ID: uc003pap.3_intron_3_0_chr6_52317636_f.3p
GENE: (4)
chr6:52318693-52318942+


(1)
B-CELL
(1)
BREAST
(7)
CELL-LINE
(1)
CERVIX
(1)
HEART
(2)
LIVER
(1)
OTHER
(4)
SKIN
(1)
TESTES

Sense strand
AGCTGCTGACATATAGTACATAATTTCAGATGTTTTAGTATGTTTGATGAATATTTCTTTTTTTTTCAATTTACCCCATCTGAAATTACTTCATAGTCTTTCCAGCTAGTCTTTCCATCGTTGATACATAATTGCCAAAGTAGCCAAGTTGAACTCCCTACTTTTAGGATTCTTGAGTCACTACTTTGGATTCTTCAAAGGTCCTTCGATTCTATGCAATCTGGGATGATACAGACAGCATGTATGGTGA
...............................................................................(((.((..(((....)))..)).)))................((((.((......(((((((((...((.....))..)))))))..)).....)).))))......................................................................
..................................................51...............................................................................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189785SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191432(GSM715542)
169genomic small RNA (size selected RNA from . (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
........................................................CTTTTTTTTTCAATTTCTAG..............................................................................................................................................................................2022.000.009.001.008.004.00---------------
..................................................ATATTTCTTTTTTTTTCAATTTACCCCATCTG........................................................................................................................................................................3213.003.001.001.001.00----------------
....................................................ATTTCTTTTTTTTTCAATTTACCCCATCTG........................................................................................................................................................................3012.002.00----2.00--------------
.....................................................TTTCTTTTTTTTTCAATTTAAATG.............................................................................................................................................................................242.000.00-2.00-----------------
................TACATAATTTCAGATGTTTTAGT...................................................................................................................................................................................................................2312.002.00--------2.00----------
..................................................................................................................................................................TTTAGGATTCTTGAGTCACT....................................................................2012.002.00-------2.00-----------
...................................................TATTTCTTTTTTTTTCGGAG...................................................................................................................................................................................202.000.00------2.00------------
.................................................AATATTTCTTTTTTTTTCCCAG...................................................................................................................................................................................221.000.00-1.00-----------------
..................................................ATATTTCTTTTTTTTTCAAATG..................................................................................................................................................................................221.000.00---1.00---------------
........................................................CTTTTTTTTTCAATTTCAG...............................................................................................................................................................................191.000.00---1.00---------------
.............................................................................................................................................AGCCAAGTTGAACTCTG............................................................................................171.000.00------------1.00------
.................................................................................................................................................................................................................................ATGATACAGACAGCATGTATGGTGA2511.001.00---------------1.00---
.......................................................TCTTTTTTTTTCAATTTACCCCATCTG........................................................................................................................................................................2711.001.00--1.00----------------
....................................................ATTTCTTTTTTTTTCAAACCG.................................................................................................................................................................................211.000.00-1.00-----------------
.....................................................TTTCTTTTTTTTTCAATACAG................................................................................................................................................................................211.000.00---1.00---------------
.....................................................TTTCTTTTTTTTTCAATTGGG................................................................................................................................................................................211.000.00-------------1.00-----
....................................................ATTTCTTTTTTTTTCAAACAG.................................................................................................................................................................................211.000.00-1.00-----------------
.......................................................................................................................................................AACTCCCTACTTTTAGGATTCTTG...........................................................................2411.001.00--------------1.00----
....................................................................................................................................................................TAGGATTCTTGAGTCACTACTTTGGAT...........................................................2711.001.00-----------------1.00-
.....................................................TTTCTTTTTTTTTCAATTTTAAG..............................................................................................................................................................................231.000.00-1.00-----------------
.................................................AATATTTCTTTTTTTTTCAATTTACCCCATCTG........................................................................................................................................................................3311.001.001.00------------------
.......................................................TCTTTTTTTTTCAATTTATC...............................................................................................................................................................................201.000.00-1.00-----------------
......................................................TTCTTTTTTTTTCAACCAG.................................................................................................................................................................................191.000.00-1.00-----------------
...............................................................................................................................ATAATTGCCAAAGTAGCCAAGTTGAACTCC.............................................................................................3011.001.00----------1.00--------
....................................................ATTTCTTTTTTTTTCAATTTTG................................................................................................................................................................................221.000.00----1.00--------------
................................TTTTAGTATGTTTGAAT.........................................................................................................................................................................................................171.000.00---------1.00---------
....................................................ATTTCTTTTTTTTTCAATTTTAG...............................................................................................................................................................................231.000.00-1.00-----------------
..................................................................................................................................................................................................................................TGATACAGACAGCATGTA......1811.001.00----------------1.00--
...................................................................................................................................................................................................................................GATACAGACAGCATGAC......171.000.00------------------1.00

Antisense strand
AGCTGCTGACATATAGTACATAATTTCAGATGTTTTAGTATGTTTGATGAATATTTCTTTTTTTTTCAATTTACCCCATCTGAAATTACTTCATAGTCTTTCCAGCTAGTCTTTCCATCGTTGATACATAATTGCCAAAGTAGCCAAGTTGAACTCCCTACTTTTAGGATTCTTGAGTCACTACTTTGGATTCTTCAAAGGTCCTTCGATTCTATGCAATCTGGGATGATACAGACAGCATGTATGGTGA
...............................................................................(((.((..(((....)))..)).)))................((((.((......(((((((((...((.....))..)))))))..)).....)).))))......................................................................
..................................................51...............................................................................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189785SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191432(GSM715542)
169genomic small RNA (size selected RNA from . (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
........................................................CTTTTTTTTTCAATTTGCTC.............................................................................................................................................................................. 202.000.00-----2.00-------------
...............................................................................................................................................................................................TCTTCAAAGGTCCTTCGC......................................... 181.000.00-----------1.00-------