ID: uc003pkb.2_intron_24_0_chr6_84375301_r.5p
GENE: (5)
chr6:84388297-84388546-


(2)
B-CELL 		(3)
BRAIN 		(10)
BREAST 		(3)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HEART 		(5)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(3)
SKIN

Sense strand
TGGATGATTCCTCCTAGGAAGTAAGATGAGGGCGTTCAAGAATAATAACAGTAAGGCTTTGGTAAGGCCAAAGAGGTGGGATAATGCTGGGAGATGGTGCCAAGGATTCTCAATAGGGGAGGAGCAGGAGTGGAAGGTAGAAGGTTAGATCCAGTGCTGTGATAACCTTGGAATGAAAAATAGAAAAGAATTTGAGAGACATCTTAGAGATTAGGTTATAGATACAGCAAAGGAGAAAAGTCCCAAATGC
.................................................................................................................(((((.....((((...((((...............))))...)))).....)))))................................................................................
.............................................................................................................110............................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189787TAX577744(Rovira)
total RNA. (breast)		SRR189782TAX577746(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR189784TAX577588(Rovira)
total RNA. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577739(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		TAX577745(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................................................................TCCAGTGCTGTGATAACTGA.................................................................................2011.000.00-2.002.001.001.00--1.00-1.001.00-------1.00---1.00--------
.....................................................................................................................................................TCCAGTGCTGTGATAACCGAAG...............................................................................226.000.006.00------------------------------
.....................................................................................................................................................TCCAGTGCTGTGATAACTGT.................................................................................205.000.00-2.00-1.00--1.00--1.00---------------------
.....................................................................................................................................................TCCAGTGCTGTGATAACCGAAA...............................................................................224.000.004.00------------------------------
.....................................................................................................................................................TCCAGTGCTGTGATAACTGAT................................................................................213.000.00----1.00-------1.00-------1.00----------
.......................................................................................................................................................CAGTGCTGTGATAACTGAA................................................................................193.000.00---------------1.00----------1.001.00---
.....................................................................................................................................................TCCAGTGCTGTGATAACTGAA................................................................................213.000.00-1.00-1.00--------------------1.00------
.....................................................................................................................................................TCCAGTGCTGTGATAACTGTA................................................................................213.000.00-1.00------1.00---1.00------------------
.....................................................................................................................................................TCCAGTGCTGTGATAACTTTA................................................................................212.000.00--------1.00----------------1.00-----
.....................................................................................................................................................TCCAGTGCTGTGATAACTG..................................................................................192.000.00--1.00--1.00-------------------------
..................................................................................................................AGGGGAGGAGCAGGACTCA.....................................................................................................................192.000.00-----------2.00-------------------
.....................................................................................................................................................TCCAGTGCTGTGATATCT...................................................................................181.000.00-----------------1.00-------------
.....................................................................................................................................................TCCAGTGCTGTGATAACGGAA................................................................................211.000.00----------1.00--------------------
.......................................................................................................................................................CAGTGCTGTGATAACTGGA................................................................................191.000.00----------------1.00--------------
.....................................................................................................................................................TCCAGTGCTGTGATAACCCAAG...............................................................................221.000.001.00------------------------------
.....................................................................................................................................................TCCAGTGCTGTGATAACCTTAA...............................................................................221.000.001.00------------------------------
.....................................................................................................................................................TCCAGTGCTGTGATAACCTAAG...............................................................................221.000.001.00------------------------------
.....................................................................................................................................................TCCAGTGCTGTGATAACCGA.................................................................................201.000.00-1.00-----------------------------
.....................................................................................................................................................TCCAGTGCTGTGATAACCTCA................................................................................211.000.00-------1.00-----------------------
.....................................................................................................................................................TCCAGTGCTGTGATAACTTAA................................................................................211.000.00-1.00-----------------------------
.....................................................................................................................................................TCCAGTGCTGTGATAACCTTAAA..............................................................................231.000.001.00------------------------------
..........................................................................................................................AGCAGGAGTGGAAGGATA..............................................................................................................181.000.00-------------1.00-----------------
.....................................................................................................................................................TCCAGTGCTGTGATAACCG..................................................................................191.000.00--1.00----------------------------
.....................................................................................................................................................TCCAGTGCTGTGATAACCTAAA...............................................................................221.000.001.00------------------------------
.....................................................................................................................................................TCCAGTGCTGTGATAACTGAG................................................................................211.000.00----1.00--------------------------
............................................................................................................................................................................ATGAAAAATAGAAAAGAATAAAA.......................................................231.000.00---------------------1.00---------
.....................................................................................................................................................TCCAGTGCTGTGATAACCGAAT...............................................................................221.000.001.00------------------------------
........................................................................................................................................................................TGGAATGAAAAATAGAATGT..............................................................201.000.00--------------1.00----------------
..................................................................................................................AGGGGAGGAGCAGGAGTGGAAGGCAG..............................................................................................................261.000.00-------------------1.00-----------
..................................................................................................................AGGGGAGGAGCAGGACTAC.....................................................................................................................191.000.00-----------------------1.00-------
.....................................................................................................................................................TCCAGTGCTGTGATATCTG..................................................................................191.000.00--1.00----------------------------
.....................................................................................................................................................TCCAGTGCTGTGATAACGGAG................................................................................211.000.00------1.00------------------------
...................................................................................................CCAAGGATTCTCAATTGT.....................................................................................................................................181.000.00--1.00----------------------------
............................................................................TGGGATAATGCTGGGAGAACTT........................................................................................................................................................221.000.001.00------------------------------
.................................................................................................................................................TAGATCCAGTGCTGT..........................................................................................1560.170.17------------------------------0.17

Antisense strand
TGGATGATTCCTCCTAGGAAGTAAGATGAGGGCGTTCAAGAATAATAACAGTAAGGCTTTGGTAAGGCCAAAGAGGTGGGATAATGCTGGGAGATGGTGCCAAGGATTCTCAATAGGGGAGGAGCAGGAGTGGAAGGTAGAAGGTTAGATCCAGTGCTGTGATAACCTTGGAATGAAAAATAGAAAAGAATTTGAGAGACATCTTAGAGATTAGGTTATAGATACAGCAAAGGAGAAAAGTCCCAAATGC
.................................................................................................................(((((.....((((...((((...............))))...)))).....)))))................................................................................
.............................................................................................................110............................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189787TAX577744(Rovira)
total RNA. (breast)		SRR189782TAX577746(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR189784TAX577588(Rovira)
total RNA. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577739(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		TAX577745(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................................................................TCCAGTGCTGTGATAACTT.................................................................................. 191.000.00-----1.00-------------------------
.....................................................................................................................................................................................AGAAAAGAATTTGAGATTTG................................................. 201.000.00----------------------------1.00--
............................................................................TCCCAGCATTATCCCA.............................................................................................................................................................. 1650.400.40-----------------------------0.40-