ID: uc003pcs.2_intron_22_0_chr6_56029621_r.3p
GENE: (7)
chr6:56029571-56029820-


(6)
BREAST
(7)
CELL-LINE
(2)
CERVIX
(3)
LIVER
(1)
OTHER
(34)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
GTATTCTCCTATATGAATGGAGTAGTAACATGTATAGATAGGTGACTTTTTAGGATAAATGCAGGGAAATATTTTGGTTTTTGTTGGTTTTCATACTTCATATATCTCTAATCTGGATGGTGAAATATCTGTAAATTAGGCTGATAATTTATAAATTTTATTTAAAACATTTTAAAACACATTTGTTGTTTTTCTTTCAGAATGGAGAGGTAGGCTTGGATACTATTGTTCCCCTTAAGGTAATATTTGT
..........................................................................(((((((.....(((((.....(((((.(((((.......)))))))))).....(((((((((......)))))))))..........))))).....))))).)).....................................................................
........................................................................73.............................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR343335SRR343334SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577580(Rovira)
total RNA. (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.............................................................................TTTTTGTTGGTTTTCGGA...........................................................................................................................................................1825.000.00----1.00----2.002.001.00-2.001.001.00-2.00-1.00-1.00--1.00---1.00--------1.00-1.00-------1.00---1.001.001.001.00-1.00-1.00-
.............................................................................TTTTTGTTGGTTTTCGGAA..........................................................................................................................................................1921.000.007.00--3.00-2.00--1.00-1.00---1.00------------------1.001.001.00------1.00--1.00-----------1.00--
.............................................................................TTTTTGTTGGTTTTCGG............................................................................................................................................................1712.000.00----2.00--2.00-1.00-1.00---1.00----1.00-1.00----1.00-------------1.00-------1.00----------
..............................................................................TTTTGTTGGTTTTCAGAA..........................................................................................................................................................1810.000.001.00--2.001.002.00--2.00---------1.00-------------1.00---------------------------
..............................................................................TTTTGTTGGTTTTCAGAAC.........................................................................................................................................................194.000.00-----------------------------1.001.00-------1.00-1.00-------------------
............................................................................................................................................................................................TTTTTCTTTCAGAATGTAAG..........................................202.000.00--1.00---------1.00-----------------------------------------------
............................................................................GTTTTTGTTGGTTTTCGG............................................................................................................................................................181.000.00-------1.00----------------------------------------------------
..........................................................ATGCAGGGAAATATTTTTTTT...........................................................................................................................................................................211.000.00--------------------------1.00---------------------------------
....................................................................................................................................................................................ATTTGTTGTTTTTCTTTTAAA.................................................211.000.00-----------------------------------------------------------1.00
.............................................................................TTTTTGTTGGTTTTCGTAA..........................................................................................................................................................191.000.00-------------------------1.00----------------------------------
............................................................................................................................................................................................TTTTTCTTTCAGAATGTTAG..........................................201.000.00------------1.00-----------------------------------------------
.....................................................................................................................................................................AACATTTTAAAACACACACA.................................................................201.000.00------------------------------------1.00-----------------------
.............................................................................TTTTTGTTGGTTTTCGC............................................................................................................................................................171.000.00------------------------------------------------1.00-----------
...................GAGTAGTAACATGTATAGATAGGT...............................................................................................................................................................................................................2411.001.00--------------------------------------------------1.00---------
.......................................................................................................................................................................................TGTTGTTTTTCTTTCAAGC................................................191.000.00----------------------------------------------1.00-------------
..........................................................................TGGTTTTTGTTGGTTTTCGG............................................................................................................................................................201.000.00----1.00-------------------------------------------------------
............................................................................GTTTTTGTTGGTTTTCCC............................................................................................................................................................181.000.00--------------------------------------------1.00---------------
....................AGTAGTAACATGTATAGATAGGTGAC............................................................................................................................................................................................................2611.001.00-------------------------------1.00----------------------------
.............................................................................TTTTTGTTGGTTTTCTTAA..........................................................................................................................................................191.000.00-------------------------------------------1.00----------------
.............................................................................TTTTTGTTGGTTTTCGGTA..........................................................................................................................................................191.000.00-----------------------1.00------------------------------------
.......................................................................................................................................................................................................................TTGGATACTATTGTTGGAA................191.000.00----------------1.00-------------------------------------------

Antisense strand
GTATTCTCCTATATGAATGGAGTAGTAACATGTATAGATAGGTGACTTTTTAGGATAAATGCAGGGAAATATTTTGGTTTTTGTTGGTTTTCATACTTCATATATCTCTAATCTGGATGGTGAAATATCTGTAAATTAGGCTGATAATTTATAAATTTTATTTAAAACATTTTAAAACACATTTGTTGTTTTTCTTTCAGAATGGAGAGGTAGGCTTGGATACTATTGTTCCCCTTAAGGTAATATTTGT
..........................................................................(((((((.....(((((.....(((((.(((((.......)))))))))).....(((((((((......)))))))))..........))))).....))))).)).....................................................................
........................................................................73.............................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR343335SRR343334SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577580(Rovira)
total RNA. (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.............................ATGTATAGATAGGTGAATG.......................................................................................................................................................................................................... 1910.000.00-6.004.00---------------------------------------------------------
.......................................................................................................................................................................................................................TTGGATACTATTGTTACC................. 185.000.00------4.00---------1.00-------------------------------------------
.........TATATGAATGGAGTATTAG.............................................................................................................................................................................................................................. 191.000.00-------------------------------------------------------1.00----