ID: uc003pob.1_intron_4_0_chr6_91246121_r.3p
GENE: MAP3K7(11)
chr6:91246071-91246320-


(1)
AGO1.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(14)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(2)
HELA 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(9)
SKIN 		(1)
XRN.ip

Sense strand
ACCGCAGCTGTTTCTCTTCCTTTCTTTACATCTTTCTCTTCTTTTTTTTTTTTCTTAGCAATAAACTCACTTTTTTTTCCCCACAAACATTTTGTGTAGATCCAAGGAGCAACAAATTCCAACTTTCTGCTGTAGCAATTACACGCTTTTTGTCTGTTTGACTAGATTTTAGTATTTTACTTTTTTTCTTCTTTTTAAAGGCAACGGACAGCCAAGACGTAGATCCATCCAAGACTTGACTGTAACTGGA
.......................................................(((((.................((..(((((.....)))))..)).....((((.......)))).......)))))............(((....(((((......)))))...))).............................................................................
............................................45.........................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR343335SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR343336SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
..............................................................................................................................................................................TTTTACTTTTTTTCTTCTTTTTAAAAG.................................................2716.000.00-5.002.009.00---------------------------------------------
................................TTTCTCTTCTTTTTTTTTTTTCTTAG................................................................................................................................................................................................2616.006.00-2.003.00---1.00------------------------------------------
....................................TCTTCTTTTTTTTTTTTCTTAG................................................................................................................................................................................................2245.505.50-3.001.25--0.750.50------------------------------------------
..........................................................................................................................................................................................................AACGGACAGCCAAGACGTAGAT..........................2214.004.00-------3.00--1.00--------------------------------------
.................................................TTTTCTTAGCAATAAAATTG.....................................................................................................................................................................................203.000.00--------1.00------2.00---------------------------------
.................................TTCTCTTCTTTTTTTTTTTTCTTTTTG..............................................................................................................................................................................................273.000.00-1.00---1.001.00------------------------------------------
...................................CTCTTCTTTTTTTTTTAAAG...................................................................................................................................................................................................203.000.00-----1.002.00------------------------------------------
.................................TTCTCTTCTTTTTTTTTTTTCAAG.................................................................................................................................................................................................243.000.00-1.00---2.00-------------------------------------------
...................................................................................................................................................................................................................CCAAGACGTAGATCCATCCAAGA................2313.003.00-----------3.00-------------------------------------
..............................................................................................................................................................................................................GACAGCCAAGACGTAGATCCATC.....................2312.002.00-------2.00-----------------------------------------
..........................TACATCTTTCTCTTCTTTTTTTC.........................................................................................................................................................................................................232.000.002.00------------------------------------------------
..................................TCTCTTCTTTTTTTTTTTTCCGAG................................................................................................................................................................................................242.000.002.00------------------------------------------------
.......................................TCTTTTTTTTTTTTCTTAGCTTTC...........................................................................................................................................................................................242.000.001.00---1.00--------------------------------------------
................................TTTCTCTTCTTTTTTTTTTTTATG..................................................................................................................................................................................................242.000.00-2.00-----------------------------------------------
.........................................................................................................................................................................................................................CGTAGATCCATCCAAGACTTGA...........2212.002.00------------------1.001.00-----------------------------
..............................TCTTTCTCTTCTTTTTTTTTTTGGCT..................................................................................................................................................................................................262.000.00----2.00--------------------------------------------
..........................................................CAATAAACTCACTTTCATG.............................................................................................................................................................................192.000.00--------1.00-------------------------1.00--------------
...................................CTCTTCTTTTTTTTTTTTCTTTTAG..............................................................................................................................................................................................252.000.00-1.001.00----------------------------------------------
..................................TCTCTTCTTTTTTTTTTTTGCC..................................................................................................................................................................................................222.000.002.00------------------------------------------------
.........................................TTTTTTTTTTTTCTTAGCCGCC...........................................................................................................................................................................................222.000.001.00---1.00--------------------------------------------
...............................CTTTCTCTTCTTTTTTAAGC.......................................................................................................................................................................................................202.000.002.00------------------------------------------------
.................................................................................................................................................................................TACTTTTTTTCTTCTTTTTAAG...................................................222.000.00--1.001.00---------------------------------------------
................................TTTCTCTTCTTTTTTTTTTTGGC...................................................................................................................................................................................................232.000.002.00------------------------------------------------
.......................................TCTTTTTTTTTTTTCTTAGCAGTTT..........................................................................................................................................................................................252.000.001.00---1.00--------------------------------------------
...............................CTTTCTCTTCTTTTTTTTTTTTCTTAG................................................................................................................................................................................................2712.002.00-1.001.00----------------------------------------------
..............................................................................................................................................................................TTTTACTTTTTTTCTTCTTTTTG.....................................................232.000.00-1.001.00----------------------------------------------
..............................................................................................................................................................................TTTTACTTTTTTTCTTCTTTTGGG....................................................242.000.00----2.00--------------------------------------------
..................................TCTCTTCTTTTTTTTTAAG.....................................................................................................................................................................................................192.000.00--1.00---1.00------------------------------------------
