ID: uc003pis.2_intron_4_0_chr6_79924740_r.3p
GENE: (1)
chr6:79924690-79924939-


(8)
B-CELL 		(3)
BRAIN 		(5)
BREAST 		(22)
CELL-LINE 		(1)
FIBROBLAST 		(3)
HEART 		(2)
HELA 		(7)
LIVER 		(4)
OTHER 		(7)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GCAGTTATGCAGCTATCTACCGTGTGTGTGCATGCATGCACGTAGGTGTGTAAAAGACATACCCTGTTGTAATTTACTTTTTCTTTGCAAAAAAATCTGTTGGCTTGTCTTGTCCTGGGAATGAGATAACTTTTTAAAAACATTTTTCTAATGTGTGTTTTCCAATTTAAATACAATTCACTGAAATATTTTCTTTCTAGTCTCCAGAGAATACAGAGGGCAAAGATGGATCCAAAGTAACTAAACAGGA
.............................................................(((..((((((............))))))...........(((.......)))..)))...((((.((..(((((...(((((.....)))))((((((........)))))).......)))))..)).)))).......................................................
...........................................................60..........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR189786SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029124(GSM416753)
HeLa. (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191425(GSM715535)
141genomic small RNA (size selected RNA from . (breast)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
...............................................................................................................................................................................ATTCACTGAAATATTTTCTTTCTAGA.................................................26113.007.00-1.00-2.00------2.00-2.00---1.00------------------1.00-------1.00------1.00--1.00-1.00-------
................................................................................................................................................................................TTCACTGAAATATTTTCTTTCTAGA.................................................25111.001.00-3.00---3.00-------------1.00---1.00----1.00-------1.00-------------------1.00------
...............................................................................................................................................................................ATTCACTGAAATATTTTCTTTCTAGAA................................................2718.007.00----4.00----------1.00-2.00-----------------------1.00---------------------
...............................................................................................................................................................................ATTCACTGAAATATTTTCTTTCTAG..................................................2517.007.006.00--------------------------1.00-----------------------------------
...............................................................................................................................................................................ATTCACTGAAATATTTTCTTTCTATA.................................................265.000.00---3.00------1.00-------------------------------1.00--------------------
................................................................................................................................................................................TTCACTGAAATATTTTCTTTCTAGAA................................................2614.001.00-1.00-------1.00---2.00-------------------------------------------------
..........................................................................................................................................................................................................TCCAGAGAATACAGAGGGCAAAGATGGACCC.................313.000.00--3.00------------------------------------------------------------
........................................................................................................................................................................................................................AGGGCAAAGATGGATCCA................1813.003.00-------2.00------1.00------------------------------------------------
......................................................................................................................................................................................................................AGAGGGCAAAGATGGATCCA................2012.002.00------2.00--------------------------------------------------------
................................................................................................................................................................................TTCACTGAAATATTTTCTTTCTATA.................................................252.000.00----------------------1.00-----------------------1.00----------------
..................................................................................................................................................................................................................ATACAGAGGGCAAAGATGGACCCA................242.000.00--2.00------------------------------------------------------------
......................................................................................................................................................................................................................AGAGGGCAAAGATGGATC..................1812.002.00------1.00--------------------------------------------1.00-----------
...................................................................................................................................................................................ACTGAAATATTTTCTTTCTAGA.................................................222.000.002.00--------------------------------------------------------------
....................................................................................................................................................................................................................ACAGAGGGCAAAGATGGATCCAAAGT............2612.002.00------------------------------1.00---1.00----------------------------
...................................................................................................................................................................................................................TACAGAGGGCAAAGATGGATCCA................2311.001.00-----------1.00---------------------------------------------------
...................................................................................................................................................................................................................TACAGAGGGCAAAGATGT.....................181.000.00-------1.00-------------------------------------------------------
................................................................TGTTGTAATTTACTTTTTGTTC....................................................................................................................................................................221.000.00--------------------------1.00------------------------------------
...................................................................................................................................................................................................................TACAGAGGGCAAAGATGGATCT.................221.000.00--------------------------------------------1.00------------------
...............................................................................................................................................................................................................................AGATGGATCCAAAGTAACTAAATA...241.000.00--------1.00------------------------------------------------------
................................................................................................................................................................................TTCACTGAAATATTTTCTTTCTAG..................................................2411.001.00---------------------------------------------1.00-----------------
......................................................................................................................................................................................................................AGAGGGCAAAGATGGATCCAAAGTA...........2511.001.00--------------------------------------1.00------------------------
.....................................................................................TGCAAAAAAATCTGTTGGCTT................................................................................................................................................2111.001.00---------------------------------1.00-----------------------------
.....................................................................................................................................................................................................................CAGAGGGCAAAGATGGATTTT................211.000.00---------------------------------------1.00-----------------------
...............................................................................................................................................................................ATTCACTGAAATATTTTCTTTCTATAA................................................271.000.00---------1.00-----------------------------------------------------
........................................................................................................................................................................................................................AGGGCAAAGATGGATCCAAAGT............2211.001.00--------1.00------------------------------------------------------
......................................................................................................................................................................................................................AGAGGGCAAAGATGGATCCAAA..............2211.001.00-------------------------1.00-------------------------------------
.............................................................................................................................................................................................................AGAGAATACAGAGGGCAAAGATGGATCC.................2811.001.00------------------1.00--------------------------------------------
................................................................................................................................................................................................................................GATGGATCCAAAGTAACTAAACAG..2411.001.00-----------1.00---------------------------------------------------
................................................................................................................................................................................................................................GATGGATCCAAAGTAACT........1811.001.00----------------1.00----------------------------------------------
