ID: uc003piz.1_intron_0_0_chr6_80341224_f.5p
GENE: SH3BGRL2(1)
chr6:80341174-80341423+


(1)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(5)
BREAST
(13)
CELL-LINE
(5)
CERVIX
(1)
FIBROBLAST
(2)
LIVER
(1)
OTHER
(1)
RRP40.ip
(10)
SKIN

Sense strand
AGAGGATGGTCATCCGCGTGTTCATCGCCTCTTCCTCGGGCTTCGTGGCGGTGAGCGCGGTGGGGGCGGGCAGTAGGTTGGGGTCGCGGGGCGCGGGTCCTGCGGGAGGCGCGCGGCGCTCGTCACTGCGCGTCCTTGCGCTCAGCCGGTCCGCCCGCGGGAGCCCGCGCCCGGCAGGTGATCCATCACACTCCGACAACAATGAAGAGGGCGGGGAGGAAAGGTGGGTGGGGGACCCCGGCCTCACCCA
.....................................................................................((.((((((((((((((((((.((.((.((((..........(((((....)))))...)))))))).))))))))).))))))))).))...........................................................................
.....................................................................70........................................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR343336SRR189783SRR343337SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR343334SRR343335SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR040040(GSM532925)
G612N. (cervix)
GSM532878(GSM532878)
G691T. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577745(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
..........................................................................AGGTTGGGGTCGCGGGT...............................................................................................................................................................1738.000.0015.008.006.00-4.002.00----1.00----------------1.00----------1.00-------
...........................................................................GGTTGGGGTCGCGGGT...............................................................................................................................................................1619.000.004.005.006.00--2.00-1.00--1.00-----------------------------------
...........................................................................GGTTGGGGTCGCGGGTTC.............................................................................................................................................................188.000.002.00-1.005.00------------------------------------------
...........................................................................GGTTGGGGTCGCGGGTTCG............................................................................................................................................................193.000.00------3.00---------------------------------------
........................................................................................................................................................GCCCGCGGGAGCCCGCCCGC..............................................................................201.000.00-----------------------1.00----------------------
..........................................................................AGGTTGGGGTCGCGGGG...............................................................................................................................................................1711.001.00-1.00--------------------------------------------
..........CATCCGCGTGTTCATATGC.............................................................................................................................................................................................................................191.000.00-------1.00--------------------------------------
...........................................................................GGTTGGGGTCGCGGGC...............................................................................................................................................................161.000.00-----------------------------------------1.00----
...............................................................................................................................................................................................TCCGACAACAATGAAGAGGGCGGGGAGGA..............................2911.001.00---------------1.00------------------------------
..........................................................................................................................................................................................................................................ACCCCGGCCTCACCCCCA181.000.00---------1.00------------------------------------
..............................................................................................................................................................................................................GAGGGCGGGGAGGAATT...........................171.000.00-------------------------------------1.00--------
....................................................................................................TGCGGGAGGCGCGCGGGCG...................................................................................................................................191.000.00-------------------1.00--------------------------
................................TCCTCGGGCTTCGTGGCGAT......................................................................................................................................................................................................201.000.00--------------1.00-------------------------------
................................TCCTCGGGCTTCGTGGCGCT......................................................................................................................................................................................................201.000.00-----------------1.00----------------------------
.....................................................................................................GCGGGAGGCGCGCGGTCGG..................................................................................................................................191.000.00------------------1.00---------------------------
...........................................................................GGTTGGGGTCGCGGGCTC.............................................................................................................................................................181.000.00---1.00------------------------------------------
..........................................................................AGGTTGGGGTCGCGG.................................................................................................................................................................1511.001.001.00---------------------------------------------
....................................................................GGCAGTAGGTTGGGGGGT....................................................................................................................................................................181.000.00-----------1.00----------------------------------
.........................................................CGGTGGGGGCGGGCAGTGGAT............................................................................................................................................................................211.000.00------------1.00---------------------------------
................................................................................................................................................................................................CCGACAACAATGAAGAGGGC......................................2011.001.00------------------------------------1.00---------
.....................................................................................................GCGGGAGGCGCGCGGCACG..................................................................................................................................191.000.00---------------------------------------1.00------
..........................................................................AGGTTGGGGTCGCGGGTTC.............................................................................................................................................................191.000.00--------------------------------1.00-------------
............................................................................................................................................................................GGCAGGTGATCCATCCT.............................................................171.000.00-----------------------------------1.00----------
..................................................................................................CCTGCGGGAGGCGCGCGGCG....................................................................................................................................2011.001.00----------------------------------1.00-----------
.....................................................................................................................................................................................TCCATCACACTCCGACAACA.................................................2011.001.00----------------------1.00-----------------------
...........................................................................................................................................................CGCGGGAGCCCGCGCAA..............................................................................171.000.00-1.00--------------------------------------------
.......................................................................................GGGGCGCGGGTCCTG....................................................................................................................................................1540.250.25-------------------------------------------0.25--
.....................................................................................GCGGGGCGCGGGTCC......................................................................................................................................................1570.140.14-----------0.14----------------------------------
................................................................................................................................................................GAGCCCGCGCCCGGC...........................................................................1580.120.12---------------------------------------------0.12
.........................................................CGGTGGGGGCGGGCAG.................................................................................................................................................................................1680.120.12------------0.12---------------------------------

