ID: uc003pmz.2_intron_0_0_chr6_89856329_f.3p
GENE: (1)
chr6:89858784-89859033+


(1)
AGO2.ip
(3)
B-CELL
(1)
BRAIN
(1)
BREAST
(6)
CELL-LINE
(2)
CERVIX
(2)
HEART
(1)
HELA
(1)
LIVER
(1)
OTHER
(1)
RRP40.ip
(12)
SKIN
(1)
XRN.ip

Sense strand
AAGTTGGTATAACAATGTACATTTTGTGATTAATTTAGCACCATTTGTTGATGCCCATTGCGTAAGCGTCATAGAACAAAACCTGTCTTAATAGGTTAAGGACTTTAATGTAGATTGTGAATACATATGCAGGTGAACCTGTTTGATATATTCCTATGAGGATTTTGTTGTTTTTCCCTGACATGAGTATTTCCTTCTAGGTAGTTGTCCTGGGAACCCCTGCAGAAGAAGATGGTGGTGGCAAAATTGA
...............................................................................(((((((....))))))).(((......(((((.........)))))..(((((....)))))..((((...(((.....)))...)))).......))).......................................................................
..............................................................................79.......................................................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR029126(GSM416755)
143B. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR343335SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR038862(GSM458545)
MM472. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.................................................................................................................................................................ATTTTGTTGTTTTTCGGAA......................................................................1957.000.0015.0014.007.006.005.004.002.00------------1.00---1.00--1.00---1.00-
......................................................................................................................................................................................................AGGTAGTTGTCCTGGGAA..................................1812.002.00--------2.00-----------------------
............................................................................................................................................................................................................TTGTCCTGGGAACCCCTGCAGA........................2212.002.00---------------1.00---------1.00------
...................................TAGCACCATTTGTTGTGAG....................................................................................................................................................................................................191.000.00-------1.00------------------------
...................................................................................................................................................................................................................GGGAACCCCTGCAGAAGAAGATG................2311.001.00-------------1.00------------------
................................................................................................................................................................................................................CCTGGGAACCCCTGCAGAAGAAGATGGTGGGC..........321.000.00------------1.00-------------------
.............................................................................................................................................................................TTCCCTGACATGAGTATTTCCTT......................................................2311.001.00--------------------1.00-----------
............................................................................................................................................................................................................TTGTCCTGGGAACCCCTTATT.........................211.000.00--------------1.00-----------------
...................................................................................TGTCTTAATAGGTTAAGGACT..................................................................................................................................................2111.001.00---------------------1.00----------
............................................................................................AGGTTAAGGACTTTAGG.............................................................................................................................................171.000.00----------------------------1.00---
..................................................................................................................................................................................................................TGGGAACCCCTGCAGAAGAAGATGGTGGTGGC........3211.001.00----------------1.00---------------
........................................................................................................................................................................................................GTAGTTGTCCTGGGAACCCCTGCAGAAGAAGATGGT..............3611.001.00---------1.00----------------------
...............................................................................................................................................................................................................................AGAAGAAGATGGTGGTGGCAA......2111.001.00---------------------------1.00----
..............................................................................................................................................................................................................................CAGAAGAAGATGGTGGTGG.........1911.001.00------------------1.00-------------
...............................................................................................................................................................................................................................AGAAGAAGATGGTGGTGGCAAAAT...2411.001.00-----------1.00--------------------
......................................................................................................................................................................................................AGGTAGTTGTCCTGGGAACCCCTGCAGAAGAAGA..................3411.001.00-----------------1.00--------------
.........................................................................................................................................................CTATGAGGATTTTGTAACC..............................................................................191.000.00----------1.00---------------------
...................................TAGCACCATTTGTTGTCTA....................................................................................................................................................................................................191.000.00-------1.00------------------------
............................................................................................................................................................................................................................TGCAGAAGAAGATGGTGGTGG.........2111.001.00----------------------1.00---------
...........................................................................................................................................................................................................GTTGTCCTGGGAACC................................1580.120.12-------------------------------0.12

Antisense strand
AAGTTGGTATAACAATGTACATTTTGTGATTAATTTAGCACCATTTGTTGATGCCCATTGCGTAAGCGTCATAGAACAAAACCTGTCTTAATAGGTTAAGGACTTTAATGTAGATTGTGAATACATATGCAGGTGAACCTGTTTGATATATTCCTATGAGGATTTTGTTGTTTTTCCCTGACATGAGTATTTCCTTCTAGGTAGTTGTCCTGGGAACCCCTGCAGAAGAAGATGGTGGTGGCAAAATTGA
...............................................................................(((((((....))))))).(((......(((((.........)))))..(((((....)))))..((((...(((.....)))...)))).......))).......................................................................
..............................................................................79.......................................................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR029126(GSM416755)
143B. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR343335SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR038862(GSM458545)
MM472. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
....................................................................................................................................GTGAACCTGTTTGATGGAG................................................................................................... 191.000.00-----------------------------1.00--
............................................................................................................................................................................................................................TGCAGAAGAAGATGGTGCC........... 191.000.00------------------------1.00-------