ID: uc003pah.1_intron_37_0_chr6_51893150_r.3p
GENE: PKHD1(29)
chr6:51893100-51893349-


(15)
B-CELL
(3)
BRAIN
(33)
BREAST
(50)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(7)
HEART
(2)
HELA
(1)
KIDNEY
(3)
LIVER
(1)
OTHER
(10)
SKIN
(1)
XRN.ip

Sense strand
AGAATGAGACCTGTCTCAAAAAAAAAAAAAAATAGTTGTTAGAAGTTTCTTGAAAAATTTAGGTTGGTATCGTAACTCTTAAGAGTATTATGCATAGGGGTGACTGTGAATTTAATCCAAAAAGACAGTTTTAGAATTGAATAGATGGTTGAGCCCACAAACCCCACATGTCAGAGGCTATTGGATTCTTCTCAACACAGGCGGTGAGACCCTGGTCATTGGAGTGGCGAGGCTGATGAACTATACGGAT
......................................................(((((((.....((((.((.((((....)))))).))))....((....)).))))))).........................................................................................................................................
..................................................51.............................................................114......................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553574(SRX182780)
source: Heart. (Heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR038855(GSM458538)
D10. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029127(GSM416756)
A549. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR038863(GSM458546)
MM603. (cell line)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)
SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR191555(GSM715665)
195genomic small RNA (size selected RNA from . (breast)
SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)
SRR037935(GSM510473)
293cand3. (cell line)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040037(GSM532922)
G243T. (cervix)
SRR029129(GSM416758)
SW480. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR191501(GSM715611)
8genomic small RNA (size selected RNA from to. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)
SRR040036(GSM532921)
G243N. (cervix)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR191634(GSM715744)
98genomic small RNA (size selected RNA from t. (breast)
SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR191438(GSM715548)
175genomic small RNA (size selected RNA from . (breast)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR038862(GSM458545)
MM472. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
....................................................AAAAATTTAGGTTGGGA.....................................................................................................................................................................................17120.000.0057.00-6.00-10.00---8.003.00-6.00--4.00--------3.00------------1.00-2.00-1.00-----2.00-1.00-2.00--1.001.00-1.00--1.00------------1.001.00----1.001.00---1.00--1.00-------------------1.00--------1.001.00----------1.00-
....................................................AAAAATTTAGGTTGGGAA....................................................................................................................................................................................1885.000.008.00-7.00-4.00-4.00-2.006.00--5.001.001.004.00--4.002.001.00---1.00--1.00-1.002.00-1.00-2.00-----1.00--2.00-1.00--1.001.00---1.00--1.001.00----1.00--1.001.00-1.00--1.00---1.00------1.00------1.00-1.001.00-------1.00--1.001.00-----1.001.00------1.001.00--1.00---1.00--
....................................................AAAAATTTAGGTTGGGACA...................................................................................................................................................................................1977.000.00--3.00--13.00---1.006.00-1.005.00--3.00--3.001.00-3.00-1.003.001.002.002.00----1.00-2.001.001.00-1.00--2.00-2.001.00-1.00-1.00-1.002.00----1.00--1.00--1.00------------1.001.00--1.00--------------1.00-1.00----1.00-----1.00--------1.00---1.00---1.00---
....................................................AAAAATTTAGGTTGGGAAA...................................................................................................................................................................................1927.000.001.00-2.00---6.00--------1.00--1.00--------------1.00-----1.00--------------1.002.00--1.00--------1.00-1.001.00----------------1.00--1.00--1.00----1.00----------1.00--1.00-----------1.00----
....................................................AAAAATTTAGGTTGGGAC....................................................................................................................................................................................1814.000.00--3.00-1.002.00--------1.001.00----1.00-------1.00---1.00--------------1.00------------------------------------1.00--------------1.00-----------------------------
....................................................AAAAATTTAGGTTGGGGAA...................................................................................................................................................................................194.000.00--------1.00-------------1.00----------------------------------------------------------------------------------1.00--------------1.00--------
....................................................AAAAATTTAGGTTGGGATC...................................................................................................................................................................................194.000.00---------------------4.00-----------------------------------------------------------------------------------------------------------
....................................................AAAAATTTAGGTTGGGCAA...................................................................................................................................................................................193.000.00----------1.00------------------------------1.00-----------------------------------------------------------------1.00---------------------
....................................................AAAAATTTAGGTTGGGTA....................................................................................................................................................................................183.000.00------------------------1.00----------------------------------------------------------------------------------------1.001.00--------------
....................................................AAAAATTTAGGTTGGGGCA...................................................................................................................................................................................192.000.00-----------------------------------------1.00------------------------------------------------------1.00--------------------------------
....................................................AAAAATTTAGGTTGGTACA...................................................................................................................................................................................192.000.00----------------1.00---1.00------------------------------------------------------------------------------------------------------------
....................................................AAAAATTTAGGTTGGGTAA...................................................................................................................................................................................191.000.00-------------------------------------------------------------1.00-------------------------------------------------------------------