Antisense strand
AGAGGATGGTCATCCGCGTGTTCATCGCCTCTTCCTCGGGCTTCGTGGCGGTGAGCGCGGTGGGGGCGGGCAGTAGGTTGGGGTCGCGGGGCGCGGGTCCTGCGGGAGGCGCGCGGCGCTCGTCACTGCGCGTCCTTGCGCTCAGCCGGTCCGCCCGCGGGAGCCCGCGCCCGGCAGGTGATCCATCACACTCCGACAACAATGAAGAGGGCGGGGAGGAAAGGTGGGTGGGGGACCCCGGCCTCACCCA
.....................................................................................((.((((((((((((((((((.((.((.((((..........(((((....)))))...)))))))).))))))))).))))))))).))...........................................................................
.....................................................................70........................................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR343336SRR189783SRR343337SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR343334SRR343335SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR040040(GSM532925)
G612N. (cervix)
GSM532878(GSM532878)
G691T. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577745(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
................................................................................................GCCGCGCGCCTCCCGCAGGAC..................................................................................................................................... 2112.002.00--------2.00-------------------------------------
..................................................................................................................................................................................................................GCGGGGAGGAAAGGTGGGC..................... 191.000.00-----------------------------1.00----------------
..................................................................................................................................................................................................................GCGGGGAGGAAAGGTGGGCC.................... 201.000.00---------1.00------------------------------------
.........................................................................................................GAGGCGCGCGGCGCTGG................................................................................................................................ 171.000.00----------------------------1.00-----------------
.....................................................................GCAGTAGGTTGGGGTTATA.................................................................................................................................................................. 191.000.00-------------------------1.00--------------------
.....................................................................................................................AAGGACGCGCAGTGACGAGC................................................................................................................. 2011.001.00--------------------1.00-------------------------
......................CATCGCCTCTTCCTCTGAG................................................................................................................................................................................................................. 191.000.00------------------------------------------1.00---
................................................................................................GTCCTGCGGGAGGCGCGCGGCA.................................................................................................................................... 221.000.00--------------------------1.00-------------------
......................CATCGCCTCTTCCTCTGA.................................................................................................................................................................................................................. 181.000.00----------------1.00-----------------------------
..........................................................................AGGTTGGGGTCGCGGGTTTA............................................................................................................................................................ 201.000.00----------------------------------------1.00-----
................................................................................................GTCCTGCGGGAGGCGCGCGGT..................................................................................................................................... 211.000.00-------------1.00--------------------------------
.................................................................................................................................................CCGGTCCGCCCGCGGGGT....................................................................................... 181.000.00---------------------------------1.00------------
..........................................................................................................................................................................................CACACTCCGACAACATAT.............................................. 181.000.00------------------------1.00---------------------
.......................................................................................................................................................CGCCCGCGGGAGCCCGCCCGG.............................................................................. 211.000.00-------------------------------1.00--------------
...........................................................................................................................................................................................................................AAAGGTGGGTGGGGGTATA............ 191.000.00---------------------1.00------------------------
................................................................................GGGTCGCGGGGCGCGAGA........................................................................................................................................................ 181.000.00------------------------------1.00---------------
........................................................................................................................................................................................................CCCGCCCTCTTCATT................................... 1540.250.25--------------------------------------------0.25-