................................................................. 211.000.00--1.00-------------------------
..................................................TCGCCACTGTACTCCAGCCTTTAC................................................................................................................................................................................ 241.000.00-1.00--------------------------
...............................................................................................AACAAACAAACAAACAAACAGACCTG................................................................................................................................. 261.000.00-1.00--------------------------
..................CAGGGAGGTGGAGGTTGCAGTCTCG............................................................................................................................................................................................................... 251.000.00--1.00-------------------------
...............................................................................................AACAAACAAACAAACAAACAGACTG.................................................................................................................................. 251.000.00-1.00--------------------------
..................................................................................................AAACAAACAAACAAACAGAGCTGAG............................................................................................................................... 251.000.00-1.00--------------------------
................................................................................................ACAAACAAACAAACAAACAGGGTG.................................................................................................................................. 2401.000.00--1.00-------------------------
......................................................CACTGTACTCCAGCCTGGTTCAC............................................................................................................................................................................. 231.000.00--1.00-------------------------
.......................AGGTGGAGGTTGCAGTGAGCCAAAGGT........................................................................................................................................................................................................ 271.000.00-1.00--------------------------
................................................................................................ACAAACAAACAAACAAACAGACTGC................................................................................................................................. 251.000.00-1.00--------------------------
.................................................................................................CAAACAAACAAACAAACAGAGC................................................................................................................................... 221.000.00-1.00--------------------------
..............................................................................................CAACAAACAAACAAACAAACAGATTC.................................................................................................................................. 261.000.00--1.00-------------------------
...................................................................................................AACAAACAAACAAACAGAGCACTGG.............................................................................................................................. 251.000.00--1.00-------------------------
.......................................GAGCCAAGATCTCGCCACTGTACTC.......................................................................................................................................................................................... 251.000.00--1.00-------------------------
................ACCAGGGAGGTGGAGGTTGCAGTGAGCCACAAG......................................................................................................................................................................................................... 331.000.00--1.00-------------------------
.....................GGAGGTGGAGGTTGCAGTGAGCCAAGATGGTG..................................................................................................................................................................................................... 321.000.00--1.00-------------------------
..............................................................TCCAGCCTGGTGACAGATTGC....................................................................................................................................................................... 211.000.00-------------1.00--------------
..................................................................................................AAACAAACAAACAAACAGAGCATTCT.............................................................................................................................. 261.000.00-1.00--------------------------
.............................................................CTCCAGCCTGGTGACAGAGCAAGAAGA.................................................................................................................................................................. 271.000.00--1.00-------------------------
..................CAGGGAGGTGGAGGTTGTA..................................................................................................................................................................................................................... 191.000.00--------------1.00-------------
..........................................................GTACTCCAGCCTGGTGACAGTCTG........................................................................................................................................................................ 241.000.00------------------------1.00---
.............TGAACCAGGGAGGTGGAGGTTGCAGTGGCAA.............................................................................................................................................................................................................. 311.000.00----1.00-----------------------
..........................................................GTACTCCAGCCTGGTGACAGCG.......................................................................................................................................................................... 221.000.00--1.00-------------------------
.....................................................................TGGTGACAGAGCAAGACTCTTGTTGC........................................................................................................................................................... 261.000.00--1.00-------------------------
................................................................................................ACAAACAAACAAACAAACAGCCTT.................................................................................................................................. 2401.000.00-1.00--------------------------
.............................................................CTCCAGCCTGGTGACAGAGCAACACG................................................................................................................................................................... 261.000.00-1.00--------------------------
...............................................................................................AACAAACAAACAAACAAACAGACCTC................................................................................................................................. 261.000.00-1.00--------------------------
.................................................................................................CAAACAAACAAACAAACAGAGGGT................................................................................................................................. 241.000.00--1.00-------------------------
.........................................................................GACAGAGCAAGACTCTTCA.............................................................................................................................................................. 191.000.00----------1.00-----------------
...............................................................................................AACAAACAAACAAACAAACAGACTTC................................................................................................................................. 261.000.00--1.00-------------------------
........................GGTGGAGGTTGCAGTGAGCCAAGATGCGG..................................................................................................................................................................................................... 291.000.00-1.00--------------------------
.............................................................CTCCAGCCTGGTGACAGAAG......................................................................................................................................................................... 201.000.00-----1.00----------------------
..........................................................GTACTCCAGCCTGGTGGCG............................................................................................................................................................................. 191.000.00--1.00-------------------------
........................................................................................................ACAAACAAACAGAGCAGC................................................................................................................................ 181.000.00-1.00--------------------------
...............................................................................................CTGCTCTGTTTGTTTGTTTGTTTGTT................................................................................................................................. 2630.330.33-0.33--------------------------
............................................................................................TCTGTTTGTTTGTTTGTTTGTTGAG..................................................................................................................................... 2550.200.20-0.20--------------------------
.............................................................AGACAAGAGTCTTGCTCTGTCACCAGGCTGGAG............................................................................................................................................................ 3370.140.14-0.14--------------------------