.........................................................................................................................................................................................................CAACGGACAGCCAAGACG...............................1812.002.00-------------------------1.00--------------1.00--------
.....................................CTTCTTTTTTTTTTTTCTTAG................................................................................................................................................................................................2161.331.33-0.670.67----------------------------------------------
....................................TCTTCTTTTTTTTTTTTCTTGGGG..............................................................................................................................................................................................241.000.001.00------------------------------------------------
........................................CTTTTTTTTTTTTCTTAGCAG.............................................................................................................................................................................................211.000.001.00------------------------------------------------
..........................................................................................................................................................................................................AACGGACAGCCAAGAC................................1611.001.00------------1.00------------------------------------
.......................................TCTTTTTTTTTTTTCTTAGCAGTT...........................................................................................................................................................................................241.000.001.00------------------------------------------------
................................TTTCTCTTCTTTTTTTTTTTTGC...................................................................................................................................................................................................231.000.00----1.00--------------------------------------------
......................................TTCTTTTTTTTTTTTCTTAACG..............................................................................................................................................................................................221.000.00-----1.00-------------------------------------------
..................................TCTCTTCTTTTTTTTTTTAACA..................................................................................................................................................................................................221.000.00-----1.00-------------------------------------------
..................................................................................................................................................................................ACTTTTTTTCTTCTTTTTTTGG..................................................221.000.001.00------------------------------------------------
................................TTTCTCTTCTTTTTTTTTTTTCTCGG................................................................................................................................................................................................261.000.001.00------------------------------------------------
.....................................CTTCTTTTTTTTTTTTCGGG.................................................................................................................................................................................................201.000.001.00------------------------------------------------
..................................................................................................................................................................................................................GCCAAGACGTAGATCCA.......................1711.001.00-----------------------------------------1.00-------
........................................CTTTTTTTTTTTTCTTACCTG.............................................................................................................................................................................................211.000.00--1.00----------------------------------------------
................................TTTCTCTTCTTTTTTTTTTTGGCT..................................................................................................................................................................................................241.000.001.00------------------------------------------------
...............................................................AACTCACTTTTTTTTCACAG.......................................................................................................................................................................201.000.00-----------------1.00-------------------------------
................................TTTCTCTTCTTTTTTTTTTTTCTTTAT...............................................................................................................................................................................................271.000.00--1.00----------------------------------------------
......................................TTCTTTTTTTTTTTTCTTACGG..............................................................................................................................................................................................221.000.00----1.00--------------------------------------------
.................................................................................................................................................................................................................AGCCAAGACGTAGATCCATCCAAGACTTGAC..........3111.001.00---------------------------1.00---------------------
...........TTCTCTTCCTTTCTTTACATCTTTCTCTTCTTAG.............................................................................................................................................................................................................341.000.00--1.00----------------------------------------------
..................................TCTCTTCTTTTTTTTTTTTATCG.................................................................................................................................................................................................231.000.00--1.00----------------------------------------------
................................................................................................................................................................................................................CAGCCAAGACGTAGATCCATCC....................2211.001.00------------------------1.00------------------------
.....................................CTTCTTTTTTTTTTTTCGCG.................................................................................................................................................................................................201.000.00-1.00-----------------------------------------------
................................TTTCTCTTCTTTTTTTTAGT......................................................................................................................................................................................................201.000.00---1.00---------------------------------------------
..........................................................CAATAAACTCACTTTTTTTTCCCCACAAACATTTT.............................................................................................................................................................3511.001.00-----1.00-------------------------------------------
...........TTCTCTTCCTTTCTTTACATCTTTCTCTTCTTT..............................................................................................................................................................................................................3311.001.00-1.00-----------------------------------------------
.................................TTCTCTTCTTTTTTTTTTCCCT...................................................................................................................................................................................................221.000.00-----1.00-------------------------------------------
..............................TCTTTCTCTTCTTTTTTTTTCTGG....................................................................................................................................................................................................241.000.001.00------------------------------------------------
.................................TTCTCTTCTTTTTTTTTTTTCCCG.................................................................................................................................................................................................241.000.00--1.00----------------------------------------------
.........................................TTTTTTTTTTTTCTTAGCACGGC..........................................................................................................................................................................................231.000.001.00------------------------------------------------
...........................................................................................................................................................................................................ACGGACAGCCAAGACG...............................1611.001.00--------------------1.00----------------------------
