ID: uc003pio.3_intron_9_0_chr6_79671528_r.5p
GENE: (3)
chr6:79672614-79672863-


(1)
AGO2.ip 		(1)
B-CELL 		(7)
BRAIN 		(2)
BREAST 		(7)
CELL-LINE 		(1)
HEART 		(1)
KIDNEY 		(15)
LIVER 		(2)
OTHER 		(2)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGAAGAATGTGAAAGAATTGTGGCAGGAATAAACCAGTTGATGACACTAGGTAAGTAAAGCAACACGCGAGTATAGAAAAAACTGGCAGAACACAAAGTAATGGAAAAATACTGTTATTCTCCAACAAAAATTTTTTTTCACAATATCCTAAGTCAGTGGTTTCAGACATTTTAAGTGGAATCTCTTTTTGAATGTGGTCTTAACACAGGACTTAACTATTTAAAACAGTTATAAATTAGGTTATGTTAG
...........................................................................((((..((((((...((.....))..((((((((...((((.......))))......))))))))...........))))))..))))..((((((.(((........)))...))))))......................................................
.....................................................................70................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR343336SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR343337RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)
..........................................................................AGAAAAAACTGGCAGAGCG.............................................................................................................................................................19631.000.00261.00253.0038.0022.006.0012.00-10.005.007.00-4.00-4.003.003.001.00---2.00-----------------------
..........................................................................AGAAAAAACTGGCAGAGC..............................................................................................................................................................18203.000.00111.0079.00-5.005.001.00--1.00--1.00--------------------------------
..........................................................................AGAAAAAACTGGCAGAGCGA............................................................................................................................................................20181.000.0079.0049.0012.0021.007.004.00-2.002.001.00-2.00----2.00---------------------------
...........................................................................GAAAAAACTGGCAGAGCG.............................................................................................................................................................1817.000.0015.00-------2.00-----------------------------------
...........................................................................GAAAAAACTGGCAGAGCGA............................................................................................................................................................199.000.006.00--3.00----------------------------------------
..........................................................................AGAAAAAACTGGCAGAGAG.............................................................................................................................................................198.000.005.001.00--1.00----1.00----------------------------------
.........................................................................TAGAAAAAACTGGCAGAACA.............................................................................................................................................................2016.006.00------------6.00-------------------------------
..........................................................................AGAAAAAACTGGCAGAGGG.............................................................................................................................................................196.000.004.002.00------------------------------------------
.............AGAATTGTGGCAGGACATC..........................................................................................................................................................................................................................194.000.00------2.00----------1.00---------------1.00----------
......................................................................................................................................................................................CTCTTTTTGAATGTGATG..................................................184.000.00-------------------2.00-2.00----------------------
..........................................................................AGAAAAAACTGGCAGAGAGA............................................................................................................................................................204.000.003.001.00------------------------------------------
.............AGAATTGTGGCAGGACAAC..........................................................................................................................................................................................................................193.000.00----------2.00--------------------------1.00------
..........................................................................AGAAAAAACTGGCAGAGTG.............................................................................................................................................................193.000.001.002.00------------------------------------------
..........................................................................AGAAAAAACTGGCAGAGCGT............................................................................................................................................................203.000.00-1.00------1.001.00----------------------------------
.............AGAATTGTGGCAGGACATG..........................................................................................................................................................................................................................192.000.00------1.00---1.00---------------------------------
.............AGAATTGTGGCAGGACA............................................................................................................................................................................................................................172.000.00------1.00---1.00---------------------------------
..........................................................................AGAAAAAACTGGCAGAGGGA............................................................................................................................................................201.000.00-1.00------------------------------------------
.............AGAATTGTGGCAGGAAAACT.........................................................................................................................................................................................................................201.000.00------1.00-------------------------------------
..........................................................................AGAAAAAACTGGCAGAGTGA............................................................................................................................................................201.000.00---------1.00----------------------------------
.............AGAATTGTGGCAGGACAT...........................................................................................................................................................................................................................181.000.00--------------------------1.00-----------------
........GTGAAAGAATTGTGGCAGGA..............................................................................................................................................................................................................................2011.001.00-1.00------------------------------------------
..........................................................................AGAAAAAACTGGCAGAGCT.............................................................................................................................................................191.000.00--------------1.00-----------------------------
.............AGAATTGTGGCAGGAAGATT.........................................................................................................................................................................................................................201.000.00------1.00-------------------------------------
.....AATGTGAAAGAATTGTGGCAGGGT.............................................................................................................................................................................................................................241.000.00--------------------------------------1.00-----
................ATTGTGGCAGGAATAATAG.......................................................................................................................................................................................................................191.000.00-------------------------------1.00------------
..........................................................................AGAAAAAACTGGCAGAGG..............................................................................................................................................................181.000.001.00-------------------------------------------
.............AGAATTGTGGCAGGACAA...........................................................................................................................................................................................................................181.000.00-----------------1.00--------------------------
.............AGAATTGTGGCAGGAAAGTC.........................................................................................................................................................................................................................201.000.00------1.00-------------------------------------
.............AGAATTGTGGCAGGAAAGTA.........................................................................................................................................................................................................................201.000.00-----------------------------1.00--------------
