ID: uc003pdf.2_intron_93_0_chr6_56716403_r.3p
GENE: (3)
chr6:56716353-56716602-


(2)
B-CELL
(1)
BRAIN
(8)
BREAST
(7)
CELL-LINE
(9)
CERVIX
(3)
HEART
(2)
LIVER
(2)
OTHER
(28)
SKIN
(1)
XRN.ip

Sense strand
TTGGCCAAGAAAAGATGGTGAGCTCCGGGTTTTATTTTTTTGGTTTCTGCATATTCCCTCAGCTCCGAGGATGGTGCAGGATATGCCAGACCCAGTTTGGGGGCAGGGAGGGCGGCGGTGGTTGGTGGGGGAGATGTTTAAATCATTGAGCATATGTGAGTATTTTGCTGTTAATGCTTTTTCTGTGTCATTCTCTGTAGAGTTCCGGGAACGCGTCCTATCGCTGCTCTATGTCTTCCTCTGCGGATTT
........................................................................................................(((((((((.((((...............((((((((....))))))))....(((((((........)))))))...))))))).))))))......................................................
........................................................................................................105............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR040014(GSM532899)
G623N. (cervix)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040019(GSM532904)
G701T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR040031(GSM532916)
G013T. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040012(GSM532897)
G648N. (cervix)
TAX577744(Rovira)
total RNA. (breast)
SRR040024(GSM532909)
G613N. (cervix)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................GGGCGGCGGTGGTTGGC............................................................................................................................17110.007.00------1.00-1.002.00-------1.00----1.00--1.00--------1.00----1.00----------------1.00------
.............................................................................................................GGGCGGCGGTGGTTGG.............................................................................................................................1617.007.00---1.00----1.00---2.00---1.00---1.00-----------------------1.00------------------
..........................................................................................................GGAGGGCGGCGGTGGT................................................................................................................................1615.005.00--1.001.00---------------2.00----------------------------1.00--------------
..........................................................................................................GGAGGGCGGCGGTGGTGG..............................................................................................................................1814.005.00--1.00----1.001.00------------------------1.00-----------------------------
..............................................................................................................GGCGGCGGTGGTTGGCGGG.........................................................................................................................194.000.00--1.00---------------1.00-----------------1.00-----------------1.00--------
..........................................................................................................GGAGGGCGGCGGTGGTGGC.............................................................................................................................1913.005.00-1.00-1.00--------------------------------------1.00--------------------
.............................................................................................................GGGCGGCGGTGGTTGGCGGG.........................................................................................................................2013.007.00----1.00-------------1.00----------1.00---------------------------------
................................................................................................................CGGCGGTGGTTGGTGGG.........................................................................................................................1712.002.00-1.00--------------1.00----------------------------------------------
....................................................................................................................................................................................TTCTGTGTCATTCTCTGTAG..................................................2012.002.00--------------2.00------------------------------------------------
..............................................................................................................GGCGGCGGTGGTTGGTGGG.........................................................................................................................1912.002.00--------------------1.00---------1.00--------------------------------
.................................ATTTTTTTGGTTTCTAGGA......................................................................................................................................................................................................192.000.002.00--------------------------------------------------------------
..........................................................................................................GGAGGGCGGCGGTGGTGGCG............................................................................................................................2012.005.00------1.00---1.00----------------------------------------------------
.............................................................................................................GGGCGGCGGTGGTTGGT............................................................................................................................1712.002.00---------------------------1.00-------------------------------1.00---
.......................................................................................................CAGGGAGGGCGGCGGGGTA................................................................................................................................191.000.00----------------------------------------1.00----------------------
............................................................................................................AGGGCGGCGGTGGTTGCGGC..........................................................................................................................201.000.00-----------------------------------------1.00---------------------
...................................................................................................GGGGCAGGGAGGGCGGAG.....................................................................................................................................181.000.00----------------------------------------------------------1.00----
................................TATTTTTTTGGTTTCTGGACC.....................................................................................................................................................................................................211.000.001.00--------------------------------------------------------------
.................................................................................................................GGCGGTGGTTGGTGGCGGG......................................................................................................................191.000.00-1.00-------------------------------------------------------------
...................................................................................................GGGGCAGGGAGGGCGAC......................................................................................................................................171.000.00-----------1.00---------------------------------------------------
..........................................................................................................GGAGGGCGGCGGTGGTGGT.............................................................................................................................1911.005.00------------------------1.00--------------------------------------
.........................................................................................................GGGAGGGCGGCGGTGGCGT..............................................................................................................................191.000.00---------------------------------------------------------1.00-----
.......................................................................................................CAGGGAGGGCGGCGGGGAG................................................................................................................................191.000.00-----------------------------------1.00---------------------------
..........................................................................................................GGAGGGCGGCGGTGGTGGG.............................................................................................................................1911.005.00-------------------------------------------1.00-------------------
...............................................................................................................GCGGCGGTGGTTGGTGGGC........................................................................................................................191.000.00----------1.00----------------------------------------------------
.........................CGGGTTTTATTTTTTTTTGT.............................................................................................................................................................................................................201.000.00--------------------------1.00------------------------------------
..................................................................................................................................................................................................CTGTAGAGTTCCGGGAACGCGTCCTATCGCTG........................3211.001.00-----------1.00---------------------------------------------------
.......................................................................................................CAGGGAGGGCGGCGGGGA.................................................................................................................................181.000.00-----------------------------------------------1.00---------------
.........AAAAGATGGTGAGCTCCGGGTTTT.........................................................................................................................................................................................................................2411.001.00-------------------------------------------------------1.00-------
....................................................................................................................................................................................TTCTGTGTCATTCTCTGTAGAAA...............................................231.000.00----------------------------------------------1.00----------------
......................................................................................................GCAGGGAGGGCGGCGGTGGCTGC.............................................................................................................................231.000.00-------------------------------------1.00-------------------------
.......................................................................................................CAGGGAGGGCGGCGGTGGG................................................................................................................................191.000.00----------------------------------------------------1.00----------
................................TATTTTTTTGGTTTCGGAA.......................................................................................................................................................................................................191.000.00--------------------------------------1.00------------------------
..............................................................................................................GGCGGCGGTGGTTGGCGG..........................................................................................................................181.000.00-------1.00-------------------------------------------------------
........................CCGGGTTTTATTTTTTTCT...............................................................................................................................................................................................................191.000.00----------------------------1.00----------------------------------
..........................................................................................................GGAGGGCGGCGGTGGTG...............................................................................................................................1711.005.00------1.00--------------------------------------------------------
..........................GGGTTTTATTTTTTTCGCG.............................................................................................................................................................................................................191.000.00---------------------1.00-----------------------------------------
.....CAAGAAAAGATGGTGAGCTC.................................................................................................................................................................................................................................2011.001.00--------------------------------1.00------------------------------
..............................................................................................................GGCGGCGGTGGTTGGGGGG.........................................................................................................................191.000.00----1.00----------------------------------------------------------
.................................ATTTTTTTGGTTTCTCTAA......................................................................................................................................................................................................191.000.00---------------------1.00-----------------------------------------
.................................................................................................................GGCGGTGGTTGGTGGG.........................................................................................................................1630.670.67------------------------------------------------------------0.33-0.33
...................................................................................................................CGGTGGTTGGTGGGG........................................................................................................................1520.500.500.50--------------------------------------------------------------
.................................................................................................................GGCGGTGGTTGGTGGGC........................................................................................................................1730.330.67-------------------------------------------------------------0.33-