...............................CTTTCTCTTCTTTTTTTTTTTTCTGGC................................................................................................................................................................................................271.000.001.00------------------------------------------------
...............................CTTTCTCTTCTTTTTTTTTTTTCTTTTG...............................................................................................................................................................................................281.000.00--1.00----------------------------------------------
.....................................CTTCTTTTTTTTTTTTCTTAAATG.............................................................................................................................................................................................241.000.00-1.00-----------------------------------------------
....................................TCTTCTTTTTTTTTTTTCTGCAG...............................................................................................................................................................................................231.000.001.00------------------------------------------------
..............................TCTTTCTCTTCTTTTTTTTTTTAATT..................................................................................................................................................................................................261.000.00-1.00-----------------------------------------------
................................TTTCTCTTCTTTTTTTTTTTCAG...................................................................................................................................................................................................231.000.00-1.00-----------------------------------------------
..................................TCTCTTCTTTTTTTTTTTTCGCC.................................................................................................................................................................................................231.000.001.00------------------------------------------------
................................TTTCTCTTCTTTTTTTTTTTTCTG..................................................................................................................................................................................................241.000.00-----1.00-------------------------------------------
...GCAGCTGTTTCTCTTCTTCT...................................................................................................................................................................................................................................201.000.00-------------------------------------1.00-----------
..................................................................................................................................................................................ACTTTTTTTCTTCTTTTTTAG...................................................211.000.00-1.00-----------------------------------------------
.................................TTCTCTTCTTTTTTTTTTGGCT...................................................................................................................................................................................................221.000.00----1.00--------------------------------------------
........................................................................................................................................................................................................GCAACGGACAGCCAAGACG...............................1911.001.00----------------1.00--------------------------------
..................................................................................................................................................................................ACTTTTTTTCTTCTTTTTTTTG..................................................221.000.00-----1.00-------------------------------------------
..................................TCTCTTCTTTTTTTTTTTTCTTTG................................................................................................................................................................................................241.000.00--1.00----------------------------------------------
.................................TTCTCTTCTTTTTTTTTTTTCACTT................................................................................................................................................................................................251.000.001.00------------------------------------------------
...................................CTCTTCTTTTTTTTTTTTCTTCTT...............................................................................................................................................................................................241.000.00-1.00-----------------------------------------------
.....................................CTTCTTTTTTTTTTTTCTTACATG.............................................................................................................................................................................................241.000.00-1.00-----------------------------------------------
.................................TTCTCTTCTTTTTTTTTTTAATG..................................................................................................................................................................................................231.000.00--1.00----------------------------------------------
...............................CTTTCTCTTCTTTTTTTTTTTTCTTCCAG..............................................................................................................................................................................................291.000.00--1.00----------------------------------------------
..................................TCTCTTCTTTTTTTTTTTTCTAG.................................................................................................................................................................................................231.000.00--1.00----------------------------------------------
.................................................................................................................................................................................TACTTTTTTTCTTCTTTTTACAG..................................................231.000.00--1.00----------------------------------------------
..........................................................CAATAAACTCACTTTTTTTTCCCCACAAACATC...............................................................................................................................................................331.000.00-1.00-----------------------------------------------
.....................................................................................................................................................................................................................AAGACGTAGATCCATCCAAGAC...............2211.001.00---------1.00---------------------------------------
.................................TTCTCTTCTTTTTTTTTTTTCTTATTG..............................................................................................................................................................................................271.000.00-1.00-----------------------------------------------
...................CTTTCTTTACATCTTTCTCTTCTTTTTTTTTTT......................................................................................................................................................................................................3311.001.00-1.00-----------------------------------------------
..................................TCTCTTCTTTTTTTTTTTTCTTAG................................................................................................................................................................................................2411.001.00-1.00-----------------------------------------------
................................TTTCTCTTCTTTTTTTTTTTTGCT..................................................................................................................................................................................................241.000.001.00------------------------------------------------
.................................TTCTCTTCTTTTTTTTTAAAG....................................................................................................................................................................................................211.000.00------1.00------------------------------------------
.....................................................................................................................................................................................................................AAGACGTAGATCCATCCAAGACA..............2311.001.00--------------------------------------------1.00----
..................................TCTCTTCTTTTTTTTTTTGGC...................................................................................................................................................................................................211.000.001.00------------------------------------------------
.............................................................................................GTGTAGATCCAAGGAGCAACAT.......................................................................................................................................221.000.00----------1.00--------------------------------------
...................................CTCTTCTTTTTTTTTTTTCTCCAG...............................................................................................................................................................................................241.000.00-1.00-----------------------------------------------
