ID: uc003pcy.3_intron_20_0_chr6_56358979_r.3p
GENE: (63)
chr6:56358929-56359178-


(3)
BRAIN
(3)
BREAST
(14)
CELL-LINE
(1)
CERVIX
(3)
FIBROBLAST
(6)
HEART
(2)
HELA
(3)
LIVER
(1)
OTHER
(14)
SKIN

Sense strand
GATTTCCCAGTAGACAGGGTATGACTGTAGGTTTAATTGTTGTTTCAATGTAGTGAAAAGTATAAATGCGTCAAGGTTGCCCTGAGAGAGCAAACAGAGATGAATATATGATGAGGAGCTTGGGACTGATGACCTAGAAAAATAGAACTCTTAAATTTTACTTTCTTAAAGTGATATAACTTGAGGGTATCTCAATTTAGGAAGTCTGTGCTGCCTTTGAAGCTAAAGAAGAAACATATAAGAGTCTGAT
...............................................................................................((((...........((.((..........)).))...(((......)))..))))...................................................................................................
..............................................................................................95...........................................................156............................................................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343336SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038860(GSM458543)
MM426. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
.......................................................................................................ATATATGATGAGGAGCTTGGGACTGATG.......................................................................................................................28139.0039.0013.0011.00-------1.00---2.00-1.00---2.00-1.00---1.001.00---1.00-1.00--1.001.00----1.00---------1.00-
......................................................................................................AATATATGATGAGGAGCTTGGGACTGATG.......................................................................................................................29113.0013.002.00-2.00---2.00-----------1.00---------1.00--------1.00-1.00-----1.001.00-1.00----
......................................................................................................AATATATGATGAGGAGCTTGGGACTGATGA......................................................................................................................3013.003.00--1.00------1.00------------1.00------------------------------
.......................................................................................................................................................................................................GGAAGTCTGTGCTGCCTTT................................1912.002.00-------2.00---------------------------------------------
........................................................................................................................................................................................................GAAGTCTGTGCTGCCTTTGAAGC...........................2312.002.00--1.00---------------1.00----------------------------------
..............................................................................................................................................................................................................TGTGCTGCCTTTGAAGCTAAAGAAGAAACA..............3012.002.00--2.00--------------------------------------------------
.......................................................................................................ATATATGATGAGGAGCTTGGGACTGCTG.......................................................................................................................282.000.00---------------1.00-----------------1.00-------------------
...................................................................................................ATGAATATATGATGAGGAG....................................................................................................................................1912.002.00-2.00---------------------------------------------------
.......................................................................................................ATATATGATGAGGAGCTTGGGACTGA.........................................................................................................................2612.002.00--------------2.00--------------------------------------
.......................................................................................................................................................................................................GGAAGTCTGTGCTGCCTTTGAAGCT..........................2511.001.00------------1.00----------------------------------------
................................................................................................................................................................................................................................AAAGAAGAAACATATAAGAGTCTGA.2511.001.00----------------------------------------1.00------------
............................................................................................................................................................................................................TCTGTGCTGCCTTTGAAGCTAAAGAAGAAAC...............3111.001.00-----------------1.00-----------------------------------
.................................................................................................................................................................................................................................AAGAAGAAACATATATTG.......181.000.00---1.00-------------------------------------------------
.....................................................................................................................................CTAGAAAAATAGAACTCTG..................................................................................................191.000.00--------------------1.00--------------------------------
..............................................................................................................................................................................................................TGTGCTGCCTTTGAAGCTAAAGAAGAAA................2811.001.00------------------------1.00----------------------------
..................................................................................................................................................................................................................................AGAAGAAACATATAAGAGTCTGA.2311.001.00-----------------------1.00-----------------------------
..............................................................................................................................................................................................................TGTGCTGCCTTTGAAGCTAAAGA.....................2311.001.00-----1.00-----------------------------------------------
..............................................................................................................................................................................................................TGTGCTGCCTTTGAAGCTAAAGAAGAAAC...............2911.001.00--1.00--------------------------------------------------
........................................................................AAGGTTGCCCTGAGAGAGC...............................................................................................................................................................1911.001.00------------1.00----------------------------------------
.......................................................................................................................................................................................................GGAAGTCTGTGCTGCCTTTGAAGCTAAAGAAG...................3211.001.00--------------------------------------------1.00--------
.......................................................................................................................................................................................................GGAAGTCTGTGCTGCCTTTGAA.............................2211.001.00-------------------------------1.00---------------------
................................................................................................................GAGGAGCTTGGGACTGCA........................................................................................................................181.000.00----------1.00------------------------------------------
................GGGTATGACTGTAGGTTTA.......................................................................................................................................................................................................................1911.001.00------------------------------------------1.00----------
.................................................................................................................................................................................................................................AAGAAGAAACATATAAGAGTCTG..2311.001.00-----1.00-----------------------------------------------
........................................................................................................................................................................................................GAAGTCTGTGCTGCCTTTGAAGCTAAAGAAGA..................3211.001.00-----------------1.00-----------------------------------
..............................................................................................................................................................................................................TGTGCTGCCTTTGAAGCTAAAGAAG...................2511.001.00-----------------------------------------------1.00-----
........................................................................................................................................................................................................GAAGTCTGTGCTGCCTTTGAAGCTA.........................2511.001.00----------1.00------------------------------------------
........................................................................................................................................................................................................GAAGTCTGTGCTGCCTTT................................1811.001.00--------------------------------------1.00--------------
..............CAGGGTATGACTGTAGGTTT........................................................................................................................................................................................................................2011.001.00----------------------------------1.00------------------
............................................................................................................................................................................................................TCTGTGCTGCCTTTGAAGCT..........................2011.001.00----------------1.00------------------------------------
................................................................................................................GAGGAGCTTGGGACTGCAGG......................................................................................................................201.000.00-----------------------------1.00-----------------------
.........................TGTAGGTTTAATTGTTG................................................................................................................................................................................................................1711.001.00---------------------------1.00-------------------------
.............................................................................................................GATGAGGAGCTTGGGACTGATGACC....................................................................................................................2511.001.00----------------1.00------------------------------------
.......................................................................................................................................................................................................GGAAGTCTGTGCTGCCT..................................1720.500.50----------------------------------------------------0.50

