ID: uc003pmk.2_intron_2_0_chr6_88387686_r.3p
GENE: (2)
chr6:88387636-88387885-


(3)
B-CELL 		(2)
BRAIN 		(2)
BREAST 		(9)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(3)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
GCCGTGTTTTTCCAGCGTCACCAGCTGATGGAATTATTATTTTGGTTGTTTTAAGACTTGTGAAATGCTGTGCTTAAAATCTGATTTTAAAATGCTTTTATATCAAGATTGAAGAGATCCAAATAAAACCTCTTCATTTAGAAACTGCTTTATATCATGGCTCTAAACCAGGTGCTATTTTTTGTCCTCATTGTACATAGGGACTTCATCTGCAGCATCCTCACCATTAAAAAAAGAACAGCCCTTATTT
......................................................................................................((.(((.(((((((.............)))))))))).))..............(((((.((......)).)))))........................................................................
..................................................................................................99..................................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR343335SRR343334SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR037943(GSM510481)
293DcrTN. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR343337SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040038(GSM532923)
G531N. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
.................................................................................................................................................................TCTAAACCAGGTGCTAAG.......................................................................1831.000.0016.007.00-6.00----2.00--------------------------
......................................................................................................................................................TATATCATGGCTCTAACC..................................................................................187.000.00----7.00------------------------------
..................................................................................................................................................................CTAAACCAGGTGCTAAG.......................................................................175.000.002.001.00-2.00-------------------------------
................................................................................................................................................................CTCTAAACCAGGTGCTAAG.......................................................................194.000.002.001.00-1.00-------------------------------
......................................................................................................................................................................................................AGGGACTTCATCTGCAGCATCC..............................2214.004.00--4.00--------------------------------
......................................................................................................................................................................................................AGGGACTTCATCTGCAGCAT................................2013.003.00--2.00------------------1.00-------------
......................................................................................................................................................................................................AGGGACTTCATCTGCAGCATCCTCA...........................2513.003.00--1.00--1.00--------------------1.00--------
.......................................................................................................CAAGATTGAAGAGATGGTT................................................................................................................................193.000.00------3.00----------------------------
.................................................................................................................................................................TCTAAACCAGGTGCTAA........................................................................172.000.00-1.00---------------1.00-----------------
......................................................................................................................................................................................................AGGGACTTCATCTGCAGCATC...............................2112.002.00--1.00------------------------1.00-------
......................................................................................................................................................................................................AGGGACTTCATCTGCAGC..................................1812.002.00-------2.00---------------------------
......................................................................................................................................................................................................AGGGACTTCATCTGCAGCATA...............................2112.003.00-----2.00-----------------------------
..................................................................................................................................................................CTAAACCAGGTGCTATTTTTTGT.................................................................2311.001.00----------------------1.00------------
................................................................................................TTTATATCAAGATTGTCTA.......................................................................................................................................191.000.00-------------------1.00---------------
.......................................................................................................................................................................................................GGGACTTCATCTGCAGCATCCTCACC.........................2611.001.00-----------1.00-----------------------
......................................................................................................................................................................................................AGGGACTTCATCTGCAGCATCGT.............................2311.002.00--1.00--------------------------------
......................................................................................................................................................................................................AGGGACTTCATCTGCAGCA.................................1911.001.00------------------------1.00----------
............................TGGAATTATTATTTTGGTTGTTT.......................................................................................................................................................................................................2311.001.00---------------1.00-------------------
..............................................................................................................................................................................CTATTTTTTGTCCTCATTGTACATAG..................................................2611.001.00--------------1.00--------------------
...........................................................GTGAAATGCTGTGCTTAGGT...........................................................................................................................................................................201.000.00-------------------------1.00---------
........................................................................................................................................................................................................................ATCCTCACCATTAAAAAAAGA.............2121.001.00-1.00---------------------------------
........................................................................................................................................................................................................GGACTTCATCTGCAGCATC...............................1911.001.00------------1.00----------------------
......................................................................................................................................................................................................AGGGACTTCATCTGCAGCATCCTCAC..........................2611.001.00----------1.00------------------------
......................................................................................................................................................................................................AGGGACTTCATCTGCAGCATCCT.............................2311.001.00--1.00--------------------------------
............................................................................................................................................................................................................TTCATCTGCAGCATCCTCACCA........................2220.500.50-----0.50-----------------------------
..........................................................................................................................................................................................................ACTTCATCTGCAGCATCCTCACCATT......................2620.500.50----------------0.50------------------
..................................................................................................................................................................................................................................TTAAAAAAAGAACAGCCC......1820.500.50--------------------------------0.50--
......................................................................................................................................................................................................................................AAAAAGAACAGCCCTTAT..1820.500.50--0.50--------------------------------
................................................................................................................................................................CTCTAAACCAGGTGCTATT.......................................................................1920.500.50-------------------------------0.50---
...............................................................................................................................................................................................................ATCTGCAGCATCCTCACCATTAAAAAAAG..............2920.500.50----------------0.50------------------
................................................................................................................................................CTGCTTTATATCATGGC.........................................................................................1760.170.17---------------------------------0.17-
...............................................................................................................................................................................................................ATCTGCAGCATCCTC............................1580.120.12----------------------------------0.12

Antisense strand
GCCGTGTTTTTCCAGCGTCACCAGCTGATGGAATTATTATTTTGGTTGTTTTAAGACTTGTGAAATGCTGTGCTTAAAATCTGATTTTAAAATGCTTTTATATCAAGATTGAAGAGATCCAAATAAAACCTCTTCATTTAGAAACTGCTTTATATCATGGCTCTAAACCAGGTGCTATTTTTTGTCCTCATTGTACATAGGGACTTCATCTGCAGCATCCTCACCATTAAAAAAAGAACAGCCCTTATTT
......................................................................................................((.(((.(((((((.............)))))))))).))..............(((((.((......)).)))))........................................................................
..................................................................................................99..................................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR343335SRR343334SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR037943(GSM510481)
293DcrTN. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR343337SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040038(GSM532923)
G531N. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
.....................................................AGACTTGTGAAATGCACCA.................................................................................................................................................................................. 191.000.00-------------1.00---------------------
...........CCAGCGTCACCAGCTCG.............................................................................................................................................................................................................................. 171.000.00-----------------------------1.00-----
....................................................................................................................................................................................................................CAGCATCCTCACCATGTG.................... 181.000.00---------1.00-------------------------
.............................................................................................................................................................................................................TCATCTGCAGCATCCTTTTT......................... 201.000.00------------------1.00----------------
.............................................................................................................................................................................................................TCATCTGCAGCATCCTTCT.......................... 191.000.00----------------------------1.00------
....................................................................................................................................................................................................................CAGCATCCTCACCATTGG.................... 181.000.00-----------------------1.00-----------
...............................................................................................................................................................................................................................CCATTAAAAAAAGAACACAGC...... 211.000.00--------------------1.00--------------
..........................................................................................................................................................................................................AATGGTGAGGATGCTGCAGATGAAGT...................... 2620.500.50------------------------------0.50----