ID: uc003pjc.2_intron_11_0_chr6_80736232_f.5p
GENE: (12)
chr6:80736182-80736431+


(1)
B-CELL
(1)
BREAST
(5)
CELL-LINE
(1)
HELA
(1)
OTHER
(2)
SKIN

Sense strand
TCTATTTGTAAGACACCAAGCAGCAATACCTTGGATGATTACATGAGCTGGTAATTACTTTGGCCCCTTGCTTGATTGGCAGGGTGGTATGATAGAATTAACATGGGCTTCTGGGCCAAATAAATCTGGGATTAAATCCTGCTCTTTTACTTTAAAGACTTTCCATCTTCATATTATTTTTTCAGCATCAGTGTTTTCATCTATAAAATGGAAAGGGGGAAGTGGTTGCAATAATGCATATTTTTAAGGA
..............................................................................................................................................(((((......)))))............................................................................................
...................................................................................................................................132............................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189785SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR189787SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
..........................................................................................................................................................................ATATTATTTTTTCAGCAATTG...........................................................2143.000.0039.001.00-2.00-1.00----------
..........................................................................................................................................................................ATATTATTTTTTCAGCAATTA...........................................................212.000.002.00---------------
...............................................................................................................................................................................ATTTTTTCAGCATCAGTGTTTTCAC..................................................252.000.00--2.00-------------
........................................................................................................................................TCCTGCTCTTTTACTTTATAT.............................................................................................211.000.00-1.00--------------
...................................................................................................................................................................................................................AAAGGGGGAAGTGGTTGCAAATGC...............241.000.00--------------1.00-
..............................................................................................................................................................................................................AATGGAAAGGGGGAAATAG.........................191.000.00--1.00-------------
........................................................................................................................................TCCTGCTCTTTTACTTTATAG.............................................................................................211.000.00-1.00--------------
.......................................................................................................................................................................................................................GGGGAAGTGGTTGCAAAG.................181.000.00-------1.00--------
.........................................................................................................................................................................CATATTATTTTTTCAGCAATTG...........................................................221.000.001.00---------------
...................GCAGCAATACCTTGGATG.....................................................................................................................................................................................................................1811.001.00-----------1.00----
................................................................CCCTTGCTTGATTGGCA.........................................................................................................................................................................1711.001.00--------1.00-------
...ATTTGTAAGACACCAAGCAGC..................................................................................................................................................................................................................................2111.001.00----------1.00-----
.............................................................................................................................................................ACTTTCCATCTTCATATTATTTTTCCAG.................................................................281.000.00----1.00-----------
........................................................................................................................................TCCTGCTCTTTTACTTTACA..............................................................................................201.000.00-1.00--------------
..........................................................................................................................................................................ATATTATTTTTTCAGCAATT............................................................201.000.00-1.00--------------
.....................................................................................................................................................................................................................AGGGGGAAGTGGTTGCAATAACG..............231.000.00------1.00---------
..........................................................................................................................................................................ATATTATTTTTTCAGCAACAG...........................................................211.000.001.00---------------
.......................................................TACTTTGGCCCCTTGAC..................................................................................................................................................................................171.000.00----1.00-----------
..............................TTGGATGATTACATGAGCTA........................................................................................................................................................................................................201.000.00---------1.00------
..............................................................................................................................................................................................................AATGGAAAGGGGGAAGT...........................1720.500.50---------------0.50

Antisense strand
TCTATTTGTAAGACACCAAGCAGCAATACCTTGGATGATTACATGAGCTGGTAATTACTTTGGCCCCTTGCTTGATTGGCAGGGTGGTATGATAGAATTAACATGGGCTTCTGGGCCAAATAAATCTGGGATTAAATCCTGCTCTTTTACTTTAAAGACTTTCCATCTTCATATTATTTTTTCAGCATCAGTGTTTTCATCTATAAAATGGAAAGGGGGAAGTGGTTGCAATAATGCATATTTTTAAGGA
..............................................................................................................................................(((((......)))))............................................................................................
...................................................................................................................................132............................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189785SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR189787SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
............................................................................TGGCAGGGTGGTATGCTGT........................................................................................................................................................... 191.000.00------------1.00---
.......................................................................................................................................................................TTCATATTATTTTTTCACT................................................................ 191.000.00-------------1.00--