ID: uc003phs.2_intron_16_0_chr6_75823461_r.3p
GENE: (49)
chr6:75823411-75823660-


(1)
BREAST
(10)
CELL-LINE
(3)
CERVIX
(3)
HEART
(2)
HELA
(1)
LIVER
(1)
OTHER
(1)
SKIN

Sense strand
TGCTTCCTAAATTTTTCTCCTTCTAAGGAGAAGTCAGAAGGAGCCAGATTAGTATAAATAGCCTCTAATACTACCCATATGAGATTCTGGTGCAAAGATTTAAAAGAGTATCTGTTCTTGATGTTAAAGCAATCAATCTTTCTTTCTTCCTTTCTTTTTTTCTTTCCTCTCCTTTTTCTTTCTTTTGTTTTATCCAACAGAGACCTACACCCAAATGGACTCCCTCCTTCATACACGATTATATTATTAT
..................................................................................................................................................................................(((((.(((.......))).)))))...............................................
....................................................................................................................................................149......................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
.........................................................................................................................................................CTTTTTTTCTTTCCTCTCTAAG...........................................................................223.000.001.00-2.00-------------------
.........................................................................................................................................CTTTCTTTCTTCCTTTCTTTTTTTCTG......................................................................................272.000.002.00---------------------
..........................................................................................................................................TTTCTTTCTTCCTTTCTTTTTTTAGG......................................................................................262.000.00-2.00--------------------
............................................................................................................................................TCTTTCTTCCTTTCTTTTTTTTTTC.....................................................................................252.000.00-2.00--------------------
.............................................................................................................................................CTTTCTTCCTTTCTTTTTTTCTTTTTG..................................................................................272.000.001.00-1.00-------------------
.....................................................................................................................................................CTTTCTTTTTTTCTTTCCTCTTTG.............................................................................241.000.001.00---------------------
........................................................................................................................................................TCTTTTTTTCTTTCCTAAAG..............................................................................201.000.001.00---------------------
.........................................................................................................................................CTTTCTTTCTTCCTTTCTTTTACAG........................................................................................251.000.00--1.00-------------------
.................................................................................................................................................CTTCCTTTCTTTTTTTCTTTAG...................................................................................221.000.001.00---------------------
................................................................................................................................................TCTTCCTTTCTTTTTTTCTTTTTGC.................................................................................251.000.00---1.00------------------
....................................................................................................................................................CCTTTCTTTTTTTCTAAAG...................................................................................191.000.001.00---------------------
............................................................................................................................................................................TTTTTCTTTCTTTTGTTTTGG.........................................................211.000.00-1.00--------------------
..................................................................................................................................................................................................................CCAAATGGACTCCCTCCTT.....................1911.001.00--------1.00-------------
.......................................................................................................................................ATCTTTCTTTCTTCCTTTCTTTTTTTTTTG.....................................................................................301.000.001.00---------------------
.........................................................................................................................................CTTTCTTTCTTCCTTTCTTTTTTTAAG......................................................................................271.000.00--1.00-------------------
............................................................................................................................................TCTTTCTTCCTTTCTTTTTTTCGC......................................................................................241.000.00-1.00--------------------
.............................................................................................................................................CTTTCTTCCTTTCTTTTTTTGGC......................................................................................231.000.00---1.00------------------
.................................................................................................................................................CTTCCTTTCTTTTTTTCTAG.....................................................................................201.000.00--1.00-------------------
........................................................................................................................................TCTTTCTTTCTTCCTTTCTTTTTCAAG.......................................................................................271.000.001.00---------------------
.....................................................................................................................................................................................................CAGAGACCTACACCCGCA...................................181.000.00-----------1.00----------
.................................................................................................................................................CTTCCTTTCTTTTTTTACTG.....................................................................................201.000.001.00---------------------
......................................................................................................................................................................................TTTTGTTTTATCCAACCATA................................................201.000.00-----1.00----------------
................................................................................................................................................TCTTCCTTTCTTTTTTTTTGC.....................................................................................211.000.00-1.00--------------------
.........................................................................................................................................................CTTTTTTTCTTTCCTCTAG..............................................................................191.000.00--1.00-------------------
......................................................................................................................................................................................................................ATGGACTCCCTCCTTCATACACGATTATATTA....3211.001.00----------------1.00-----
.....................................AAGGAGCCAGATTAGTATAAATAGCCTCTAATACTACCCATATGAGATTCTGGTGCAAAGATTTAAAAG................................................................................................................................................6911.001.00------------------1.00---
...........................................................................................................................................TTCTTTCTTCCTTTCTTTTTTTTGG......................................................................................251.000.00---1.00------------------
.........................................................................................................................................CTTTCTTTCTTCCTTTCTTTTTTTCTTTTG...................................................................................301.000.00--1.00-------------------
.....................................................................................................................................................CTTTCTTTTTTTCTTTCCTCTC...............................................................................2211.001.00-1.00--------------------
.................................................................................................................................................CTTCCTTTCTTTTTTTACCG.....................................................................................201.000.001.00---------------------
.............................................................................................................................................CTTTCTTCCTTTCTTTTTTAAG.......................................................................................221.000.001.00---------------------
...........................................................................................................................................................TTTTTTCTTTCCTCTCCTTTCAAG.......................................................................241.000.00----1.00-----------------
......................................................................................................................................................TTTCTTTTTTTCTTTCCTCTCGTG............................................................................241.000.00-1.00--------------------
.........................................................................................................................................................CTTTTTTTCTTTCCTCTCAG.............................................................................201.000.00--1.00-------------------
.............................................................................................................................................CTTTCTTCCTTTCTTTTTTTTAAA.....................................................................................241.000.00--1.00-------------------
.........................................................................................................................................CTTTCTTTCTTCCTTTCTTTTTTAAG.......................................................................................261.000.00--1.00-------------------
..........................................................................................................................................TTTCTTTCTTCCTTTCTTTTTTTCTTTTAAG.................................................................................311.000.00--1.00-------------------
.......................................................................................................................................................TTCTTTTTTTCTTTCCTCTATC.............................................................................221.000.001.00---------------------
.......................................................................................................................................................................TCTCCTTTTTCTTTCTTTTGTTTTACATG......................................................291.000.00----1.00-----------------
................................................................................................................................................TCTTCCTTTCTTTTTTTCTTTTTTA.................................................................................251.000.00-1.00--------------------
.............................................................................................................................................CTTTCTTCCTTTCTTTTTTTGC.......................................................................................221.000.00-1.00--------------------
..........................................................................................................................................................TTTTTTTCTTTCCTCGGCG.............................................................................191.000.00-1.00--------------------
............................................................................................................................................TCTTTCTTCCTTTCTTTTTTTCTGAGA...................................................................................271.000.00---1.00------------------
............................................................................................................................................................TTTTTCTTTCCTCTCCTTTTTTTGA.....................................................................251.000.00-1.00--------------------
...........................................................................................................................................TTCTTTCTTCCTTTCTTTTTTTAG.......................................................................................241.000.001.00---------------------
.....................................................................................................................................................................CCTCTCCTTTTTCTTTCTTTTTG..............................................................231.000.00--1.00-------------------
............................................................................................................................................TCTTTCTTCCTTTCTTTTTTTTGCG.....................................................................................251.000.00-1.00--------------------
........................................................................................................................................TCTTTCTTTCTTCCTTTCTTTTTTTTTG......................................................................................281.000.00--1.00-------------------
........................................................................................................................................TCTTTCTTTCTTCCTTTCTTTTTTAAG.......................................................................................271.000.00-------1.00--------------
..........................................................................................................................................TTTCTTTCTTCCTTTCTTTTTTTTGC......................................................................................261.000.00-1.00--------------------
.................................................................................................................................................CTTCCTTTCTTTTTTATCA......................................................................................191.000.00----1.00-----------------
....................................................................................................................................................CCTTTCTTTTTTTCTTTCGCGT................................................................................221.000.00----1.00-----------------
...........................................................................................................................................TTCTTTCTTCCTTTCTTTTTTTTAAG.....................................................................................261.000.001.00---------------------
.....................................................................................................................................................CTTTCTTTTTTTCTTTCCATCG...............................................................................221.000.00--1.00-------------------
.........................................................................................................................................................CTTTTTTTCTTTCCTCTCTAAT...........................................................................221.000.00--------------1.00-------
...............................................................................................................................................................................TTCTTTCTTTTGTTTTATCCAACAG..................................................2511.001.00-------------1.00--------
....................................................................................................................................................CCTTTCTTTTTTTCTAG.....................................................................................171.000.001.00---------------------
................................................................................................................................................TCTTCCTTTCTTTTTTTCTTTTTAC.................................................................................251.000.00-1.00--------------------
..........................................................................................................................................TTTCTTTCTTCCTTTCTTTTTTTAAG......................................................................................261.000.001.00---------------------
.........................................................................................................................................CTTTCTTTCTTCCTTTCTTAAG...........................................................................................221.000.001.00---------------------
...........................................................................................................................................TTCTTTCTTCCTTTCTTTTTTTGG.......................................................................................241.000.00---1.00------------------
.......................................................................................................................................ATCTTTCTTTCTTCCTTTCTTTTTTCC........................................................................................271.000.00-1.00--------------------
.............................................................................................................................................CTTTCTTCCTTTCTTTTTAAC........................................................................................211.000.00----1.00-----------------