................................................................TGTTGTAATTTACTTTTTGGTG....................................................................................................................................................................221.000.00---------------1.00-----------------------------------------------
.......................................................................................................................................................................................................................GAGGGCAAAGATGGATCCA................1911.001.00---------------------1.00-----------------------------------------
....................................................................................................................................................................................................................ACAGAGGGCAAAGATGGATC..................2011.001.00--------------1.00------------------------------------------------
.......................................................................................................................................................................................................................GAGGGCAAAGATGGATCC.................1811.001.00--------1.00------------------------------------------------------
......................................................................................................................................................................................................................AGAGGGCAAAGATGGATCC.................1911.001.00----------------------------------------1.00----------------------
.............................................................................................................................................................................................................................AAAGATGGATCCAAAGTAACTAAACA...2611.001.00------1.00--------------------------------------------------------
......ATGCAGCTATCTACCGTGTGTGTG............................................................................................................................................................................................................................2411.001.00--1.00------------------------------------------------------------
.................................................................................................................................................................................................................AATACAGAGGGCAAAGATGGATT..................231.000.00-------------------------------------------------1.00-------------
....................................................................................................................................................................................................................ACAGAGGGCAAAGATGGATCCAAAGTA...........2711.001.00----------------------------------------------------1.00----------
............................................................................................................................................................................................................................CAAAGATGGATCCAAAG.............1711.001.00--------------------------------1.00------------------------------
................................................................................................................................................................................................................................GATGGATCCAAAGTAACTAAACA...2311.001.00---------1.00-----------------------------------------------------
................................................................................................................................................................................TTCACTGAAATATTTTCTTTCTAGAAA...............................................2711.001.00-----1.00---------------------------------------------------------
......................................................................................................................................................................................................................AGAGGGCAAAGATGGATCCAA...............2111.001.00------------------------1.00--------------------------------------
...............................................................................................................................................................................................................................AGATGGATCCAAAGTAACTAAACAGGA2711.001.00------------------------------------------------------1.00--------
.......................................................................................................................................................................................................................GAGGGCAAAGATGGATCCAAAG.............2211.001.00-----------1.00---------------------------------------------------
................................................................................................................................................................................TTCACTGAAATATTTTCTTTCTCGAA................................................261.000.00-1.00-------------------------------------------------------------
...........................................................................................................................................................................................................................................AGTAACTAAACAGGAATT181.000.00-------------------------------1.00-------------------------------
...................................................................................................................................................................................................................TACAGAGGGCAAAGATGGATCC.................2211.001.00-----------------------------------------------1.00---------------
.........................................................................................................TGTCTTGTCCTGGGAATGAGATA..........................................................................................................................2311.001.00-----------------------------1.00---------------------------------
.......................................................................................................................................................................................................................GAGGGCAAAGATGGATC..................1711.001.00------------------------------------------------1.00--------------
.......................................................................................................................................................................................................GTCTCCAGAGAATACAGAGGG..............................2120.500.50-----------------------------------------------------------0.50---
...................................................................................................................................................................................................................TACAGAGGGCAAAGATGG.....................1820.500.50---------------------------------------------------------0.50-----
....................................................................................................................................................................................................................ACAGAGGGCAAAGATGGAT...................1920.500.50-------------------------------------------------------------0.50-
.................................................................................................................................................................................................................AATACAGAGGGCAAAGAT.......................1820.500.50-------0.50-------------------------------------------------------
...........................................................................................................................................................................................................CCAGAGAATACAGAGGGCAAAGATGG.....................2620.500.50------------------------------------------------------------0.50--
...............................................................................................................................................................................................................AGAATACAGAGGGCAAAGA........................1920.500.50----------------------------------------------------------0.50----
.............................................................................................................................................................................................................AGAGAATACAGAGGGCAAAGATG......................2320.500.50--------0.50------------------------------------------------------
........................................................................................................................................................................................................................................CAAAGTAACTAAACAG..1640.250.25--------------------------------------------------------------0.25

Antisense strand
GCAGTTATGCAGCTATCTACCGTGTGTGTGCATGCATGCACGTAGGTGTGTAAAAGACATACCCTGTTGTAATTTACTTTTTCTTTGCAAAAAAATCTGTTGGCTTGTCTTGTCCTGGGAATGAGATAACTTTTTAAAAACATTTTTCTAATGTGTGTTTTCCAATTTAAATACAATTCACTGAAATATTTTCTTTCTAGTCTCCAGAGAATACAGAGGGCAAAGATGGATCCAAAGTAACTAAACAGGA
.............................................................(((..((((((............))))))...........(((.......)))..)))...((((.((..(((((...(((((.....)))))((((((........)))))).......)))))..)).)))).......................................................
...........................................................60..........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR189786SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029124(GSM416753)
HeLa. (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191425(GSM715535)
141genomic small RNA (size selected RNA from . (breast)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
.........................GTGTGCATGCATGCAGATC.............................................................................................................................................................................................................. 191.000.00-------------------------------------1.00-------------------------
............................................................ACCCTGTTGTAATTTATAAG.......................................................................................................................................................................... 201.000.00--------------------1.00------------------------------------------