.....................................CTTCTTTTTTTTTTTTCTCTG................................................................................................................................................................................................211.000.00-1.00-----------------------------------------------
...............................................................................................................................................................................TTTACTTTTTTTCTTCTTAAG......................................................211.000.00-1.00-----------------------------------------------
..............................TCTTTCTCTTCTTTTTTTTTTCAG....................................................................................................................................................................................................241.000.001.00------------------------------------------------
.................................................................................................................................................................................TACTTTTTTTCTTCTTTTTTTTG..................................................231.000.00-1.00-----------------------------------------------
...............................CTTTCTCTTCTTTTTTTTTTCAG....................................................................................................................................................................................................231.000.00-1.00-----------------------------------------------
........................................................................................................................................................................................................GCAACGGACAGCCAAGACGTAGATA.........................251.000.00------------------------------------------1.00------
.................................TTCTCTTCTTTTTTTTTTTTGG...................................................................................................................................................................................................221.000.001.00------------------------------------------------
..............................TCTTTCTCTTCTTTTTTTTTTTCAG...................................................................................................................................................................................................251.000.001.00------------------------------------------------
...................................................................................................................................................................................CTTTTTTTCTTCTTTTTAAAG..................................................2111.001.00-1.00-----------------------------------------------
..................................TCTCTTCTTTTTTTTTTTTCTTTTTC..............................................................................................................................................................................................261.000.001.00------------------------------------------------
..............................................................................................................................................................................................................GACAGCCAAGACGTAGATCCAT......................2211.001.00-------------------------------1.00-----------------
..................................TCTCTTCTTTTTTTTTTAAG....................................................................................................................................................................................................201.000.00------1.00------------------------------------------
...........................ACATCTTTCTCTTCTTTTTTTTTTTTCTC..................................................................................................................................................................................................291.000.001.00------------------------------------------------
..........................................................CAATAAACTCACTTTTTTTTCCCCACAAAC..................................................................................................................................................................3011.001.00------------------------------------1.00------------
.................................TTCTCTTCTTTTTTTTTTTAT....................................................................................................................................................................................................211.000.00------1.00------------------------------------------
.................................TTCTCTTCTTTTTTTTTTTTGGC..................................................................................................................................................................................................231.000.00----1.00--------------------------------------------
........................................................................................................................................................................................................GCAACGGACAGCCAAGACGTAG............................2211.001.00-----------------------------1.00-------------------
.......................................TCTTTTTTTTTTTTCTTACCTG.............................................................................................................................................................................................221.000.00-1.00-----------------------------------------------
.................................TTCTCTTCTTTTTTTTTTTTCTGGC................................................................................................................................................................................................251.000.001.00------------------------------------------------
...........................ACATCTTTCTCTTCTTTTTTTTTCCT.....................................................................................................................................................................................................261.000.001.00------------------------------------------------
................................TTTCTCTTCTTTTTTTTTAAG.....................................................................................................................................................................................................211.000.00--1.00----------------------------------------------
.......................................TCTTTTTTTTTTTTCTTACGTG.............................................................................................................................................................................................221.000.00------1.00------------------------------------------
...................................CTCTTCTTTTTTTTTTTAAAG..................................................................................................................................................................................................211.000.00-----1.00-------------------------------------------
.................................TTCTCTTCTTTTTTTTTTGG.....................................................................................................................................................................................................201.000.001.00------------------------------------------------
................................TTTCTCTTCTTTTTTTTTTAACT...................................................................................................................................................................................................231.000.00---1.00---------------------------------------------
.........................................TTTTTTTTTTTTCTTAGCGTGG...........................................................................................................................................................................................221.000.00----1.00--------------------------------------------
................................TTTCTCTTCTTTTTTTTTTTCCCA..................................................................................................................................................................................................241.000.00--1.00----------------------------------------------
................................TTTCTCTTCTTTTTTTTTTTTCTTTAAG..............................................................................................................................................................................................281.000.00---1.00---------------------------------------------
......................................................................................................................................................................................................................AGACGTAGATCCATCCAAGACT..............2211.001.00-------------1.00-----------------------------------
.....................................CTTCTTTTTTTTTTTTCTAAAG...............................................................................................................................................................................................221.000.00--1.00----------------------------------------------
.................................TTCTCTTCTTTTTTTTTTCG.....................................................................................................................................................................................................201.000.00-1.00-----------------------------------------------