....................................................AAAAATTTAGGTTGGTAAAAA.................................................................................................................................................................................211.000.00------1.00--------------------------------------------------------------------------------------------------------------------------
.....................................................AAAATTTAGGTTGGTAAAAA.................................................................................................................................................................................201.000.00-----------------------------1.00---------------------------------------------------------------------------------------------------
.....................................................AAAATTTAGGTTGGTATA...................................................................................................................................................................................181.000.00----------------1.00----------------------------------------------------------------------------------------------------------------
....................................................AAAAATTTAGGTTGGGGTA...................................................................................................................................................................................191.000.00---------------------------------------------------------------------------------1.00-----------------------------------------------
....................................................AAAAATTTAGGTTGGGAG....................................................................................................................................................................................181.000.00----------------------------------------------------------------1.00----------------------------------------------------------------
....................................................AAAAATTTAGGTTGGGTT....................................................................................................................................................................................181.000.00------1.00--------------------------------------------------------------------------------------------------------------------------
....................................................AAAAATTTAGGTTGGGAGA...................................................................................................................................................................................191.000.00-------------------------------------------------------------------------------------1.00-------------------------------------------
..................................GTTGTTAGAAGTTTCAGG......................................................................................................................................................................................................181.000.00---------------------------------------------------------------------------------------------------------------------------1.00-----
.....................................................AAAATTTAGGTTGGTACA...................................................................................................................................................................................181.000.00--------------------------1.00------------------------------------------------------------------------------------------------------
....................................................AAAAATTTAGGTTGGTAAA...................................................................................................................................................................................191.000.00-----------------------------1.00---------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................GTGGCGAGGCTGATG............1511.001.00----------------------------------------------------------------------------------------------1.00----------------------------------
....................................................AAAAATTTAGGTTGGCAA....................................................................................................................................................................................181.000.00------1.00--------------------------------------------------------------------------------------------------------------------------
....................................................AAAAATTTAGGTTGGGAT....................................................................................................................................................................................181.000.001.00--------------------------------------------------------------------------------------------------------------------------------
....................................................AAAAATTTAGGTTGGGTTA...................................................................................................................................................................................191.000.00------1.00--------------------------------------------------------------------------------------------------------------------------
....................................................AAAAATTTAGGTTGGCACA...................................................................................................................................................................................191.000.00----------1.00----------------------------------------------------------------------------------------------------------------------
....................................................AAAAATTTAGGTTGGGTAG...................................................................................................................................................................................191.000.00----------------------------------------------------------------------------------------1.00----------------------------------------
....................................................AAAAATTTAGGTTGGGATA...................................................................................................................................................................................191.000.00--------------------1.00------------------------------------------------------------------------------------------------------------
..................................................TGAAAAATTTAGGTTGGGGCA...................................................................................................................................................................................211.000.00-------------------------------------1.00-------------------------------------------------------------------------------------------
....................................................AAAAATTTAGGTTGGGCC....................................................................................................................................................................................181.000.00---------------------------------------------------1.00-----------------------------------------------------------------------------