.............AGAATTGTGGCAGGAAGTCT.........................................................................................................................................................................................................................201.000.00------1.00-------------------------------------
...AGAATGTGAAAGAATTGTGG...................................................................................................................................................................................................................................2011.001.00----------------------------------------1.00---
.............AGAATTGTGGCAGGAAATTG.........................................................................................................................................................................................................................201.000.00----------1.00---------------------------------
...............................AACCAGTTGATGACACTAGA.......................................................................................................................................................................................................201.000.00----------------------------1.00---------------
......................................TGATGACACTAGGTAAGTAAAGCAAC..........................................................................................................................................................................................2611.001.00------------------------------------1.00-------
............AAGAATTGTGGCAGGAATAAACCAGTTGATGAC.............................................................................................................................................................................................................3311.001.00------------------1.00-------------------------
.............AGAATTGTGGCAGGAATTCTA........................................................................................................................................................................................................................211.000.00----------1.00---------------------------------
.............................................................................AAAAACTGGCAGAACTGTG..........................................................................................................................................................191.000.00------------------1.00-------------------------
...............................................................................AAACTGGCAGAACACTG..........................................................................................................................................................171.000.00---------------------------------------1.00----
.GAAGAATGTGAAAGAATTGTGG...................................................................................................................................................................................................................................2211.001.00-------------------------1.00------------------
.............AGAATTGTGGCAGGATCT...........................................................................................................................................................................................................................181.000.00----------1.00---------------------------------
.....................................................................................................................................................................GACATTTTAAGTGGAATCTCTTT..............................................................2311.001.00-----------------------------------1.00--------
.............AGAATTGTGGCAGGACAAA..........................................................................................................................................................................................................................191.000.00------1.00-------------------------------------
......................GCAGGAATAAACCAG.....................................................................................................................................................................................................................1501.001.00------------------------------1.00-------------
..........................................................................AGAAAAAACTGGCAGAGA..............................................................................................................................................................181.000.00-1.00------------------------------------------
..AAGAATGTGAAAGAATTGTGGCAGGT..............................................................................................................................................................................................................................261.000.00--1.00-----------------------------------------
............AAGAATTGTGGCAGGAATAAACC.......................................................................................................................................................................................................................2311.001.00----1.00---------------------------------------
.............AGAATTGTGGCAGGAACTCT.........................................................................................................................................................................................................................201.000.00------1.00-------------------------------------
.............AGAATTGTGGCAGGAATTGA.........................................................................................................................................................................................................................201.000.00------1.00-------------------------------------
..........................................................................AGAAAAAACTGGCAGAACACA...........................................................................................................................................................2111.001.001.00-------------------------------------------
.........................................................................TAGAAAAAACTGGCAGAACACAAAA........................................................................................................................................................251.000.00---------------------------1.00----------------
.............AGAATTGTGGCAGGAAAAAC.........................................................................................................................................................................................................................201.000.00------1.00-------------------------------------
.............................................................................AAAAACTGGCAGAACACAAAGT.......................................................................................................................................................2211.001.00------------------------1.00-------------------
............................................................................................................................................................................TAAGTGGAATCTCTTT..............................................................1620.500.50-----------------------------------------0.50--
......................GCAGGAATAAACCAGTTG..................................................................................................................................................................................................................1820.500.50------------------------------------------0.50-

Antisense strand
TGAAGAATGTGAAAGAATTGTGGCAGGAATAAACCAGTTGATGACACTAGGTAAGTAAAGCAACACGCGAGTATAGAAAAAACTGGCAGAACACAAAGTAATGGAAAAATACTGTTATTCTCCAACAAAAATTTTTTTTCACAATATCCTAAGTCAGTGGTTTCAGACATTTTAAGTGGAATCTCTTTTTGAATGTGGTCTTAACACAGGACTTAACTATTTAAAACAGTTATAAATTAGGTTATGTTAG
...........................................................................((((..((((((...((.....))..((((((((...((((.......))))......))))))))...........))))))..))))..((((((.(((........)))...))))))......................................................
.....................................................................70................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR343336SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR343337RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)
.........................................................................................................................CCAACAAAAATTTTTTGGAA............................................................................................................. 201.000.00-----------------1.00--------------------------
.GAAGAATGTGAAAGAACGA...................................................................................................................................................................................................................................... 191.000.00-----------------------1.00--------------------
......................................................................................AGTATTTTTCCATTACTTTGTGTTCTG......................................................................................................................................... 2711.001.00----------------------------------1.00---------
.........................................................................................................................................................................................TTTTTGAATGTGGTCAGA............................................... 181.000.00--------------------------------1.00-----------
.................................................................................................................TTGTTGGAGAATAAC.......................................................................................................................... 1580.120.12-------------------------------------------0.12