.................................TTCTCTTCTTTTTTTTTTTTAAAC.................................................................................................................................................................................................241.000.001.00------------------------------------------------
.................................TTCTCTTCTTTTTTTTTTTTCTTGGTG..............................................................................................................................................................................................271.000.001.00------------------------------------------------
......................................TTCTTTTTTTTTTTTCTTAAACC.............................................................................................................................................................................................231.000.00---1.00---------------------------------------------
..............................TCTTTCTCTTCTTTTTTTTTCTTT....................................................................................................................................................................................................241.000.001.00------------------------------------------------
..........................................................CAATAAACTCACTTTTTTTTCCCCACAAACATTTG.............................................................................................................................................................351.000.00-1.00-----------------------------------------------
..........................................................................................................................................................................................................AACGGACAGCCAAGACGTAGATCC........................2411.001.00---------1.00---------------------------------------
.................................................................................................................................................CTTTTTGTCTGTTTGTTGT......................................................................................191.000.001.00------------------------------------------------
...............................CTTTCTCTTCTTTTTTTTTTTAG....................................................................................................................................................................................................231.000.00-----1.00-------------------------------------------
.....................................................................................AACATTTTGTGTAGATCCAAGGAGCAAC.........................................................................................................................................2811.001.00---------1.00---------------------------------------
......................................TTCTTTTTTTTTTTTCTTACTTC.............................................................................................................................................................................................231.000.00-1.00-----------------------------------------------
..............................................................................................................................................................................................................................ATCCATCCAAGACTTGACTGTA......2211.001.00-------1.00-----------------------------------------
............................................................................................................................................................................TATTTTACTTTTTTTCTTCTTTAAAA....................................................261.000.00------1.00------------------------------------------
..............................TCTTTCTCTTCTTTTTTTTTTGGTC...................................................................................................................................................................................................251.000.00----1.00--------------------------------------------
.................................TTCTCTTCTTTTTTTTTTTTAC...................................................................................................................................................................................................221.000.00-1.00-----------------------------------------------
.......................................TCTTTTTTTTTTTTCTTACAGG.............................................................................................................................................................................................221.000.001.00------------------------------------------------
.........................................TTTTTTTTTTTTCTTAGCGGCT...........................................................................................................................................................................................221.000.001.00------------------------------------------------
................................................................ACTCACTTTTTTTTCTTCG.......................................................................................................................................................................191.000.00--1.00----------------------------------------------
.................................TTCTCTTCTTTTTTTTTTTTAATG.................................................................................................................................................................................................241.000.00--1.00----------------------------------------------
................................TTTCTCTTCTTTTTTTTTTTGCG...................................................................................................................................................................................................231.000.001.00------------------------------------------------
..................................................................................................................................................................................................................................ATCCAAGACTTGACTGTAA.....1911.001.00-----------------------------------------------1.00-
..................................................................................................................................................................................ACTTTTTTTCTTCTTTTTAG....................................................201.000.00--1.00----------------------------------------------
................................TTTCTCTTCTTTTTTTTTTTTAAAG.................................................................................................................................................................................................251.000.00-----1.00-------------------------------------------
........................TTTACATCTTTCTCTCACT...............................................................................................................................................................................................................191.000.00--1.00----------------------------------------------
.....................................CTTCTTTTTTTTTTTTCTTAATG..............................................................................................................................................................................................231.000.00-1.00-----------------------------------------------
....................................................................................................................................................................................................................CAAGACGTAGATCCATCCAAGAC...............2311.001.00-----------------------1.00-------------------------
..............................................................................................................................................................................TTTTACTTTTTTTCTTCCCTC.......................................................211.000.00----1.00--------------------------------------------
.........................................................................................................................................................................................................CAACGGACAGCCAAGAC................................1711.001.00--------------------------------1.00----------------
..................................TCTCTTCTTTTTTTTTTTTCAT..................................................................................................................................................................................................221.000.00-1.00-----------------------------------------------
..........................................................................................................................................................................................................AACGGACAGCCAAGACGTAG............................2011.001.00------------------1.00------------------------------
.................................TTCTCTTCTTTTTTTTTTTTCTGAG................................................................................................................................................................................................251.000.00----1.00--------------------------------------------
...............................CTTTCTCTTCTTTTTTTTTTTACAG..................................................................................................................................................................................................251.000.00--1.00----------------------------------------------