....................................................AAAAATTTAGGTTGGGACC...................................................................................................................................................................................191.000.00--------------------------1.00------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................TGGAGTGGCGAGGCTGATGAACTATACGGA.3011.001.00--------------------------------------------------------------------------1.00------------------------------------------------------
..............................................................................................TAGGGGTGACTGTGAATT..........................................................................................................................................1820.500.50------------------------------0.50--------------------------------------------------------------------------------------------------
....................................................AAAAATTTAGGTTGGT......................................................................................................................................................................................1640.250.25------------------------------0.25--------------------------------------------------------------------------------------------------

Antisense strand
AGAATGAGACCTGTCTCAAAAAAAAAAAAAAATAGTTGTTAGAAGTTTCTTGAAAAATTTAGGTTGGTATCGTAACTCTTAAGAGTATTATGCATAGGGGTGACTGTGAATTTAATCCAAAAAGACAGTTTTAGAATTGAATAGATGGTTGAGCCCACAAACCCCACATGTCAGAGGCTATTGGATTCTTCTCAACACAGGCGGTGAGACCCTGGTCATTGGAGTGGCGAGGCTGATGAACTATACGGAT
......................................................(((((((.....((((.((.((((....)))))).))))....((....)).))))))).........................................................................................................................................
..................................................51.............................................................114......................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553574(SRX182780)
source: Heart. (Heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR038855(GSM458538)
D10. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029127(GSM416756)
A549. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR038863(GSM458546)
MM603. (cell line)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)
SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR191555(GSM715665)
195genomic small RNA (size selected RNA from . (breast)
SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)
SRR037935(GSM510473)
293cand3. (cell line)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040037(GSM532922)
G243T. (cervix)
SRR029129(GSM416758)
SW480. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR191501(GSM715611)
8genomic small RNA (size selected RNA from to. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)
SRR040036(GSM532921)
G243N. (cervix)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR191634(GSM715744)
98genomic small RNA (size selected RNA from t. (breast)
SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR191438(GSM715548)
175genomic small RNA (size selected RNA from . (breast)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR038862(GSM458545)
MM472. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................AAAAAAAAAAAAAATAGTTGAG.................................................................................................................................................................................................................. 2220.000.00-7.00-6.00---6.00-----------------------1.00-------------------------------------------------------------------------------------------------
.................AAAAAAAAAAAAAAATAGTTGAG.................................................................................................................................................................................................................. 2312.000.00-8.00-3.00---1.00-------------------------------------------------------------------------------------------------------------------------
................ACAACTATTTTTTTTTTTTTTTG................................................................................................................................................................................................................... 2333.003.00-1.67-0.67---------------------------0.67-------------------------------------------------------------------------------------------------
...................AAAAAAAAAAAAATAGTTGTGG................................................................................................................................................................................................................. 222.000.00-2.00-------------------------------------------------------------------------------------------------------------------------------
.................AAAAAAAAAAAAAAATAGTTGAAG................................................................................................................................................................................................................. 241.000.00---1.00-----------------------------------------------------------------------------------------------------------------------------
.....................AAAAAAAAAAATAGTTGCAG................................................................................................................................................................................................................. 201.000.00-1.00-------------------------------------------------------------------------------------------------------------------------------
.......................AAAAAAAAATAGTTGTTAG................................................................................................................................................................................................................ 191.000.00-1.00-------------------------------------------------------------------------------------------------------------------------------
......................AAAAAAAAAATAGTTGCTAG................................................................................................................................................................................................................ 201.000.00---1.00-----------------------------------------------------------------------------------------------------------------------------
.........CCTGTCTCAAAAAAAAAAAAAAATCTCC..................................................................................................................................................................................................................... 281.000.00-----------------1.00---------------------------------------------------------------------------------------------------------------
..............CTCAAAAAAAAAAAAAAATAGTGG.................................................................................................................................................................................................................... 241.000.00-----------------1.00---------------------------------------------------------------------------------------------------------------
...............TCAAAAAAAAAAAAAAATAATG..................................................................................................................................................................................................................... 221.000.00--------------------------------------------------------------------------------------------------------------------------------1.00