Antisense strand
TTGGCCAAGAAAAGATGGTGAGCTCCGGGTTTTATTTTTTTGGTTTCTGCATATTCCCTCAGCTCCGAGGATGGTGCAGGATATGCCAGACCCAGTTTGGGGGCAGGGAGGGCGGCGGTGGTTGGTGGGGGAGATGTTTAAATCATTGAGCATATGTGAGTATTTTGCTGTTAATGCTTTTTCTGTGTCATTCTCTGTAGAGTTCCGGGAACGCGTCCTATCGCTGCTCTATGTCTTCCTCTGCGGATTT
........................................................................................................(((((((((.((((...............((((((((....))))))))....(((((((........)))))))...))))))).))))))......................................................
........................................................................................................105............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR040014(GSM532899)
G623N. (cervix)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040019(GSM532904)
G701T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR040031(GSM532916)
G013T. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040012(GSM532897)
G648N. (cervix)
TAX577744(Rovira)
total RNA. (breast)
SRR040024(GSM532909)
G613N. (cervix)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................GGGGGCAGGGAGGGCGGGC..................................................................................................................................... 194.000.00-----3.00--------------------------------------------1.00------------
..................................................................................................GGGGGCAGGGAGGGCGGCCG.................................................................................................................................... 202.000.00----1.00------------------------------------------------1.00---------
..................................................................................................GGGGGCAGGGAGGGCGGGCC.................................................................................................................................... 202.000.00-------------1.00-----------------1.00-------------------------------
..................................................................................................GGGGGCAGGGAGGGCGGCC..................................................................................................................................... 192.000.00-------1.00-------------------------------------1.00-----------------
..................................................................................................GGGGGCAGGGAGGGCGGC...................................................................................................................................... 182.000.00-----------------1.00-----1.00---------------------------------------
...................................................................................................................................................................................................ATAGGACGCGTTCCCGGAACTCTACA............................. 2611.001.00-------------1.00-------------------------------------------------
..................................................................................................GGGGGCAGGGAGGGCGGCCC.................................................................................................................................... 201.000.00---------------1.00-----------------------------------------------
..................................................................................................GGGGGCAGGGAGGGCGGG...................................................................................................................................... 181.000.00-------------------------------------------------1.00-------------
..................................................................................................GGGGGCAGGGAGGGCGTC...................................................................................................................................... 181.000.00---------------------------------------------------1.00-----------
..................................................................................................GGGGGCAGGGAGGGCGGCGCCG.................................................................................................................................. 221.000.00---------------1.00-----------------------------------------------