................................................................................................................................................................................................................CAGCCAAGACGTAGATCC........................1811.001.00---------------------------------1.00---------------
.................................TTCTCTTCTTTTTTTTTTTTCTGA.................................................................................................................................................................................................241.000.00----1.00--------------------------------------------
.......................................................................................................................................................................................................................................AGACTTGACTGTAACGGAC191.000.00-------------1.00-----------------------------------
.........................................................................................................................................................................................................................CGTAGATCCATCCAAGACTTGAAA.........2411.002.00----------------------1.00--------------------------
....................................TCTTCTTTTTTTTTTTTCTGC.................................................................................................................................................................................................211.000.001.00------------------------------------------------
................................TTTCTCTTCTTTTTTTTTTTTCTTTTTG..............................................................................................................................................................................................281.000.00--1.00----------------------------------------------
..................................................................................................................................................................................................................................ATCCAAGACTTGACTGTAAC....2011.001.00------------1.00------------------------------------
.......................................TCTTTTTTTTTTTTCTTAGCAGG............................................................................................................................................................................................231.000.001.00------------------------------------------------
.........................TTACATCTTTCTCTTCTTTTTTTTTTTTCCTAG................................................................................................................................................................................................331.000.00-1.00-----------------------------------------------
........................................CTTTTTTTTTTTTCTTACTCG.............................................................................................................................................................................................211.000.00-----1.00-------------------------------------------
................................TTTCTCTTCTTTTTTTTTTTTCTAG.................................................................................................................................................................................................251.000.00-1.00-----------------------------------------------
..............................TCTTTCTCTTCTTTTTTTTTTTTGGC..................................................................................................................................................................................................261.000.00----1.00--------------------------------------------
................................................TTTTTCTTAGCAATAAAATT......................................................................................................................................................................................201.000.00--------1.00----------------------------------------
............................................................................................................................................................................................................CGGACAGCCAAGACGTAG............................1811.001.00----------------1.00--------------------------------
..................................TCTCTTCTTTTTTTTTAAGT....................................................................................................................................................................................................201.000.00---1.00---------------------------------------------
..........................................................................................TTTGTGTAGATCCAAGGA..............................................................................................................................................1811.001.00--------------1.00----------------------------------
...............................CTTTCTCTTCTTTTTTTTTTTTAACG.................................................................................................................................................................................................261.000.00-----1.00-------------------------------------------
..........................................................................................................................................................................................................................GTAGATCCATCCAAGACTTGT...........211.000.00--------------------------------------1.00----------
...........................................TTTTTTTTTTCTTAGCGTTT...........................................................................................................................................................................................201.000.001.00------------------------------------------------
.................................................................................................................................................................................TACTTTTTTTCTTCTTTATG.....................................................201.000.00--1.00----------------------------------------------
..................................TCTCTTCTTTTTTTTTTCTAG...................................................................................................................................................................................................211.000.00--1.00----------------------------------------------
.............................................................................................GTGTAGATCCAAGGACACT..........................................................................................................................................191.000.00----------------------------------------------1.00--
..................................................................................................................................................................................ACTTTTTTTCTTCTTTACAG....................................................201.000.001.00------------------------------------------------
......................................TTCTTTTTTTTTTTTCTTAAGG..............................................................................................................................................................................................221.000.00-----1.00-------------------------------------------
....................................TCTTCTTTTTTTTTTTTCGGTG................................................................................................................................................................................................221.000.001.00------------------------------------------------
...............................CTTTCTCTTCTTTTTTTTTTTTGGC..................................................................................................................................................................................................251.000.001.00------------------------------------------------
..................................TCTCTTCTTTTTTTTTTTTCCTAG................................................................................................................................................................................................241.000.00-1.00-----------------------------------------------
.............CTCTTCCTTTCTTTACTTTA.........................................................................................................................................................................................................................201.000.00-1.00-----------------------------------------------
...............................CTTTCTCTTCTTTTTTTTTTTCCA...................................................................................................................................................................................................241.000.00-1.00-----------------------------------------------
..................................................................................................................................................................................ACTTTTTTTCTTCTTTTTTTAG..................................................221.000.00-1.00-----------------------------------------------
................................TTTCTCTTCTTTTTTTTTTTTCTAA.................................................................................................................................................................................................251.000.00--1.00----------------------------------------------
.........................................TTTTTTTTTTTTCTTAGCCAGC...........................................................................................................................................................................................221.000.001.00------------------------------------------------