...................AAAAAAAAAAAAATAGTTGTAG................................................................................................................................................................................................................. 221.000.00---1.00-----------------------------------------------------------------------------------------------------------------------------
.................AAAAAAAAAAAAAAATAGTCTAG.................................................................................................................................................................................................................. 231.000.00-----------------1.00---------------------------------------------------------------------------------------------------------------
....................AAAAAAAAAAAATAGTTGCAG................................................................................................................................................................................................................. 211.000.00---1.00-----------------------------------------------------------------------------------------------------------------------------
.................AAAAAAAAAAAAAAATAGTTACCG................................................................................................................................................................................................................. 241.000.00-------------------------------1.00-------------------------------------------------------------------------------------------------
...............TCAAAAAAAAAAAAAAATAGATTT................................................................................................................................................................................................................... 241.000.00-----------------1.00---------------------------------------------------------------------------------------------------------------
.................AAAAAAAAAAAAAAATAGTTAATG................................................................................................................................................................................................................. 241.000.00-------1.00-------------------------------------------------------------------------------------------------------------------------
.............TCTCAAAAAAAAAAAAAAATAGTGGG................................................................................................................................................................................................................... 261.000.00-----------------------------------------------------------------------------------------------------1.00---------------------------
..................AAAAAAAAAAAAAATAGTTGTC.................................................................................................................................................................................................................. 221.000.00---1.00-----------------------------------------------------------------------------------------------------------------------------
..................AAAAAAAAAAAAAATAGTTGTA.................................................................................................................................................................................................................. 221.000.00-------1.00-------------------------------------------------------------------------------------------------------------------------
..................AAAAAAAAAAAAAATAGTTGTAATG............................................................................................................................................................................................................... 251.000.00---1.00-----------------------------------------------------------------------------------------------------------------------------
.....................AAAAAAAAAAATAGTTGTTAGG............................................................................................................................................................................................................... 221.000.00---1.00-----------------------------------------------------------------------------------------------------------------------------
.................AAAAAAAAAAAAAAATAGTCTA................................................................................................................................................................................................................... 221.000.00-------1.00-------------------------------------------------------------------------------------------------------------------------
............GTCTCAAAAAAAAAAAAAAATATGG..................................................................................................................................................................................................................... 251.000.00-----------------1.00---------------------------------------------------------------------------------------------------------------
..................AAAAAAAAAAAAAATAGTTGCAG................................................................................................................................................................................................................. 231.000.00-1.00-------------------------------------------------------------------------------------------------------------------------------
..................AAAAAAAAAAAAAATAGTTGAT.................................................................................................................................................................................................................. 221.000.00---1.00-----------------------------------------------------------------------------------------------------------------------------
.....................AAAAAAAAAAATAGTTGTGTG................................................................................................................................................................................................................ 211.000.00-------1.00-------------------------------------------------------------------------------------------------------------------------
..................AAAAAAAAAAAAAATAGTTGTAG................................................................................................................................................................................................................. 231.000.00-1.00-------------------------------------------------------------------------------------------------------------------------------
...................AAAAAAAAAAAAATAGTTGCG.................................................................................................................................................................................................................. 211.000.00-1.00-------------------------------------------------------------------------------------------------------------------------------
...................AAAAAAAAAAAAATAGTATAT.................................................................................................................................................................................................................. 211.000.00---1.00-----------------------------------------------------------------------------------------------------------------------------