ID: uc003pmb.2_intron_12_0_chr6_88251713_r.5p
GENE: (7)
chr6:88255134-88255383-


(1)
BREAST
(12)
CELL-LINE
(2)
CERVIX
(1)
HEART
(2)
LIVER
(1)
OTHER
(3)
SKIN
(1)
XRN.ip

Sense strand
ACATCAAGTAATAAGAATAAATTACCTTGGCGATTGGGGCATGCAGTTTGGTAAGTACACTTGAGATTTTATTTTTCATTTCATTGTAAAATTCAATTTGTAAAAACTTTGATCTGGACAGAATATAGGCAGAATCCCATTGGATGAAGTAGTATGTCCTACCTATTTTTTTTTTTTTTTCCCTAATGGCTCTTTTGCATAAAATCTTCTATTTATTTGAGTAATTCTCACCACACAAGTTACCTTTGGG
...................................................................................................................(((((........((...((((....))))...))....)))))......................((....)).............................................................
..........................................................................................................107................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR040025(GSM532910)
G613T. (cervix)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................................................................CTATTTTTTTTTTTTTTTCCCTTG................................................................2416.000.00-7.005.004.00------------------
..................................................................................................................................................................CTATTTTTTTTTTTTTTTCCCTTT................................................................243.000.00-1.001.00---1.00---------------
............................................................................................................................................................TCCTACCTATTTTTTTTTTTTTTTCCCTAATG..............................................................3213.003.00-1.001.001.00------------------
...............................................................................................................ATCTGGACAGAATATAGGCAGAAT...................................................................................................................2413.003.00-----3.00----------------
.....................................................................................................AAAAACTTTGATCTGGACA..................................................................................................................................1912.002.00-----2.00----------------
.................................................................................................................................................................CCTATTTTTTTTTTTTTTTCAAG..................................................................232.000.00---1.00--1.00---------------
.................................................................................................................................................................CCTATTTTTTTTTTTTTTTCCCCAAG...............................................................262.000.00-1.001.00-------------------
............................................................................................................................................................TCCTACCTATTTTTTTTTTTTTTTCCCAATG...............................................................312.000.00------2.00---------------
.............................................................................................................................................................CCTACCTATTTTTTTTTTTTTTTCCCTAATG..............................................................3112.002.00-2.00--------------------
................................................................................................................................................................ACCTATTTTTTTTTTTTTTTAGG...................................................................231.000.00-------1.00--------------
...............................................................................................................ATCTGGACAGAATATAGGCAGAATCCCATT.............................................................................................................3011.001.00-------------1.00--------
.................................................................................................................................................................CCTATTTTTTTTTTTTTTTCCCCG.................................................................241.000.00--1.00-------------------
.............................................................................................................................................................CCTACCTATTTTTTTTTTTTTTTTAG...................................................................261.000.00-1.00--------------------
...................................................................................................GTAAAAACTTTGATCTGGACAG.................................................................................................................................2211.001.00-------------------1.00--
....................................................................................................................................................................ATTTTTTTTTTTTTTTCCCTTCAT..............................................................241.000.00-------1.00--------------
.................................................................................................................................................................CCTATTTTTTTTTTTTTTTCCCACAG...............................................................261.000.00--1.00-------------------
...................................................TAAGTACACTTGAGATTTTATTTTCC.............................................................................................................................................................................261.000.00----1.00-----------------
................ATAAATTACCTTGGCGATTGGGGCA.................................................................................................................................................................................................................2511.001.00-----------1.00----------
..............................................................................................................................................................CTACCTATTTTTTTTTTTTTTTCCCTAATG..............................................................3011.001.00--1.00-------------------
....................................................................................................................................................................ATTTTTTTTTTTTTTTCCCTTTT...............................................................231.000.00------1.00---------------
....................................................................................................................................................................ATTTTTTTTTTTTTTTCCCTAGAAC.............................................................251.000.00-------1.00--------------
....................................................................................................................................................................ATTTTTTTTTTTTTTTCCCGCAG...............................................................231.000.00--------1.00-------------
.................................................................................................................................................................CCTATTTTTTTTTTTTTTTCCCTAAAG..............................................................271.000.00---1.00------------------
...........................................................................................................................................................................................................ATCTTCTATTTATTTGAGACGG.........................221.000.00----1.00-----------------
..............................................................................................................................................................CTACCTATTTTTTTTTTTTTTTTTTG..................................................................261.000.00-1.00--------------------
.................................................................................................................................................................CCTATTTTTTTTTTTTTTTCCCTTTTC..............................................................271.000.00------1.00---------------
..............................................................................................................................................................CTACCTATTTTTTTTTTTTTTTAAG...................................................................251.000.00-1.00--------------------