.................................TTCTCTTCTTTTTTTTTTCAAG...................................................................................................................................................................................................221.000.00------1.00------------------------------------------
.................................................................................................................................................................................TACTTTTTTTCTTCTTTTAAC....................................................211.000.00---1.00---------------------------------------------
...............................CTTTCTCTTCTTTTTTTTTTTTCTCAG................................................................................................................................................................................................271.000.00--1.00----------------------------------------------
.....................................CTTCTTTTTTTTTTTTCTCTGG...............................................................................................................................................................................................221.000.001.00------------------------------------------------
..................................TCTCTTCTTTTTTTTTTTTAGG..................................................................................................................................................................................................221.000.001.00------------------------------------------------
.................................TTCTCTTCTTTTTTTTTTATTT...................................................................................................................................................................................................221.000.00------1.00------------------------------------------
...............................CTTTCTCTTCTTTTTTTTCCTG.....................................................................................................................................................................................................221.000.00------1.00------------------------------------------
.................................TTCTCTTCTTTTTTTTTTAATA...................................................................................................................................................................................................221.000.00-----1.00-------------------------------------------
....................................................................................................................................................................................................................CAAGACGTAGATCCATC.....................1711.001.00-------------------------------------------1.00-----
.................................TTCTCTTCTTTTTTTTTTTTCTTAG................................................................................................................................................................................................2511.001.00-1.00-----------------------------------------------
.....................................CTTCTTTTTTTTTTTTCTCTTC...............................................................................................................................................................................................221.000.001.00------------------------------------------------
..................................TCTCTTCTTTTTTTTTTTTCTG..................................................................................................................................................................................................221.000.00-1.00-----------------------------------------------
..............................TCTTTCTCTTCTTTTTTTTTGGC.....................................................................................................................................................................................................231.000.001.00------------------------------------------------
..................................TCTCTTCTTTTTTTTTTTGGCT..................................................................................................................................................................................................221.000.001.00------------------------------------------------
.......................................................................................................................CAACTTTCTGCTGTAGCAATTACACG.........................................................................................................2611.001.00--------------1.00----------------------------------
...............................CTTTCTCTTCTTTTTTTTTCCAG....................................................................................................................................................................................................231.000.00-1.00-----------------------------------------------
......................TCTTTACATCTTTCTCTTCTTTTTTTTTTTT.....................................................................................................................................................................................................3111.001.00-1.00-----------------------------------------------
..........................................................CAATAAACTCACTTTTTTTTCCCCACAAACATT...............................................................................................................................................................3311.001.00-1.00-----------------------------------------------
.....................................CTTCTTTTTTTTTTTTCTTAATT..............................................................................................................................................................................................231.000.00---1.00---------------------------------------------
................................TTTCTCTTCTTTTTTTTTTTTCTTC.................................................................................................................................................................................................251.000.001.00------------------------------------------------
...................................CTCTTCTTTTTTTTTTTTCTAACT...............................................................................................................................................................................................241.000.00---1.00---------------------------------------------
...............................CTTTCTCTTCTTTTTTTTTTTTCTAG.................................................................................................................................................................................................261.000.00-----1.00-------------------------------------------
.................................TTCTCTTCTTTTTTTTTTTGG....................................................................................................................................................................................................211.000.001.00------------------------------------------------
.....................................CTTCTTTTTTTTTTTTCTTAATAG.............................................................................................................................................................................................241.000.00-1.00-----------------------------------------------
..........TTTCTCTTCCTTTCTTTACATCTTTCTCTTAA................................................................................................................................................................................................................321.000.00--1.00----------------------------------------------
...............................................................................................................................................................................TTTACTTTTTTTCTTCTTTTTTGGG..................................................251.000.00---1.00---------------------------------------------
.................................TTCTCTTCTTTTTTTTTTTTCTTTG................................................................................................................................................................................................251.000.00---1.00---------------------------------------------
..................................TCTCTTCTTTTTTTTTTTTCTTTCAG..............................................................................................................................................................................................261.000.001.00------------------------------------------------
.........................................................................................................................................................................................................CAACGGACAGCCAAGACGG..............................1911.002.00---------------------1.00---------------------------
.................................TTCTCTTCTTTTTTTTTTGGC....................................................................................................................................................................................................211.000.00----1.00--------------------------------------------
..................................................................................................................................................................................ACTTTTTTTCTTCTTTTTAAG...................................................211.000.001.00------------------------------------------------