Antisense strand
GATTTCCCAGTAGACAGGGTATGACTGTAGGTTTAATTGTTGTTTCAATGTAGTGAAAAGTATAAATGCGTCAAGGTTGCCCTGAGAGAGCAAACAGAGATGAATATATGATGAGGAGCTTGGGACTGATGACCTAGAAAAATAGAACTCTTAAATTTTACTTTCTTAAAGTGATATAACTTGAGGGTATCTCAATTTAGGAAGTCTGTGCTGCCTTTGAAGCTAAAGAAGAAACATATAAGAGTCTGAT
...............................................................................................((((...........((.((..........)).))...(((......)))..))))...................................................................................................
..............................................................................................95...........................................................156............................................................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343336SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038860(GSM458543)
MM426. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
..............................................AATGTAGTGAAAAGTACTG......................................................................................................................................................................................... 194.000.00--------2.00--2.00-----------------------------------------
........................................................................................................................................GAAAAATAGAACTCTATTG............................................................................................... 192.000.00----2.00------------------------------------------------
..............................................AATGTAGTGAAAAGTATTG......................................................................................................................................................................................... 192.000.00---2.00-------------------------------------------------
................................................................................................................................................................................................................................AAAGAAGAAACATATAAGGTTT.... 221.000.00-------------------------------------------------1.00---
..................................................TAGTGAAAAGTATAAATGATTT.................................................................................................................................................................................. 221.000.00-------------------------------------------1.00---------
..............................................AATGTAGTGAAAAGTCC........................................................................................................................................................................................... 171.000.00--------------------------------------------------1.00--
..............................................................................................................................................................................................................................CTAAAGAAGAAACATTAGC......... 191.000.00----1.00------------------------------------------------