....................................................................................................................................................................ATTTTTTTTTTTTTTTCCCACGG...............................................................231.000.00--------1.00-------------
..............................................................................................................................................................CTACCTATTTTTTTTTTTTTTTAAT...................................................................251.000.00-1.00--------------------
.................................................................................................................................................................CCTATTTTTTTTTTTTTTCAAT...................................................................221.000.00--1.00-------------------
.................................................................................................................................................................CCTATTTTTTTTTTTTTTCAAG...................................................................221.000.00---1.00------------------
.....................................................................................................................................................................TTTTTTTTTTTTTTTCCCTAACG..............................................................231.000.00-1.00--------------------
..........................................................................................................CTTTGATCTGGACAGAATATAGGCAGAA....................................................................................................................2811.001.00---------------------1.00
................................................................................................................................................................ACCTATTTTTTTTTTTTTTCCCG...................................................................231.000.00----1.00-----------------
..............................................................................................AATTTGTAAAAACTTTGATCTGGAC...................................................................................................................................2511.001.00------------1.00---------
....................................................................................................................................................................ATTTTTTTTTTTTTTTCCCTTTTT..............................................................241.000.00--------1.00-------------
..............................................................................................................................................................CTACCTATTTTTTTTTTTATG.......................................................................211.000.00--1.00-------------------
....................................................................................................................................................................ATTTTTTTTTTTTTTTCCCACTC...............................................................231.000.00-1.00--------------------
.......................................................................................................................................................................................................................................CACACAAGTTACCTTTCT.181.000.00-------1.00--------------
....................................................................................................................................................................ATTTTTTTTTTTTTTTCCCTGTGC..............................................................241.000.00----1.00-----------------
....................................................................TTATTTTTCATTTCATTATA..................................................................................................................................................................201.000.00-1.00--------------------
....................................................................................................................................................................ATTTTTTTTTTTTTTTCCCTAGCAG.............................................................251.000.00----1.00-----------------
............................................................................................................................................................TCCTACCTATTTTTTTTTTTTTTTCCCTAACG..............................................................321.000.00---1.00------------------
...............................................................................................................................................................TACCTATTTTTTTTTTTTCATG.....................................................................221.000.00--1.00-------------------
...................................................................................................................................................................TATTTTTTTTTTTTTTTCCCTTG................................................................231.000.00-1.00--------------------
...................................................................................................................................................................TATTTTTTTTTTTTTTTCCCTCAAT..............................................................251.000.00-1.00--------------------
....................................................................................................................................................................ATTTTTTTTTTTTTTTCCCAGGG...............................................................231.000.00----1.00-----------------
......................................................................................................................................................................TTTTTTTTTTTTTTCCCTAATCAGG...........................................................251.000.00--------1.00-------------
.................................................................................................................................................................CCTATTTTTTTTTTTTTTCTTC...................................................................221.000.00-------1.00--------------
.......................ACCTTGGCGATTGGGGCATGCAGCT..........................................................................................................................................................................................................251.000.00----1.00-----------------
................................................................................................................................................................ACCTATTTTTTTTTTGGG........................................................................181.000.00-1.00--------------------
............................GGCGATTGGGGCATGCAGT...........................................................................................................................................................................................................1911.001.00-----------------1.00----
................................................................................................................TCTGGACAGAATATAGGCAG......................................................................................................................2011.001.00----------------1.00-----
....................................................................................................................................................................ATTTTTTTTTTTTTTTCCCTCCG...............................................................231.000.00------1.00---------------
...........................TGGCGATTGGGGCATGCAGTTTGG.......................................................................................................................................................................................................2411.001.00---------1.00------------
...............................................................................................................ATCTGGACAGAATATAGGCAGAA....................................................................................................................2311.001.00-----1.00----------------
..........................TTGGCGATTGGGGCATGC..............................................................................................................................................................................................................1811.001.00---------------1.00------