.............................................................................................................................................................................................................GGACAGCCAAGACGTAGATCCATC.....................2411.001.00----------1.00--------------------------------------
................................................................................................................................................................................................................CAGCCAAGACGTAGATCCATCCAAG.................2511.001.00-----------------------------------1.00-------------
......................................TTCTTTTTTTTTTTTCTTAGATC.............................................................................................................................................................................................231.000.00----1.00--------------------------------------------
.................................TTCTCTTCTTTTTTTTTTTGGC...................................................................................................................................................................................................221.000.001.00------------------------------------------------
...............................CTTTCTCTTCTTTTTTTTTAGT.....................................................................................................................................................................................................221.000.001.00------------------------------------------------
.................................TTCTCTTCTTTTTTTTTTTATTG..................................................................................................................................................................................................231.000.00-----1.00-------------------------------------------
........................................CTTTTTTTTTTTTCTTACTTT.............................................................................................................................................................................................211.000.001.00------------------------------------------------
..................................TCTCTTCTTTTTTTTTTTTCTGGCC...............................................................................................................................................................................................251.000.001.00------------------------------------------------
..........................................................CAATAAACTCACTTTCAT..............................................................................................................................................................................181.000.00-----------------1.00-------------------------------
.....................................CTTCTTTTTTTTTTTTCTTAACG..............................................................................................................................................................................................231.000.00-1.00-----------------------------------------------
..................................TCTCTTCTTTTTTTTTTTTCTTGTC...............................................................................................................................................................................................251.000.00----1.00--------------------------------------------
..............................................................................................................................................................................TTTTACTTTTTTTCTTCTTCTT......................................................2250.600.200.20--0.40---------------------------------------------
....................................TCTTCTTTTTTTTTTTTCTTAGGG..............................................................................................................................................................................................2440.505.500.50------------------------------------------------
..............................................................................................................................................................................................................GACAGCCAAGACGTAGA...........................1720.500.50-------------------0.50-----------------------------
....................................................................................................................................................................................................................................CCAAGACTTGACTGT.......1550.200.20------------------------------------------------0.20
..............................................................................................................................................................................TTTTACTTTTTTTCTTCTTAAAA.....................................................2350.200.20-0.20-----------------------------------------------
..............................................................................................................................................................................TTTTACTTTTTTTCTTCTT.........................................................1950.200.20---0.20---------------------------------------------
....................................TCTTCTTTTTTTTTTTTCTTACAAG.............................................................................................................................................................................................2570.140.14------0.14------------------------------------------
....................................TCTTCTTTTTTTTTTTTCTTAAG...............................................................................................................................................................................................2370.140.14------0.14------------------------------------------
....................................TCTTCTTTTTTTTTTTTCTTACC...............................................................................................................................................................................................2370.140.14----0.14--------------------------------------------
....................................TCTTCTTTTTTTTTTTTCTTA.................................................................................................................................................................................................2170.140.14-----0.14-------------------------------------------
....................................TCTTCTTTTTTTTTTTTCTTACTT..............................................................................................................................................................................................2470.140.14---0.14---------------------------------------------
.........................................................................................................................ACTTTCTGCTGTAGC..................................................................................................................1590.110.11------------------------------------------------0.11
...............................................................................................................................................................................TTTACTTTTTTTCTTCTTT........................................................1990.110.11---0.11---------------------------------------------

Antisense strand
ACCGCAGCTGTTTCTCTTCCTTTCTTTACATCTTTCTCTTCTTTTTTTTTTTTCTTAGCAATAAACTCACTTTTTTTTCCCCACAAACATTTTGTGTAGATCCAAGGAGCAACAAATTCCAACTTTCTGCTGTAGCAATTACACGCTTTTTGTCTGTTTGACTAGATTTTAGTATTTTACTTTTTTTCTTCTTTTTAAAGGCAACGGACAGCCAAGACGTAGATCCATCCAAGACTTGACTGTAACTGGA
.......................................................(((((.................((..(((((.....)))))..)).....((((.......)))).......)))))............(((....(((((......)))))...))).............................................................................
............................................45.........................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR343335SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR343336SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
.........................................TTTTTTTTTTTTCTTATAGT............................................................................................................................................................................................. 201.000.00------------------------------1.00------------------
................................TTTCTCTTCTTTTTTTTTTCT..................................................................................................................................................................................................... 211.000.00---------------------------------------------1.00---
...........................................................................................................AGCAACAAATTCCAACTG............................................................................................................................. 181.000.00---------------------------------------1.00---------
................................TTTCTCTTCTTTTTTTTTTTTCAAGG................................................................................................................................................................................................ 261.000.00--------------------------1.00----------------------
.......CTGTTTCTCTTCCTTTTGAT............................................................................................................................................................................................................................... 201.000.00----------------------------1.00--------------------