Antisense strand
TGCTTCCTAAATTTTTCTCCTTCTAAGGAGAAGTCAGAAGGAGCCAGATTAGTATAAATAGCCTCTAATACTACCCATATGAGATTCTGGTGCAAAGATTTAAAAGAGTATCTGTTCTTGATGTTAAAGCAATCAATCTTTCTTTCTTCCTTTCTTTTTTTCTTTCCTCTCCTTTTTCTTTCTTTTGTTTTATCCAACAGAGACCTACACCCAAATGGACTCCCTCCTTCATACACGATTATATTATTAT
..................................................................................................................................................................................(((((.(((.......))).)))))...............................................
....................................................................................................................................................149......................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
...................................................................................................................................................................TTCCTCTCCTTTTTCTTTCTGG................................................................. 221.000.00---------1.00------------
.........................................................................................GTGCAAAGATTTAAAAAAT.............................................................................................................................................. 191.000.00-----1.00----------------
...............................................................................................................................................................TTCTTTCCTCTCCTTTTTTTT...................................................................... 211.000.00-----------------1.00----
........................AAGGAGAAGTCAGAAGGCACT............................................................................................................................................................................................................. 211.000.00------1.00---------------
.....................................................................................................................................................................................................GGGTGTAGGTCTCTG...................................... 1531.001.00-------------------0.67-0.33
........................AAGGAGAAGTCAGAAGGCGC.............................................................................................................................................................................................................. 201.000.00----------1.00-----------
..............................................................................................AAGATTTAAAAGAGTATAG......................................................................................................................................... 191.000.001.00---------------------
................................................................................................GATTTAAAAGAGTATCTAG....................................................................................................................................... 191.000.001.00---------------------
......CTAAATTTTTCTCCTTTCA................................................................................................................................................................................................................................. 191.000.00------------1.00---------
.....................................................................................................................................................................................................TTTGGGTGTAGGTCTCTG................................... 1811.001.00---------------1.00------
.....................................................................................................................................................................................................TGGGTGTAGGTCTCTG..................................... 1620.500.50--------------------0.50-