.................................................................................................................................................................CCTATTTTTTTTTTTTTTTCCCTTTAG..............................................................271.000.00---1.00------------------
..............................................................................................................................................................CTACCTATTTTTTTTTCATT........................................................................201.000.00--1.00-------------------
..........................TTGGCGATTGGGGCATGCAGTCTGG.......................................................................................................................................................................................................251.000.00----1.00-----------------
...............................................................AGATTTTATTTTTCATTTTGC......................................................................................................................................................................211.000.00----------1.00-----------
....................................................................................................................................................................ATTTTTTTTTTTTTTTCCCGCT................................................................221.000.00------------------1.00---
.......................ACCTTGGCGATTGGGGCATGCAGTTTG........................................................................................................................................................................................................2711.001.00-----1.00----------------
..................................................................................................................................................................CTATTTTTTTTTTTTTTTCCCCTTG...............................................................2530.670.33-0.330.33-------------------
................................................................................................................................................................ACCTATTTTTTTTTTTTTTTCCC...................................................................2320.500.50----0.50-----------------
..................................................................................................................................................................CTATTTTTTTTTTTTTTTCCCCCGG...............................................................2530.330.33--0.33-------------------
..................................................................................................................................................................CTATTTTTTTTTTTTTTTCCC...................................................................2130.330.33--------0.33-------------
............................................................................................................................................................TCCTACCTATTTTTTTT.............................................................................1760.170.17-------0.17--------------

Antisense strand
ACATCAAGTAATAAGAATAAATTACCTTGGCGATTGGGGCATGCAGTTTGGTAAGTACACTTGAGATTTTATTTTTCATTTCATTGTAAAATTCAATTTGTAAAAACTTTGATCTGGACAGAATATAGGCAGAATCCCATTGGATGAAGTAGTATGTCCTACCTATTTTTTTTTTTTTTTCCCTAATGGCTCTTTTGCATAAAATCTTCTATTTATTTGAGTAATTCTCACCACACAAGTTACCTTTGGG
...................................................................................................................(((((........((...((((....))))...))....)))))......................((....)).............................................................
..........................................................................................................107................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR040025(GSM532910)
G613T. (cervix)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................................................................................................................ATTTTTTTTTTTTTTTCCCTGT................................................................ 2233.000.0033.00---------------------
....................................................................................................................................................................ATTTTTTTTTTTTTTTCCCTCACG.............................................................. 246.000.006.00---------------------
.....................................................................................................................................................................TTTTTTTTTTTTTTTCCCTAATAGT............................................................ 254.000.004.00---------------------
.....................................................................................................................................................................TTTTTTTTTTTTTTTCCCTAATGT............................................................. 243.000.003.00---------------------
.....................................................................................................................................................................TTTTTTTTTTTTTTTCCCTAATAT............................................................. 242.000.002.00---------------------
.......................................................................................................................................................................TTTTTTTTTTTTTCCCTAATGT............................................................. 222.000.002.00---------------------
........................................................................................................................................................................TTTTTTTTTTTTCCCTAATTGT............................................................ 221.000.001.00---------------------
.......................................................................................................................................................................TTTTTTTTTTTTTCCCTAATCG............................................................. 221.000.001.00---------------------
.............................................................................................................................................................CCTACCTATTTTTTTTCATT......................................................................... 201.000.00---------1.00------------
.....................................................................................................................................................................TTTTTTTTTTTTTTTCCCTAATAAGT........................................................... 261.000.001.00---------------------
......................................................................................................................................................................TTTTTTTTTTTTTTCCCTAATGT............................................................. 231.000.001.00---------------------
....................................................................................................................................................................ATTTTTTTTTTTTTTTCCCTTTTT.............................................................. 241.000.001.00---------------------
....................................................................................................................................................................ATTTTTTTTTTTTTTTCCCTATAG.............................................................. 241.000.00--------------1.00-------
......................................................................................................................................................................TTTTTTTTTTTTTTCCCTAATTGT............................................................ 241.000.001.00---------------------
.....................................................................................................................................................................TTTTTTTTTTTTTTTCCCTAATAAG............................................................ 251.000.001.00---------------------
...................................................................................................................................................................TATTTTTTTTTTTTTTTCCCTGAT............................................................... 241.000.00--------------------1.00-