| (1) BRAIN | (5) BREAST | (8) CELL-LINE | (5) CERVIX | (1) HEART | (1) HELA | (1) KIDNEY | (2) LIVER | (3) OTHER | (1) RRP40.ip | (2) SKIN | (2) UTERUS |
| CAGCTTCTAAAAGGGCTGAAACTATTAAGAGTTTCTAGTTGGATACGCCTTTTTCCTATTAGAAAGTAGCTTTCCTAAGAAAGCTTTAAGCATCCTTCAGGTTTTGTTGTCTTGGCTAATTCAAATAATTCAGGTTAACCTTTTTTCTTATCTTTAGGTTCAATAACTCTTAATTTTTAAATTTTGTTTGTATGTTTTAGTACTAGAGAATTCTGTGAAACATTCCAAAGCTTTGAATACTCTTTCCAGT ..................................................................................................................((.((((.(((.((((.((((((((((..............))))....)))).)).))))))).))))..))............................................................... ..................................................................................................................115......................................................................188............................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189782 | TAX577740(Rovira) total RNA. (breast) | TAX577743(Rovira) total RNA. (breast) | SRR040030(GSM532915) G013N. (cervix) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR094132(GSM651908) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | TAX577741(Rovira) total RNA. (breast) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | TAX577579(Rovira) total RNA. (breast) | SRR040024(GSM532909) G613N. (cervix) | SRR189784 | SRR040040(GSM532925) G612N. (cervix) | SRR037935(GSM510473) 293cand3. (cell line) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR553575(SRX182781) source: Kidney. (Kidney) | SRR189787 | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR094131(GSM651907) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR191606(GSM715716) 84genomic small RNA (size selected RNA from t. (breast) | SRR029128(GSM416757) H520. (cell line) | SRR040025(GSM532910) G613T. (cervix) | SRR444051(SRX128899) Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin) | SRR342900(SRX096796) small RNA seq of Right atrial tissue. (heart) | SRR040012(GSM532897) G648N. (cervix) | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | DRR001487(DRX001041) "Hela long nuclear cell fraction, LNA(+)". (hela) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330893(SRX091731) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................TTCAAATAATTCAGGATAG................................................................................................................ | 19 | 26.00 | 0.00 | 13.00 | - | - | 1.00 | 2.00 | - | 2.00 | - | - | - | 1.00 | - | 1.00 | - | 1.00 | - | - | - | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | |
| .......................................................................................................................TTCAAATAATTCAGGTTAGGTT............................................................................................................. | 22 | 5.00 | 0.00 | - | 1.00 | - | 1.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| .......................................................................................................................TTCAAATAATTCAGGATAT................................................................................................................ | 19 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................TTCAAATAATTCAGGATCG................................................................................................................ | 19 | 2.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| .......................................................................................................................TTCAAATAATTCAGGTTAGTT.............................................................................................................. | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................AAATAATTCAGGTTAGGGT............................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................TTCAAATAATTCAGGTTATTTT............................................................................................................. | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................TGTGAAACATTCCAAAGCTTTGAATAC.......... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .......................................................................................................................TTCAAATAATTCAGGGAG................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................TTCAAATAATTCAGGTTAG................................................................................................................ | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................TTCAAATAATTCAGGTTAGGA.............................................................................................................. | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................TCTGTGAAACATTCCAAAGCTTTGAATACTCT....... | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................TTCAAATAATTCAGGTTAGGC.............................................................................................................. | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................TTCAAATAATTCAGGTTAAGCT............................................................................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................TTCAAATAATTCAGGTTAGGT.............................................................................................................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TTTTAAATTTTGTTTGTATGTTTTAG.................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................TTAAGAGTTTCTAGTTTCTG.............................................................................................................................................................................................................. | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................AAACATTCCAAAGCTTTGAATATT......... | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................ACTCTTAATTTTTAAACTC.................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ..........................................................TTAGAAAGTAGCTTTCCTAGCT.......................................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................TTCAAATAATTCAGGTTAGGGT............................................................................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................AGAGAATTCTGTGAAACA............................ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .......................................................................................................................TTCAAATAATTCAGGATAC................................................................................................................ | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................CAAATAATTCAGGTTAACCTTTTTTCTTATCTTTAGGTTCAATAACTCTTAATTTTTAAATTTTGTTTG............................................................ | 69 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ....................................................................................................................TAATTCAAATAATTCCCT.................................................................................................................... | 18 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................TTCAAATAATTCAGGACAG................................................................................................................ | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................ATTTTGTTTGTATGTTTTA................................................... | 19 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| ...........................................................................................................................................................................................................TAGAGAATTCTGTGAA............................... | 16 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 |
| CAGCTTCTAAAAGGGCTGAAACTATTAAGAGTTTCTAGTTGGATACGCCTTTTTCCTATTAGAAAGTAGCTTTCCTAAGAAAGCTTTAAGCATCCTTCAGGTTTTGTTGTCTTGGCTAATTCAAATAATTCAGGTTAACCTTTTTTCTTATCTTTAGGTTCAATAACTCTTAATTTTTAAATTTTGTTTGTATGTTTTAGTACTAGAGAATTCTGTGAAACATTCCAAAGCTTTGAATACTCTTTCCAGT ..................................................................................................................((.((((.(((.((((.((((((((((..............))))....)))).)).))))))).))))..))............................................................... ..................................................................................................................115......................................................................188............................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189782 | TAX577740(Rovira) total RNA. (breast) | TAX577743(Rovira) total RNA. (breast) | SRR040030(GSM532915) G013N. (cervix) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR094132(GSM651908) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | TAX577741(Rovira) total RNA. (breast) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | TAX577579(Rovira) total RNA. (breast) | SRR040024(GSM532909) G613N. (cervix) | SRR189784 | SRR040040(GSM532925) G612N. (cervix) | SRR037935(GSM510473) 293cand3. (cell line) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR553575(SRX182781) source: Kidney. (Kidney) | SRR189787 | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR094131(GSM651907) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR191606(GSM715716) 84genomic small RNA (size selected RNA from t. (breast) | SRR029128(GSM416757) H520. (cell line) | SRR040025(GSM532910) G613T. (cervix) | SRR444051(SRX128899) Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin) | SRR342900(SRX096796) small RNA seq of Right atrial tissue. (heart) | SRR040012(GSM532897) G648N. (cervix) | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | DRR001487(DRX001041) "Hela long nuclear cell fraction, LNA(+)". (hela) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330893(SRX091731) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................................................TTAACCTTTTTTCTTAATAG................................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................AAGGTTAACCTGAATTATTTG............................................................................................................ | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................GTTTCTAGTTGGATACGCCTTTCCT................................................................................................................................................................................................... | 25 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................TTTTTTCTTATCTTTCTTA........................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |